POP-OUT | CLOSE
 
70S Ribosome translocation intermediate FA-3.6A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT A. THE 50S SUBUNIT A CAN BE FOUND IN 4KD9. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDA (30S) AND 4KDB (50S).
Sequence Clustering and Redundancy Reduction Results
4KD8
Sequence Clusters for the Sequence Entities in PDB 4KD8
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 255 25
95% 220 256 39
90% 220 256 43
70% 220 256 55
50% 220 256 96
40% 282 363 55
30% 282 363 77
Entity #10: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 255 27
95% 220 255 44
90% 220 255 47
70% 220 255 59
50% 282 363 42
40% 292 403 39
30% 292 403 53
Entity #11: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 224 37
95% 220 262 36
90% 220 262 38
70% 282 375 24
50% 282 375 33
40% 282 375 47
30% 282 375 71
Entity #12: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 256 24
95% 220 256 42
90% 220 256 45
70% 220 256 57
50% 282 365 39
40% 282 365 53
30% 290 401 57
Entity #13: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 254 28
95% 220 254 49
90% 220 254 52
70% 220 254 64
50% 220 254 99
40% 220 254 124
30% 220 254 144
Entity #14: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 258 21
95% 224 263 35
90% 224 263 37
70% 224 263 48
50% 289 376 32
40% 289 376 45
30% 289 376 69
Entity #15: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 250 31
95% 220 255 46
90% 220 255 49
70% 220 255 61
50% 220 255 97
40% 220 255 122
30% 282 363 78
Entity #16: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 157 62
95% 217 249 51
90% 219 253 53
70% 219 253 65
50% 219 253 100
40% 219 253 126
30% 219 253 146
Entity #17: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 26 1130
95% 22 36 1041
90% 22 36 1064
70% 22 36 1093
50% 22 36 1157
40% 22 36 1190
30% 22 36 1178
Entity #18: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 35 742
95% 22 35 1070
90% 22 35 1092
70% 22 35 1130
50% 283 366 38
40% 283 366 52
30% 283 366 75
Entity #19: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 193 43
95% 220 254 47
90% 220 254 50
70% 220 254 62
50% 220 254 98
40% 220 254 123
30% 220 254 143
Entity #2: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 35 735
95% 22 35 1063
90% 22 35 1085
70% 22 35 1119
50% 46 79 449
40% 46 80 467
30% 46 80 487
Entity #20: Chains: A - ribosomal RNA 16S rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: W - transfer RNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #22: Chains: V - messenger RNA rna, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - Elongation factor G protein, length: 687 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 21 1388
95% 21 34 1044
90% 21 35 1017
70% 21 35 1049
50% 34 52 674
40% 34 52 698
30% 36 54 671
Entity #24: Chains: U - VIOMYCIN protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 248 32
95% 220 256 40
90% 220 256 44
70% 220 256 56
50% 282 363 40
40% 282 364 54
30% 282 364 76
Entity #4: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 255 26
95% 220 255 43
90% 220 255 46
70% 220 255 58
50% 283 367 37
40% 283 367 51
30% 283 369 72
Entity #5: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 260 18
95% 228 266 34
90% 228 266 36
70% 228 266 47
50% 228 266 88
40% 228 266 112
30% 254 313 95
Entity #6: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 259 20
95% 221 260 37
90% 221 260 39
70% 221 260 51
50% 248 308 57
40% 248 309 74
30% 248 309 97
Entity #7: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 255 23
95% 219 255 41
90% 221 259 40
70% 221 259 52
50% 285 369 36
40% 286 371 49
30% 295 408 50
Entity #8: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 142 82
95% 220 255 45
90% 220 255 48
70% 220 255 60
50% 282 363 41
40% 282 363 56
30% 290 399 59
Entity #9: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 218 252 29
95% 220 254 48
90% 220 254 51
70% 220 254 63
50% 288 369 34
40% 288 369 48
30% 288 374 67
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.