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70S RIBOSOME TRANSLOCATION INTERMEDIATE GDPNP-I CONTAINING ELONGATION FACTOR EFG/GDPNP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT B. THE 30S SUBUNIT B CAN BE FOUND IN 4KD0. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KCY (30S) AND 4KCZ (50S).
Sequence Clustering and Redundancy Reduction Results
4KD2
Sequence Clusters for the Sequence Entities in PDB 4KD2
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 66 334
95% 62 90 301
90% 62 91 315
70% 62 91 338
50% 63 128 240
40% 63 128 269
30% 68 170 210
Entity #10: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 132 108
95% 122 151 114
90% 122 151 123
70% 132 173 115
50% 185 296 62
40% 185 297 81
30% 258 402 56
Entity #11: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 151 69
95% 122 151 112
90% 122 151 121
70% 122 151 146
50% 122 153 192
40% 184 285 95
30% 257 394 62
Entity #12: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 136 102
95% 122 152 106
90% 122 152 114
70% 134 177 111
50% 186 287 73
40% 186 287 94
30% 186 287 116
Entity #13: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 156 53
95% 123 156 91
90% 123 156 99
70% 123 156 122
50% 185 287 64
40% 185 289 82
30% 185 291 102
Entity #14: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 19 1806
95% 12 19 2329
90% 12 19 2367
70% 12 19 2394
50% 184 284 78
40% 184 284 99
30% 184 284 119
Entity #15: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 135 104
95% 122 151 113
90% 122 151 122
70% 122 151 147
50% 122 151 196
40% 122 151 231
30% 122 151 245
Entity #16: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 143 80
95% 122 151 115
90% 122 151 124
70% 122 151 148
50% 185 290 66
40% 185 291 84
30% 185 291 106
Entity #17: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 151 71
95% 122 151 117
90% 122 151 126
70% 122 151 150
50% 132 179 148
40% 184 285 96
30% 184 285 118
Entity #18: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 158 60
95% 124 159 96
90% 124 159 104
70% 124 159 127
50% 176 270 87
40% 176 270 108
30% 176 272 130
Entity #19: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 152 64
95% 122 152 107
90% 122 152 115
70% 122 152 141
50% 132 176 154
40% 184 291 87
30% 251 369 73
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 151 65
95% 122 151 108
90% 122 151 116
70% 132 173 114
50% 184 283 79
40% 184 283 100
30% 184 283 122
Entity #20: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 151 70
95% 122 151 116
90% 122 151 125
70% 122 151 149
50% 122 153 193
40% 174 265 115
30% 174 267 137
Entity #21: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 151 67
95% 123 152 104
90% 123 152 112
70% 123 152 139
50% 123 152 191
40% 123 152 228
30% 123 152 240
Entity #22: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 136 96
95% 123 152 102
90% 123 152 110
70% 123 152 135
50% 186 288 67
40% 186 288 88
30% 186 288 108
Entity #23: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 114 139 97
95% 114 142 131
90% 114 142 144
70% 114 142 168
50% 114 142 212
40% 166 260 119
30% 176 284 120
Entity #24: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 158 58
95% 123 158 98
90% 123 158 106
70% 123 158 129
50% 123 158 176
40% 185 291 86
30% 185 291 107
Entity #25: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 135 105
95% 114 143 128
90% 114 143 140
70% 114 143 165
50% 127 175 161
40% 179 282 102
30% 179 282 124
Entity #26: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 149 76
95% 122 149 122
90% 122 149 131
70% 122 149 153
50% 122 150 199
40% 183 280 104
30% 183 280 126
Entity #27: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 151 73
95% 122 151 119
90% 122 151 128
70% 122 151 152
50% 122 151 197
40% 122 151 232
30% 122 151 246
Entity #28: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 151 72
95% 122 151 118
90% 122 151 127
70% 122 151 151
50% 132 177 152
40% 132 177 182
30% 132 177 205
Entity #29: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 105 184
95% 80 105 262
90% 80 105 273
70% 90 131 206
50% 142 238 109
40% 142 238 132
30% 142 238 152
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 151 66
95% 122 151 110
90% 122 151 118
70% 122 151 144
50% 184 288 72
40% 184 288 93
30% 184 289 114
Entity #30: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 126 114
95% 122 148 123
90% 122 148 132
70% 122 148 155
50% 122 148 202
40% 122 148 236
30% 122 148 252
Entity #33: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 7187
95% 2 8 7431
90% 2 8 7360
70% 2 8 7056
50% 2 8 6461
40% 2 8 5956
30% 2 8 5328
Entity #34: Chains: e - 50S ribosomal protein L7/L12 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 7036
95% 2 8 7299
90% 2 8 7235
70% 2 8 6939
50% 2 8 6356
40% 2 8 5858
30% 2 8 5234
Entity #35: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 135 103
95% 122 151 109
90% 122 151 117
70% 122 151 143
50% 134 178 150
40% 134 178 178
30% 187 290 109
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 136 98
95% 123 152 105
90% 123 152 113
70% 133 174 113
50% 186 288 68
40% 186 288 89
30% 186 288 110
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 151 68
95% 122 151 111
90% 122 151 120
70% 122 151 145
50% 132 183 147
40% 184 292 85
30% 257 397 61
Entity #7: Chains: J - 50S RIBOSOMAL PROTEIN L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 35 581
95% 21 38 737
90% 21 38 763
70% 31 60 486
50% 84 196 127
40% 84 199 155
30% 84 201 179
Entity #9: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 146 77
95% 120 146 125
90% 120 146 135
70% 120 146 158
50% 172 265 90
40% 172 265 114
30% 172 266 139
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.