POP-OUT | CLOSE
 
70S Ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT B. THE 50S SUBUNIT B CAN BE FOUND IN 4KD2. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KCY (30S) AND 4KCZ (50S)
Sequence Clustering and Redundancy Reduction Results
4KD0
Sequence Clusters for the Sequence Entities in PDB 4KD0
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 255 25
95% 203 256 39
90% 203 256 43
70% 203 256 55
50% 203 256 94
40% 255 363 55
30% 255 363 77
Entity #10: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 255 27
95% 203 255 44
90% 203 255 47
70% 203 255 59
50% 255 363 42
40% 265 403 39
30% 265 403 53
Entity #11: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 166 224 37
95% 203 262 36
90% 203 262 38
70% 255 375 24
50% 255 375 33
40% 255 375 46
30% 255 375 71
Entity #12: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 256 24
95% 203 256 42
90% 203 256 45
70% 203 256 57
50% 255 365 39
40% 255 365 53
30% 263 401 55
Entity #13: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 254 28
95% 203 254 49
90% 203 254 52
70% 203 254 64
50% 203 254 97
40% 203 254 122
30% 203 254 144
Entity #14: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 258 21
95% 207 263 35
90% 207 263 37
70% 207 263 48
50% 262 376 32
40% 262 376 44
30% 262 376 69
Entity #15: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 250 30
95% 203 255 46
90% 203 255 49
70% 203 255 61
50% 203 255 95
40% 203 255 120
30% 255 363 78
Entity #16: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 92 218
95% 201 249 51
90% 203 253 53
70% 203 253 65
50% 203 253 98
40% 203 253 124
30% 203 253 146
Entity #17: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 26 1125
95% 19 36 1039
90% 19 36 1062
70% 19 36 1091
50% 19 36 1156
40% 19 36 1188
30% 19 36 1176
Entity #18: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 35 738
95% 19 35 1069
90% 19 35 1091
70% 19 35 1129
50% 256 366 38
40% 256 366 52
30% 256 366 74
Entity #19: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 61 356
95% 203 254 47
90% 203 254 50
70% 203 254 62
50% 203 254 96
40% 203 254 121
30% 203 254 143
Entity #2: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 35 731
95% 19 35 1062
90% 19 35 1084
70% 19 35 1118
50% 43 79 445
40% 43 80 463
30% 43 80 482
Entity #20: Chains: A - ribosomal RNA 16S rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: W - transfer RNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #22: Chains: V - messenger RNA rna, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - Elongation factor G protein, length: 687 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 21 1382
95% 20 34 1042
90% 20 35 1013
70% 20 35 1047
50% 33 52 668
40% 33 52 694
30% 35 54 666
Entity #24: Chains: U - VIOMYCIN protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 201 248 32
95% 203 256 40
90% 203 256 44
70% 203 256 56
50% 255 363 40
40% 255 364 54
30% 255 364 75
Entity #4: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 255 26
95% 203 255 43
90% 203 255 46
70% 203 255 58
50% 256 367 37
40% 256 367 51
30% 256 369 72
Entity #5: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 260 18
95% 211 266 34
90% 211 266 36
70% 211 266 47
50% 211 266 88
40% 211 266 110
30% 237 313 94
Entity #6: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 259 20
95% 204 260 37
90% 204 260 39
70% 204 260 50
50% 231 308 57
40% 231 309 73
30% 231 309 97
Entity #7: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 255 23
95% 202 255 41
90% 204 259 40
70% 204 259 52
50% 258 369 36
40% 259 371 48
30% 268 408 50
Entity #8: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 113 133
95% 203 255 45
90% 203 255 48
70% 203 255 60
50% 255 363 41
40% 255 363 56
30% 263 399 58
Entity #9: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 201 252 29
95% 203 254 48
90% 203 254 51
70% 203 254 63
50% 261 369 34
40% 261 369 47
30% 261 374 66
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.