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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 30S ribosomal subunit B. The full asymmetric unit also contains PDB entries 4KBW (50S subunit B), 4KBT (30S subunit A), and 4KBU (50S subunit A).
Sequence Clustering and Redundancy Reduction Results
4KBV
Sequence Clusters for the Sequence Entities in PDB 4KBV
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 255 25
95% 226 256 39
90% 226 256 43
70% 226 256 55
50% 226 256 96
40% 290 363 55
30% 290 363 77
Entity #10: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 255 27
95% 226 255 44
90% 226 255 47
70% 226 255 59
50% 290 363 42
40% 300 403 39
30% 300 403 53
Entity #11: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 224 37
95% 226 262 36
90% 226 262 38
70% 290 375 24
50% 290 375 33
40% 290 375 47
30% 290 375 71
Entity #12: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 256 24
95% 226 256 42
90% 226 256 45
70% 226 256 57
50% 290 365 39
40% 290 365 53
30% 298 401 57
Entity #13: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 254 28
95% 226 254 49
90% 226 254 52
70% 226 254 64
50% 226 254 99
40% 226 254 124
30% 226 254 144
Entity #14: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 258 21
95% 231 263 35
90% 231 263 37
70% 231 263 48
50% 298 376 32
40% 298 376 45
30% 298 376 69
Entity #15: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 250 31
95% 226 255 46
90% 226 255 49
70% 226 255 61
50% 226 255 97
40% 226 255 122
30% 290 363 78
Entity #16: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 92 219
95% 222 249 51
90% 225 253 53
70% 225 253 65
50% 225 253 100
40% 225 253 126
30% 225 253 146
Entity #17: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 26 1130
95% 25 36 1041
90% 25 36 1064
70% 25 36 1093
50% 25 36 1157
40% 25 36 1190
30% 25 36 1178
Entity #18: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 35 742
95% 25 35 1070
90% 25 35 1092
70% 25 35 1130
50% 292 366 38
40% 292 366 52
30% 292 366 75
Entity #19: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 61 359
95% 226 254 47
90% 226 254 50
70% 226 254 62
50% 226 254 98
40% 226 254 123
30% 226 254 143
Entity #2: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 35 735
95% 25 35 1063
90% 25 35 1085
70% 25 35 1119
50% 49 79 449
40% 49 80 467
30% 49 80 487
Entity #20: Chains: A - 16S ribosomal RNA rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: V - messenger RNA rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #22: Chains: W - tRNA-Met rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - Elongation factor G protein, length: 687 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 21 1388
95% 24 34 1044
90% 24 35 1017
70% 24 35 1049
50% 37 52 674
40% 37 52 698
30% 39 54 671
Entity #24: Chains: U - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 248 32
95% 227 256 40
90% 227 256 44
70% 227 256 56
50% 291 363 40
40% 291 364 54
30% 291 364 76
Entity #4: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 255 26
95% 227 255 43
90% 227 255 46
70% 227 255 58
50% 292 367 37
40% 292 367 51
30% 292 369 72
Entity #5: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 260 18
95% 235 266 34
90% 235 266 36
70% 235 266 47
50% 235 266 88
40% 235 266 112
30% 261 313 95
Entity #6: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 259 20
95% 228 260 37
90% 228 260 39
70% 228 260 51
50% 255 308 57
40% 255 309 74
30% 255 309 97
Entity #7: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 255 23
95% 225 255 41
90% 228 259 40
70% 228 259 52
50% 294 369 36
40% 295 371 49
30% 304 408 50
Entity #8: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 113 134
95% 226 255 45
90% 226 255 48
70% 226 255 60
50% 290 363 41
40% 290 363 56
30% 298 399 59
Entity #9: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 252 29
95% 226 254 48
90% 226 254 51
70% 226 254 63
50% 296 369 34
40% 296 369 48
30% 296 374 67
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.