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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 30S ribosomal subunit A. The full asymmetric unit also contains PDB entries 4KBU (50S subunit A), 4KBV (30S subunit B), and 4KBW (50S subunit B).
Sequence Clustering and Redundancy Reduction Results
4KBT
Sequence Clusters for the Sequence Entities in PDB 4KBT
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 255 25
95% 225 256 39
90% 225 256 43
70% 225 256 55
50% 225 256 96
40% 289 363 55
30% 289 363 77
Entity #10: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 255 27
95% 225 255 44
90% 225 255 47
70% 225 255 59
50% 289 363 42
40% 299 403 39
30% 299 403 53
Entity #11: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 224 37
95% 225 262 36
90% 225 262 38
70% 289 375 24
50% 289 375 33
40% 289 375 47
30% 289 375 71
Entity #12: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 256 24
95% 225 256 42
90% 225 256 45
70% 225 256 57
50% 289 365 39
40% 289 365 53
30% 297 401 57
Entity #13: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 254 28
95% 225 254 49
90% 225 254 52
70% 225 254 64
50% 225 254 99
40% 225 254 124
30% 225 254 144
Entity #14: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 258 21
95% 230 263 35
90% 230 263 37
70% 230 263 48
50% 297 376 32
40% 297 376 45
30% 297 376 69
Entity #15: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 250 30
95% 225 255 46
90% 225 255 49
70% 225 255 61
50% 225 255 97
40% 225 255 122
30% 289 363 78
Entity #16: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 92 219
95% 221 249 51
90% 224 253 53
70% 224 253 65
50% 224 253 100
40% 224 253 126
30% 224 253 146
Entity #17: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 26 1130
95% 24 36 1041
90% 24 36 1064
70% 24 36 1093
50% 24 36 1157
40% 24 36 1189
30% 24 36 1178
Entity #18: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 35 741
95% 24 35 1070
90% 24 35 1092
70% 24 35 1130
50% 291 366 38
40% 291 366 52
30% 291 366 75
Entity #19: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 61 359
95% 225 254 47
90% 225 254 50
70% 225 254 62
50% 225 254 98
40% 225 254 123
30% 225 254 143
Entity #2: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 35 734
95% 24 35 1063
90% 24 35 1085
70% 24 35 1119
50% 48 79 449
40% 48 80 467
30% 48 80 487
Entity #20: Chains: A - 16S ribosomal RNA rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: V - messenger RNA rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #22: Chains: W - tRNA-Met rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - Elongation factor G protein, length: 687 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 21 1387
95% 23 34 1044
90% 23 35 1015
70% 23 35 1048
50% 36 52 672
40% 36 52 697
30% 38 54 670
Entity #24: Chains: U - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 223 248 32
95% 226 256 40
90% 226 256 44
70% 226 256 56
50% 290 363 40
40% 290 364 54
30% 290 364 76
Entity #4: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 255 26
95% 226 255 43
90% 226 255 46
70% 226 255 58
50% 291 367 37
40% 291 367 51
30% 291 369 72
Entity #5: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 260 18
95% 234 266 34
90% 234 266 36
70% 234 266 47
50% 234 266 88
40% 234 266 112
30% 260 313 94
Entity #6: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 259 20
95% 227 260 37
90% 227 260 39
70% 227 260 51
50% 254 308 57
40% 254 309 73
30% 254 309 97
Entity #7: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 255 23
95% 224 255 41
90% 227 259 40
70% 227 259 52
50% 293 369 36
40% 294 371 49
30% 303 408 50
Entity #8: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 113 133
95% 225 255 45
90% 225 255 48
70% 225 255 60
50% 289 363 41
40% 289 363 56
30% 297 399 59
Entity #9: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 223 252 29
95% 225 254 48
90% 225 254 51
70% 225 254 63
50% 295 369 34
40% 295 369 48
30% 295 374 67
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.