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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 50S ribosomal subunit A. The full asymmetric unit also contains PDB entries 4KBT (30S subunit A), 4KBV (30S subunit B), and 4KBW (50S subunit B).
Sequence Clustering and Redundancy Reduction Results
4KBU
Sequence Clusters for the Sequence Entities in PDB 4KBU
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 68 312
95% 71 92 299
90% 71 93 313
70% 71 93 334
50% 72 130 244
40% 72 130 270
30% 78 172 208
Entity #10: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 62
95% 150 164 104
90% 150 164 112
70% 150 164 133
50% 150 166 171
40% 228 299 91
30% 328 435 53
Entity #11: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 149 83
95% 150 165 98
90% 150 165 106
70% 166 190 108
50% 230 301 68
40% 230 301 90
30% 230 301 110
Entity #12: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 169 49
95% 151 169 86
90% 151 169 95
70% 151 169 115
50% 229 301 59
40% 229 303 77
30% 229 305 99
Entity #13: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 21 1637
95% 15 21 2148
90% 15 21 2180
70% 15 21 2191
50% 228 298 69
40% 228 298 93
30% 228 298 113
Entity #14: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 148 85
95% 150 164 105
90% 150 164 113
70% 150 164 134
50% 150 164 176
40% 150 164 208
30% 150 164 227
Entity #15: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 75
95% 150 164 107
90% 150 164 115
70% 150 164 135
50% 229 304 60
40% 229 305 79
30% 229 305 101
Entity #16: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 64
95% 150 164 109
90% 150 164 117
70% 150 164 137
50% 164 192 144
40% 228 299 92
30% 228 299 112
Entity #17: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 171 52
95% 152 172 87
90% 152 172 98
70% 152 172 119
50% 216 284 79
40% 216 284 103
30% 216 286 125
Entity #18: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 165 57
95% 150 165 99
90% 150 165 107
70% 150 165 129
50% 166 189 148
40% 230 305 82
30% 297 383 70
Entity #19: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 63
95% 150 164 108
90% 150 164 116
70% 150 164 136
50% 150 166 172
40% 214 279 109
30% 214 281 130
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 58
95% 150 164 100
90% 150 164 108
70% 164 186 111
50% 228 297 70
40% 228 297 94
30% 228 297 115
Entity #20: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 60
95% 151 165 94
90% 151 165 102
70% 151 165 127
50% 151 165 170
40% 151 165 203
30% 151 165 223
Entity #21: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 149 78
95% 151 165 92
90% 151 165 101
70% 151 165 125
50% 230 302 63
40% 230 302 83
30% 230 302 103
Entity #22: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 139 107
95% 150 161 118
90% 150 161 126
70% 150 161 145
50% 150 161 183
40% 150 161 214
30% 150 161 233
Entity #23: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 10 4919
95% 5 10 5489
90% 5 10 5494
70% 5 10 5399
50% 5 10 5071
40% 5 10 4748
30% 5 10 4298
Entity #24: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 159 71
95% 146 159 120
90% 146 159 128
70% 146 159 148
50% 210 279 85
40% 210 279 108
30% 210 280 131
Entity #25: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 152 79
95% 142 155 124
90% 142 155 132
70% 142 155 154
50% 142 155 197
40% 206 274 115
30% 222 298 114
Entity #26: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 169 54
95% 149 169 91
90% 149 169 100
70% 149 169 122
50% 149 169 167
40% 227 303 86
30% 227 303 106
Entity #27: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 148 86
95% 142 156 123
90% 142 156 131
70% 142 156 152
50% 162 188 150
40% 226 296 96
30% 226 296 117
Entity #28: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 162 69
95% 150 162 115
90% 150 162 123
70% 150 162 143
50% 150 163 180
40% 226 294 97
30% 226 294 118
Entity #29: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 66
95% 150 164 111
90% 150 164 119
70% 150 164 139
50% 150 164 177
40% 150 164 209
30% 150 164 228
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 59
95% 150 164 102
90% 150 164 110
70% 150 164 131
50% 231 302 66
40% 231 302 88
30% 231 303 107
Entity #30: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 65
95% 150 164 110
90% 150 164 118
70% 150 164 138
50% 164 190 146
40% 164 190 174
30% 164 190 194
Entity #31: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 118 129
95% 102 118 188
90% 102 118 201
70% 116 144 180
50% 180 252 102
40% 180 252 128
30% 180 252 149
Entity #32: Chains: e - 50S ribosomal protein L7/L12 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 10 4857
95% 5 10 5440
90% 5 10 5448
70% 5 10 5347
50% 5 10 5028
40% 5 10 4705
30% 5 10 4257
Entity #33: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #34: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 148 84
95% 150 164 101
90% 150 164 109
70% 150 164 130
50% 169 191 145
40% 169 191 173
30% 234 304 104
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 149 81
95% 151 165 95
90% 151 165 103
70% 165 187 109
50% 230 302 64
40% 230 302 84
30% 230 302 105
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 164 61
95% 150 164 103
90% 150 164 111
70% 150 164 132
50% 163 196 136
40% 227 306 80
30% 321 432 55
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 38 530
95% 25 41 680
90% 25 41 711
70% 39 63 467
50% 104 200 127
40% 104 203 151
30% 104 205 174
Entity #9: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 145 97
95% 150 164 106
90% 150 164 114
70% 164 186 112
50% 229 310 58
40% 229 311 75
30% 329 443 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.