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An Information Portal to 105025 Biological Macromolecular Structures

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 50S ribosomal subunit B. The full asymmetric unit also contains PDB entries 4KBV (30S subunit B), 4KBT (30S subunit A), and 4KBU (50S subunit A).
Sequence Clustering and Redundancy Reduction Results
4KBW
Sequence Clusters for the Sequence Entities in PDB 4KBW
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 69 310
95% 73 93 297
90% 73 94 311
70% 73 94 331
50% 74 131 246
40% 74 131 276
30% 80 173 206
Entity #10: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 164 63
95% 151 164 104
90% 151 164 112
70% 151 164 133
50% 151 166 172
40% 231 302 90
30% 338 445 53
Entity #11: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 149 83
95% 151 165 98
90% 151 165 106
70% 167 190 108
50% 233 304 66
40% 233 304 87
30% 233 304 111
Entity #12: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 169 50
95% 152 169 86
90% 152 169 95
70% 152 169 117
50% 232 304 59
40% 232 306 77
30% 232 308 99
Entity #13: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 21 1652
95% 16 21 2164
90% 16 21 2197
70% 16 21 2206
50% 231 301 69
40% 231 301 93
30% 231 301 113
Entity #14: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 148 85
95% 151 164 105
90% 151 164 113
70% 151 164 134
50% 151 164 176
40% 151 164 209
30% 151 164 227
Entity #15: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 156 75
95% 151 164 107
90% 151 164 115
70% 151 164 135
50% 232 307 61
40% 232 308 79
30% 232 308 102
Entity #16: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 164 65
95% 151 164 109
90% 151 164 117
70% 151 164 137
50% 165 192 144
40% 231 302 91
30% 231 302 112
Entity #17: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 171 53
95% 153 172 88
90% 153 172 98
70% 153 172 119
50% 219 287 79
40% 219 287 104
30% 219 289 121
Entity #18: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 165 58
95% 151 165 99
90% 151 165 107
70% 151 165 129
50% 167 189 148
40% 233 308 82
30% 300 386 69
Entity #19: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 164 64
95% 151 164 108
90% 151 164 116
70% 151 164 136
50% 151 166 173
40% 217 282 109
30% 217 284 128
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 164 59
95% 151 164 100
90% 151 164 108
70% 165 186 112
50% 231 300 70
40% 231 300 94
30% 231 300 115
Entity #20: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 164 61
95% 152 165 94
90% 152 165 102
70% 152 165 127
50% 152 165 171
40% 152 165 204
30% 152 165 223
Entity #21: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 149 78
95% 152 165 92
90% 152 165 101
70% 152 165 125
50% 233 305 62
40% 233 305 83
30% 233 305 107
Entity #22: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 139 107
95% 151 161 118
90% 151 161 126
70% 151 161 145
50% 151 161 184
40% 151 161 215
30% 151 161 234
Entity #23: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 10 4950
95% 6 10 5522
90% 6 10 5527
70% 6 10 5435
50% 6 10 5094
40% 6 10 4770
30% 6 10 4317
Entity #24: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 159 72
95% 147 159 120
90% 147 159 128
70% 147 159 148
50% 213 282 85
40% 213 282 108
30% 213 283 129
Entity #25: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 152 79
95% 143 155 124
90% 143 155 132
70% 143 155 154
50% 143 155 199
40% 209 277 111
30% 225 301 114
Entity #26: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 171 52
95% 152 171 90
90% 152 171 99
70% 152 171 120
50% 152 171 167
40% 232 308 81
30% 232 308 103
Entity #27: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 148 86
95% 143 156 123
90% 143 156 131
70% 143 156 152
50% 163 188 150
40% 229 299 95
30% 229 299 116
Entity #28: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 162 69
95% 151 162 115
90% 151 162 123
70% 151 162 143
50% 151 163 180
40% 229 297 97
30% 229 297 117
Entity #29: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 164 67
95% 151 164 111
90% 151 164 119
70% 151 164 139
50% 151 164 177
40% 151 164 210
30% 151 164 228
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 164 60
95% 151 164 102
90% 151 164 110
70% 151 164 131
50% 234 305 65
40% 234 305 86
30% 234 306 110
Entity #30: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 164 66
95% 151 164 110
90% 151 164 118
70% 151 164 138
50% 165 190 146
40% 165 190 174
30% 165 190 195
Entity #31: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 118 130
95% 103 118 190
90% 103 118 203
70% 117 144 183
50% 183 255 101
40% 183 255 127
30% 183 255 146
Entity #32: Chains: e - 50S ribosomal protein L7/L12 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 10 4886
95% 6 10 5471
90% 6 10 5479
70% 6 10 5381
50% 6 10 5050
40% 6 10 4726
30% 6 10 4275
Entity #33: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #34: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 148 84
95% 151 164 101
90% 151 164 109
70% 151 164 130
50% 170 191 145
40% 170 191 173
30% 237 307 108
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 149 81
95% 152 165 95
90% 152 165 103
70% 166 187 109
50% 233 305 63
40% 233 305 84
30% 233 305 109
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 164 62
95% 151 164 103
90% 151 164 111
70% 151 164 132
50% 164 196 139
40% 230 309 80
30% 337 448 51
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 38 585
95% 26 41 702
90% 26 41 734
70% 40 63 473
50% 107 203 121
40% 107 206 150
30% 107 208 175
Entity #9: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 145 98
95% 151 164 106
90% 151 164 114
70% 165 186 113
50% 232 313 57
40% 232 314 76
30% 339 453 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.