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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 50S ribosomal subunit B. The full asymmetric unit also contains PDB entries 4KBV (30S subunit B), 4KBT (30S subunit A), and 4KBU (50S subunit A).
Sequence Clustering and Redundancy Reduction Results
4KBW
Sequence Clusters for the Sequence Entities in PDB 4KBW
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 66 334
95% 72 90 301
90% 72 91 315
70% 72 91 338
50% 73 128 240
40% 73 128 269
30% 79 170 210
Entity #10: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 151 69
95% 140 151 112
90% 140 151 121
70% 140 151 146
50% 140 153 192
40% 218 285 95
30% 291 394 62
Entity #11: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 136 102
95% 140 152 106
90% 140 152 114
70% 156 177 111
50% 220 287 73
40% 220 287 94
30% 220 287 116
Entity #12: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 156 53
95% 141 156 91
90% 141 156 99
70% 141 156 122
50% 219 287 64
40% 219 289 82
30% 219 291 102
Entity #13: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 19 1806
95% 16 19 2329
90% 16 19 2367
70% 16 19 2394
50% 218 284 78
40% 218 284 99
30% 218 284 119
Entity #14: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 135 104
95% 140 151 113
90% 140 151 122
70% 140 151 147
50% 140 151 196
40% 140 151 231
30% 140 151 245
Entity #15: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 143 80
95% 140 151 115
90% 140 151 124
70% 140 151 148
50% 219 290 66
40% 219 291 84
30% 219 291 106
Entity #16: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 151 71
95% 140 151 117
90% 140 151 126
70% 140 151 150
50% 154 179 148
40% 218 285 96
30% 218 285 118
Entity #17: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 158 60
95% 142 159 96
90% 142 159 104
70% 142 159 127
50% 206 270 87
40% 206 270 108
30% 206 272 130
Entity #18: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 152 64
95% 140 152 107
90% 140 152 115
70% 140 152 141
50% 156 176 154
40% 220 291 87
30% 287 369 73
Entity #19: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 151 70
95% 140 151 116
90% 140 151 125
70% 140 151 149
50% 140 153 193
40% 204 265 115
30% 204 267 137
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 151 65
95% 140 151 108
90% 140 151 116
70% 154 173 114
50% 218 283 79
40% 218 283 100
30% 218 283 122
Entity #20: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 151 67
95% 141 152 104
90% 141 152 112
70% 141 152 139
50% 141 152 191
40% 141 152 228
30% 141 152 240
Entity #21: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 136 96
95% 141 152 102
90% 141 152 110
70% 141 152 135
50% 220 288 67
40% 220 288 88
30% 220 288 108
Entity #22: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 126 114
95% 140 148 123
90% 140 148 132
70% 140 148 155
50% 140 148 202
40% 140 148 236
30% 140 148 252
Entity #23: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 7187
95% 6 8 7431
90% 6 8 7360
70% 6 8 7056
50% 6 8 6461
40% 6 8 5956
30% 6 8 5328
Entity #24: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 146 77
95% 136 146 125
90% 136 146 135
70% 136 146 158
50% 200 265 90
40% 200 265 114
30% 200 266 139
Entity #25: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 139 97
95% 132 142 131
90% 132 142 144
70% 132 142 168
50% 132 142 212
40% 196 260 119
30% 212 284 120
Entity #26: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 158 58
95% 141 158 98
90% 141 158 106
70% 141 158 129
50% 141 158 176
40% 219 291 86
30% 219 291 107
Entity #27: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 135 105
95% 132 143 128
90% 132 143 140
70% 132 143 165
50% 152 175 161
40% 216 282 102
30% 216 282 124
Entity #28: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 149 76
95% 140 149 122
90% 140 149 131
70% 140 149 153
50% 140 150 199
40% 216 280 104
30% 216 280 126
Entity #29: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 151 73
95% 140 151 119
90% 140 151 128
70% 140 151 152
50% 140 151 197
40% 140 151 232
30% 140 151 246
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 151 66
95% 140 151 110
90% 140 151 118
70% 140 151 144
50% 221 288 72
40% 221 288 93
30% 221 289 114
Entity #30: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 151 72
95% 140 151 118
90% 140 151 127
70% 140 151 151
50% 154 177 152
40% 154 177 182
30% 154 177 205
Entity #31: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 105 184
95% 92 105 262
90% 92 105 273
70% 106 131 206
50% 170 238 109
40% 170 238 132
30% 170 238 152
Entity #32: Chains: e - 50S ribosomal protein L7/L12 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 7036
95% 6 8 7299
90% 6 8 7235
70% 6 8 6939
50% 6 8 6356
40% 6 8 5858
30% 6 8 5234
Entity #33: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #34: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 135 103
95% 140 151 109
90% 140 151 117
70% 140 151 143
50% 159 178 150
40% 159 178 178
30% 224 290 109
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 136 98
95% 141 152 105
90% 141 152 113
70% 155 174 113
50% 220 288 68
40% 220 288 89
30% 220 288 110
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 151 68
95% 140 151 111
90% 140 151 120
70% 140 151 145
50% 153 183 147
40% 217 292 85
30% 290 397 61
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 35 581
95% 25 38 737
90% 25 38 763
70% 39 60 486
50% 104 196 127
40% 104 199 155
30% 104 201 179
Entity #9: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 132 108
95% 140 151 114
90% 140 151 123
70% 154 173 115
50% 219 296 62
40% 219 297 81
30% 292 402 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.