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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 50S ribosomal subunit A. The full asymmetric unit also contains PDB entries 4KBT (30S subunit A), 4KBV (30S subunit B), and 4KBW (50S subunit B).
Sequence Clustering and Redundancy Reduction Results
4KBU
Sequence Clusters for the Sequence Entities in PDB 4KBU
Entity #1: Chains: C - 50S ribosomal protein L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 68 310
95% 71 92 297
90% 71 93 308
70% 71 93 330
50% 72 130 240
40% 72 130 265
30% 78 172 206
Entity #10: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 68
95% 142 156 112
90% 142 156 120
70% 142 156 140
50% 142 158 179
40% 220 290 92
30% 293 399 62
Entity #11: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 141 86
95% 142 157 105
90% 142 157 114
70% 158 182 110
50% 222 292 70
40% 222 292 91
30% 222 292 113
Entity #12: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 161 51
95% 143 161 89
90% 143 161 98
70% 143 161 120
50% 221 292 63
40% 221 294 80
30% 221 296 99
Entity #13: Chains: S - 50S ribosomal protein L18 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 21 1559
95% 15 21 2066
90% 15 21 2100
70% 15 21 2129
50% 220 289 73
40% 220 289 97
30% 220 289 119
Entity #14: Chains: T - 50S ribosomal protein L19 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 140 100
95% 142 156 113
90% 142 156 121
70% 142 156 141
50% 142 156 183
40% 142 156 218
30% 142 156 233
Entity #15: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 148 78
95% 142 156 115
90% 142 156 123
70% 142 156 142
50% 221 295 64
40% 221 296 83
30% 221 296 105
Entity #16: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 70
95% 142 156 117
90% 142 156 125
70% 142 156 144
50% 156 184 148
40% 220 290 94
30% 220 290 115
Entity #17: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 163 55
95% 144 164 93
90% 144 164 101
70% 144 164 124
50% 208 275 86
40% 208 275 111
30% 208 277 129
Entity #18: Chains: X - 50S ribosomal protein L23 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 157 63
95% 142 157 106
90% 142 157 115
70% 142 157 136
50% 158 181 151
40% 222 296 86
30% 289 374 73
Entity #19: Chains: Y - 50S ribosomal protein L24 protein, length: 107 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 69
95% 142 156 116
90% 142 156 124
70% 142 156 143
50% 142 158 180
40% 206 270 115
30% 206 272 133
Entity #2: Chains: D - 50S ribosomal protein L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 64
95% 142 156 107
90% 142 156 116
70% 156 178 113
50% 220 288 74
40% 220 288 98
30% 220 288 121
Entity #20: Chains: Z - 50S ribosomal protein L25 protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 66
95% 143 157 102
90% 143 157 110
70% 143 157 133
50% 143 157 178
40% 143 157 212
30% 143 157 230
Entity #21: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 141 82
95% 143 157 100
90% 143 157 108
70% 143 157 130
50% 222 293 66
40% 222 293 87
30% 222 293 107
Entity #22: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 131 112
95% 142 153 122
90% 142 153 130
70% 142 153 153
50% 142 153 197
40% 142 153 231
30% 142 153 244
Entity #23: Chains: 4 - 50S ribosomal protein L31 protein, length: 35 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 10 4874
95% 5 10 5445
90% 5 10 5451
70% 5 10 5358
50% 5 10 5040
40% 5 10 4719
30% 5 10 4272
Entity #24: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 151 75
95% 138 151 123
90% 138 151 132
70% 138 151 156
50% 202 270 89
40% 202 270 114
30% 202 271 135
Entity #25: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 144 83
95% 134 147 128
90% 134 147 137
70% 134 147 161
50% 134 147 206
40% 198 265 117
30% 214 289 120
Entity #26: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 161 58
95% 141 161 97
90% 141 161 105
70% 141 161 128
50% 141 161 173
40% 219 294 89
30% 219 294 110
Entity #27: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 140 102
95% 134 148 126
90% 134 148 135
70% 134 148 158
50% 154 180 152
40% 218 287 99
30% 218 287 122
Entity #28: Chains: 6 - 50S ribosomal protein L33 protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 154 74
95% 142 154 121
90% 142 154 129
70% 142 154 151
50% 142 155 188
40% 218 285 101
30% 218 285 125
Entity #29: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 72
95% 142 156 119
90% 142 156 127
70% 142 156 146
50% 142 156 185
40% 142 156 221
30% 142 156 235
Entity #3: Chains: E - 50S ribosomal protein L3 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 65
95% 142 156 110
90% 142 156 118
70% 142 156 138
50% 223 293 69
40% 223 293 90
30% 223 294 111
Entity #30: Chains: 8 - 50S ribosomal protein L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 71
95% 142 156 118
90% 142 156 126
70% 142 156 145
50% 156 182 150
40% 156 182 178
30% 156 182 199
Entity #31: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 110 149
95% 94 110 218
90% 94 110 231
70% 108 136 195
50% 172 243 106
40% 172 243 129
30% 172 243 150
Entity #32: Chains: e - 50S ribosomal protein L7/L12 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 10 4811
95% 5 10 5394
90% 5 10 5402
70% 5 10 5305
50% 5 10 4998
40% 5 10 4677
30% 5 10 4233
Entity #33: Chains: f,g - 50S ribosomal protein L7/L12 protein, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #34: Chains: h - 50S ribosomal protein L7/L12 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #35: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #36: Chains: A - 23S ribosomal RNA rna, length: 2879 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 50S ribosomal protein L4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 140 96
95% 142 156 109
90% 142 156 117
70% 142 156 137
50% 161 183 149
40% 161 183 177
30% 226 295 108
Entity #5: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 141 85
95% 143 157 103
90% 143 157 111
70% 157 179 111
50% 222 293 67
40% 222 293 88
30% 222 293 109
Entity #6: Chains: H - 50S ribosomal protein L6 protein, length: 167 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 156 67
95% 142 156 111
90% 142 156 119
70% 142 156 139
50% 155 188 144
40% 219 297 84
30% 292 402 60
Entity #7: Chains: J - 50S ribosomal protein L10 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: K - 50S ribosomal protein L11 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 38 525
95% 25 41 678
90% 25 41 709
70% 39 63 462
50% 104 199 127
40% 104 202 152
30% 104 204 173
Entity #9: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 137 104
95% 142 156 114
90% 142 156 122
70% 156 178 114
50% 221 301 62
40% 221 302 79
30% 294 407 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.