POP-OUT | CLOSE
 
70S Ribosome translocation intermediate FA-3.6A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT A. THE 30S SUBUNIT A CAN BE FOUND IN 4KD8. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDA (30S) AND 4KDB (50S).
Sequence Clustering and Redundancy Reduction Results
4KD9
Sequence Clusters for the Sequence Entities in PDB 4KD9
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 68 312
95% 67 92 299
90% 67 93 313
70% 67 93 334
50% 68 130 244
40% 68 130 270
30% 74 172 208
Entity #10: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 145 97
95% 146 164 106
90% 146 164 114
70% 159 186 112
50% 222 310 58
40% 222 311 75
30% 322 443 48
Entity #11: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 164 62
95% 146 164 104
90% 146 164 112
70% 146 164 133
50% 146 166 171
40% 221 299 91
30% 321 435 53
Entity #12: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 149 83
95% 146 165 98
90% 146 165 106
70% 161 190 108
50% 223 301 68
40% 223 301 90
30% 223 301 110
Entity #13: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 169 49
95% 147 169 86
90% 147 169 95
70% 147 169 115
50% 222 301 59
40% 222 303 77
30% 222 305 99
Entity #14: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 21 1637
95% 13 21 2148
90% 13 21 2180
70% 13 21 2191
50% 221 298 69
40% 221 298 93
30% 221 298 113
Entity #15: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 148 85
95% 146 164 105
90% 146 164 113
70% 146 164 134
50% 146 164 176
40% 146 164 208
30% 146 164 227
Entity #16: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 156 75
95% 146 164 107
90% 146 164 115
70% 146 164 135
50% 222 304 60
40% 222 305 79
30% 222 305 101
Entity #17: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 164 64
95% 146 164 109
90% 146 164 117
70% 146 164 137
50% 159 192 144
40% 221 299 92
30% 221 299 112
Entity #18: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 171 52
95% 148 172 87
90% 148 172 98
70% 148 172 119
50% 210 284 79
40% 210 284 103
30% 210 286 125
Entity #19: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 165 57
95% 146 165 99
90% 146 165 107
70% 146 165 129
50% 161 189 148
40% 223 305 82
30% 290 383 70
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 164 58
95% 146 164 100
90% 146 164 108
70% 159 186 111
50% 221 297 70
40% 221 297 94
30% 221 297 115
Entity #20: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 164 63
95% 146 164 108
90% 146 164 116
70% 146 164 136
50% 146 166 172
40% 208 279 109
30% 208 281 130
Entity #21: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 164 60
95% 147 165 94
90% 147 165 102
70% 147 165 127
50% 147 165 170
40% 147 165 203
30% 147 165 223
Entity #22: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 149 78
95% 147 165 92
90% 147 165 101
70% 147 165 125
50% 223 302 63
40% 223 302 83
30% 223 302 103
Entity #23: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 152 79
95% 138 155 124
90% 138 155 132
70% 138 155 154
50% 138 155 197
40% 200 274 115
30% 215 298 114
Entity #24: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 169 54
95% 145 169 91
90% 145 169 100
70% 145 169 122
50% 145 169 167
40% 220 303 86
30% 220 303 106
Entity #25: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 148 86
95% 138 156 123
90% 138 156 131
70% 138 156 152
50% 157 188 150
40% 219 296 96
30% 219 296 117
Entity #26: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 162 69
95% 146 162 115
90% 146 162 123
70% 146 162 143
50% 146 163 180
40% 219 294 97
30% 219 294 118
Entity #27: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 164 66
95% 146 164 111
90% 146 164 119
70% 146 164 139
50% 146 164 177
40% 146 164 209
30% 146 164 228
Entity #28: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 164 65
95% 146 164 110
90% 146 164 118
70% 146 164 138
50% 159 190 146
40% 159 190 174
30% 159 190 194
Entity #29: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 118 129
95% 98 118 188
90% 98 118 201
70% 111 144 180
50% 173 252 102
40% 173 252 128
30% 173 252 149
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 164 59
95% 146 164 102
90% 146 164 110
70% 146 164 131
50% 224 302 66
40% 224 302 88
30% 224 303 107
Entity #30: Chains: e - 50S ribosomal protein L7/L12 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 10 4857
95% 3 10 5440
90% 3 10 5448
70% 3 10 5347
50% 3 10 5028
40% 3 10 4705
30% 3 10 4257
Entity #31: Chains: f,g - 50S RIBOSOMAL PROTEIN L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: h - 50S RIBOSOMAL PROTEIN L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #33: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 139 107
95% 146 161 118
90% 146 161 126
70% 146 161 145
50% 146 161 183
40% 146 161 214
30% 146 161 233
Entity #34: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 10 4919
95% 3 10 5489
90% 3 10 5494
70% 3 10 5399
50% 3 10 5071
40% 3 10 4748
30% 3 10 4298
Entity #35: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 148 84
95% 146 164 101
90% 146 164 109
70% 146 164 130
50% 164 191 145
40% 164 191 173
30% 227 304 104
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 149 81
95% 147 165 95
90% 147 165 103
70% 160 187 109
50% 223 302 64
40% 223 302 84
30% 223 302 105
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 164 61
95% 146 164 103
90% 146 164 111
70% 146 164 132
50% 158 196 136
40% 220 306 80
30% 314 432 55
Entity #7: Chains: J - 50S RIBOSOMAL PROTEIN L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 38 530
95% 23 41 680
90% 23 41 711
70% 36 63 467
50% 99 200 127
40% 99 203 151
30% 99 205 174
Entity #9: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 159 71
95% 142 159 120
90% 142 159 128
70% 142 159 148
50% 204 279 85
40% 204 279 108
30% 204 280 131
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.