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70S Ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, MRNA, AND TRNA BOUND IN THE pe*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT B. THE 50S SUBUNIT B CAN BE FOUND IN 4KD2. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KCY (30S) AND 4KCZ (50S)
Sequence Clustering and Redundancy Reduction Results
4KD0
Sequence Clusters for the Sequence Entities in PDB 4KD0
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 268 23
95% 214 269 38
90% 214 269 41
70% 214 269 51
50% 214 269 90
40% 266 376 53
30% 266 376 75
Entity #10: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 268 25
95% 214 268 43
90% 214 268 45
70% 214 268 55
50% 266 376 41
40% 276 416 40
30% 276 416 52
Entity #11: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 237 35
95% 214 275 35
90% 214 275 37
70% 266 388 24
50% 266 388 33
40% 266 388 44
30% 266 388 68
Entity #12: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 269 22
95% 214 269 41
90% 214 269 43
70% 214 269 53
50% 266 378 38
40% 266 378 51
30% 274 414 55
Entity #13: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 267 26
95% 214 267 48
90% 214 267 50
70% 214 267 60
50% 214 267 93
40% 214 267 119
30% 214 267 140
Entity #14: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 271 20
95% 218 276 32
90% 218 276 34
70% 218 276 47
50% 273 389 32
40% 273 389 43
30% 273 389 67
Entity #15: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 263 28
95% 214 268 45
90% 214 268 47
70% 214 268 57
50% 214 268 91
40% 214 268 117
30% 266 376 76
Entity #16: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 92 220
95% 212 262 49
90% 214 266 51
70% 214 266 61
50% 214 266 94
40% 214 266 120
30% 214 266 142
Entity #17: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 28 1046
95% 19 38 975
90% 19 38 998
70% 19 38 1029
50% 19 38 1094
40% 19 38 1118
30% 19 38 1098
Entity #18: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 37 697
95% 19 37 1000
90% 19 37 1022
70% 19 37 1059
50% 267 379 37
40% 267 379 49
30% 267 379 72
Entity #19: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 61 362
95% 214 267 46
90% 214 267 48
70% 214 267 58
50% 214 267 92
40% 214 267 118
30% 214 267 139
Entity #2: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 37 691
95% 19 37 991
90% 19 37 1013
70% 19 37 1045
50% 43 81 437
40% 43 82 456
30% 43 82 473
Entity #20: Chains: A - ribosomal RNA 16S rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: W - transfer RNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #22: Chains: V - messenger RNA rna, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - Elongation factor G protein, length: 687 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 21 1400
95% 20 36 978
90% 20 37 963
70% 20 37 989
50% 33 54 648
40% 33 54 678
30% 35 56 657
Entity #24: Chains: U - VIOMYCIN protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 212 261 29
95% 214 269 39
90% 214 269 42
70% 214 269 52
50% 266 376 39
40% 266 377 52
30% 266 377 74
Entity #4: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 268 24
95% 214 268 42
90% 214 268 44
70% 214 268 54
50% 267 380 36
40% 267 380 48
30% 267 382 70
Entity #5: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 273 18
95% 222 279 29
90% 222 279 30
70% 222 279 44
50% 222 279 82
40% 222 279 106
30% 248 326 94
Entity #6: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 272 19
95% 215 273 36
90% 215 273 38
70% 215 273 49
50% 242 321 56
40% 242 322 73
30% 242 322 96
Entity #7: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 268 21
95% 213 268 40
90% 215 272 39
70% 215 272 50
50% 269 382 35
40% 270 384 46
30% 279 421 51
Entity #8: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 113 135
95% 214 268 44
90% 214 268 46
70% 214 268 56
50% 266 376 40
40% 266 376 54
30% 274 412 57
Entity #9: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 212 265 27
95% 214 267 47
90% 214 267 49
70% 214 267 59
50% 272 382 34
40% 272 382 45
30% 272 387 65
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.