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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 50S ribosomal subunit A. The full asymmetric unit also contains PDB entries 4KBT (30S subunit A), 4KBV (30S subunit B), and 4KBW (50S subunit B).
Sequence Clustering and Redundancy Reduction Results
4KBU
Sequence Clusters for the Sequence Entities in PDB 4KBU
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 69 310
95% 72 93 297
90% 72 94 311
70% 72 94 331
50% 73 132 244
40% 73 132 275
30% 79 174 204
Entity #10: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 63
95% 150 164 104
90% 150 164 112
70% 150 164 133
50% 150 166 173
40% 230 303 89
30% 337 446 54
Entity #11: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 149 83
95% 150 165 98
90% 150 165 106
70% 166 190 108
50% 232 305 67
40% 232 305 87
30% 232 305 111
Entity #12: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 169 50
95% 151 169 86
90% 151 169 95
70% 151 169 117
50% 231 305 59
40% 231 307 77
30% 231 309 98
Entity #13: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 21 1657
95% 15 21 2169
90% 15 21 2202
70% 15 21 2211
50% 230 302 69
40% 230 302 92
30% 230 302 113
Entity #14: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 148 85
95% 150 164 105
90% 150 164 113
70% 150 164 134
50% 150 164 177
40% 150 164 209
30% 150 164 227
Entity #15: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 75
95% 150 164 107
90% 150 164 115
70% 150 164 135
50% 231 308 61
40% 231 309 79
30% 231 309 102
Entity #16: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 65
95% 150 164 109
90% 150 164 117
70% 150 164 137
50% 164 192 145
40% 230 303 90
30% 230 303 112
Entity #17: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 171 53
95% 152 172 88
90% 152 172 98
70% 152 172 119
50% 218 288 79
40% 218 288 104
30% 218 290 121
Entity #18: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 165 58
95% 150 165 99
90% 150 165 107
70% 150 165 129
50% 166 189 149
40% 232 309 82
30% 299 387 69
Entity #19: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 64
95% 150 164 108
90% 150 164 116
70% 150 164 136
50% 150 166 174
40% 216 283 107
30% 216 285 128
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 59
95% 150 164 100
90% 150 164 108
70% 164 186 112
50% 230 301 71
40% 230 301 94
30% 230 301 115
Entity #20: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 61
95% 151 165 94
90% 151 165 102
70% 151 165 127
50% 151 165 172
40% 151 165 204
30% 151 165 223
Entity #21: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 149 78
95% 151 165 92
90% 151 165 101
70% 151 165 125
50% 232 306 63
40% 232 306 83
30% 232 306 104
Entity #22: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 139 107
95% 150 161 118
90% 150 161 126
70% 150 161 145
50% 150 161 185
40% 150 161 215
30% 150 161 234
Entity #23: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 10 4964
95% 5 10 5531
90% 5 10 5537
70% 5 10 5446
50% 5 10 5101
40% 5 10 4779
30% 5 10 4325
Entity #24: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 159 72
95% 146 159 120
90% 146 159 128
70% 146 159 148
50% 212 283 85
40% 212 283 106
30% 212 284 129
Entity #25: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 152 79
95% 142 155 124
90% 142 155 132
70% 142 155 154
50% 142 155 200
40% 208 278 111
30% 224 302 114
Entity #26: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 171 52
95% 151 171 90
90% 151 171 99
70% 151 171 120
50% 151 171 168
40% 231 309 81
30% 231 309 103
Entity #27: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 148 86
95% 142 156 123
90% 142 156 131
70% 142 156 152
50% 162 188 151
40% 228 300 95
30% 228 300 116
Entity #28: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 162 69
95% 150 162 115
90% 150 162 123
70% 150 162 143
50% 150 163 181
40% 228 297 97
30% 228 297 117
Entity #29: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 67
95% 150 164 111
90% 150 164 119
70% 150 164 139
50% 150 164 178
40% 150 164 210
30% 150 164 228
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 60
95% 150 164 102
90% 150 164 110
70% 150 164 131
50% 233 306 66
40% 233 306 86
30% 233 307 110
Entity #30: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 66
95% 150 164 110
90% 150 164 118
70% 150 164 138
50% 164 190 147
40% 164 190 174
30% 164 190 195
Entity #31: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 118 133
95% 102 118 193
90% 102 118 206
70% 116 144 183
50% 182 256 102
40% 182 256 127
30% 182 256 145
Entity #32: Chains: e - 50S ribosomal protein L7/L12 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 10 4899
95% 5 10 5480
90% 5 10 5489
70% 5 10 5392
50% 5 10 5057
40% 5 10 4735
30% 5 10 4283
Entity #33: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #34: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 148 84
95% 150 164 101
90% 150 164 109
70% 150 164 130
50% 169 191 146
40% 169 191 173
30% 236 308 106
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 149 81
95% 151 165 95
90% 151 165 103
70% 165 187 109
50% 232 306 64
40% 232 306 84
30% 232 306 107
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 62
95% 150 164 103
90% 150 164 111
70% 150 164 132
50% 163 196 140
40% 229 310 80
30% 336 449 51
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 38 586
95% 25 41 703
90% 25 41 735
70% 39 63 473
50% 106 204 122
40% 106 207 149
30% 106 209 173
Entity #9: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 145 98
95% 150 164 106
90% 150 164 114
70% 164 186 113
50% 231 314 57
40% 231 315 76
30% 338 454 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.