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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 50S ribosomal subunit A. The full asymmetric unit also contains PDB entries 4KBT (30S subunit A), 4KBV (30S subunit B), and 4KBW (50S subunit B).
Sequence Clustering and Redundancy Reduction Results
4KBU
Sequence Clusters for the Sequence Entities in PDB 4KBU
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 66 334
95% 71 90 301
90% 71 91 315
70% 71 91 338
50% 72 128 240
40% 72 128 269
30% 78 170 210
Entity #10: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 151 69
95% 139 151 112
90% 139 151 121
70% 139 151 146
50% 139 153 192
40% 217 285 95
30% 290 394 62
Entity #11: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 136 102
95% 139 152 106
90% 139 152 114
70% 155 177 111
50% 219 287 73
40% 219 287 94
30% 219 287 116
Entity #12: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 156 53
95% 140 156 91
90% 140 156 99
70% 140 156 122
50% 218 287 64
40% 218 289 82
30% 218 291 102
Entity #13: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 19 1806
95% 15 19 2329
90% 15 19 2367
70% 15 19 2394
50% 217 284 78
40% 217 284 99
30% 217 284 119
Entity #14: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 135 104
95% 139 151 113
90% 139 151 122
70% 139 151 147
50% 139 151 196
40% 139 151 231
30% 139 151 245
Entity #15: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 143 80
95% 139 151 115
90% 139 151 124
70% 139 151 148
50% 218 290 66
40% 218 291 84
30% 218 291 106
Entity #16: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 151 71
95% 139 151 117
90% 139 151 126
70% 139 151 150
50% 153 179 148
40% 217 285 96
30% 217 285 118
Entity #17: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 158 60
95% 141 159 96
90% 141 159 104
70% 141 159 127
50% 205 270 87
40% 205 270 108
30% 205 272 130
Entity #18: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 152 64
95% 139 152 107
90% 139 152 115
70% 139 152 141
50% 155 176 154
40% 219 291 87
30% 286 369 73
Entity #19: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 151 70
95% 139 151 116
90% 139 151 125
70% 139 151 149
50% 139 153 193
40% 203 265 115
30% 203 267 137
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 151 65
95% 139 151 108
90% 139 151 116
70% 153 173 114
50% 217 283 79
40% 217 283 100
30% 217 283 122
Entity #20: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 151 67
95% 140 152 104
90% 140 152 112
70% 140 152 139
50% 140 152 191
40% 140 152 228
30% 140 152 240
Entity #21: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 136 96
95% 140 152 102
90% 140 152 110
70% 140 152 135
50% 219 288 67
40% 219 288 88
30% 219 288 108
Entity #22: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 126 114
95% 139 148 123
90% 139 148 132
70% 139 148 155
50% 139 148 202
40% 139 148 236
30% 139 148 252
Entity #23: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7187
95% 5 8 7431
90% 5 8 7360
70% 5 8 7056
50% 5 8 6461
40% 5 8 5956
30% 5 8 5328
Entity #24: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 146 77
95% 135 146 125
90% 135 146 135
70% 135 146 158
50% 199 265 90
40% 199 265 114
30% 199 266 139
Entity #25: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 139 97
95% 131 142 131
90% 131 142 144
70% 131 142 168
50% 131 142 212
40% 195 260 119
30% 211 284 120
Entity #26: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 158 58
95% 140 158 98
90% 140 158 106
70% 140 158 129
50% 140 158 176
40% 218 291 86
30% 218 291 107
Entity #27: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 135 105
95% 131 143 128
90% 131 143 140
70% 131 143 165
50% 151 175 161
40% 215 282 102
30% 215 282 124
Entity #28: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 149 76
95% 139 149 122
90% 139 149 131
70% 139 149 153
50% 139 150 199
40% 215 280 104
30% 215 280 126
Entity #29: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 151 73
95% 139 151 119
90% 139 151 128
70% 139 151 152
50% 139 151 197
40% 139 151 232
30% 139 151 246
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 151 66
95% 139 151 110
90% 139 151 118
70% 139 151 144
50% 220 288 72
40% 220 288 93
30% 220 289 114
Entity #30: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 151 72
95% 139 151 118
90% 139 151 127
70% 139 151 151
50% 153 177 152
40% 153 177 182
30% 153 177 205
Entity #31: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 105 184
95% 91 105 262
90% 91 105 273
70% 105 131 206
50% 169 238 109
40% 169 238 132
30% 169 238 152
Entity #32: Chains: e - 50S ribosomal protein L7/L12 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 8 7036
95% 5 8 7299
90% 5 8 7235
70% 5 8 6939
50% 5 8 6356
40% 5 8 5858
30% 5 8 5234
Entity #33: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #34: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 135 103
95% 139 151 109
90% 139 151 117
70% 139 151 143
50% 158 178 150
40% 158 178 178
30% 223 290 109
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 136 98
95% 140 152 105
90% 140 152 113
70% 154 174 113
50% 219 288 68
40% 219 288 89
30% 219 288 110
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 151 68
95% 139 151 111
90% 139 151 120
70% 139 151 145
50% 152 183 147
40% 216 292 85
30% 289 397 61
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 35 581
95% 24 38 737
90% 24 38 763
70% 38 60 486
50% 103 196 127
40% 103 199 155
30% 103 201 179
Entity #9: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 132 108
95% 139 151 114
90% 139 151 123
70% 153 173 115
50% 218 296 62
40% 218 297 81
30% 291 402 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.