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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 30S ribosomal subunit A. The full asymmetric unit also contains PDB entries 4KBU (50S subunit A), 4KBV (30S subunit B), and 4KBW (50S subunit B).
Sequence Clustering and Redundancy Reduction Results
4KBT
Sequence Clusters for the Sequence Entities in PDB 4KBT
Entity #1: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 268 23
95% 236 269 38
90% 236 269 41
70% 236 269 51
50% 236 269 90
40% 300 376 53
30% 300 376 75
Entity #10: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 268 25
95% 236 268 43
90% 236 268 45
70% 236 268 55
50% 300 376 41
40% 344 450 35
30% 344 450 45
Entity #11: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 237 35
95% 236 275 35
90% 236 275 37
70% 300 388 24
50% 300 388 33
40% 300 388 44
30% 300 388 68
Entity #12: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 269 22
95% 236 269 41
90% 236 269 43
70% 236 269 53
50% 300 378 38
40% 300 378 51
30% 342 448 49
Entity #13: Chains: N - 30S ribosomal protein S14 type Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 267 26
95% 236 267 48
90% 236 267 50
70% 236 267 60
50% 236 267 93
40% 236 267 119
30% 236 267 140
Entity #14: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 271 20
95% 241 276 32
90% 241 276 34
70% 241 276 47
50% 308 389 32
40% 308 389 43
30% 308 389 67
Entity #15: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 263 28
95% 236 268 45
90% 236 268 47
70% 236 268 57
50% 236 268 91
40% 236 268 117
30% 300 376 76
Entity #16: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 92 221
95% 232 262 49
90% 235 266 51
70% 235 266 61
50% 235 266 94
40% 235 266 120
30% 235 266 142
Entity #17: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 28 1122
95% 24 38 1050
90% 24 38 1073
70% 24 38 1104
50% 24 38 1167
40% 24 38 1183
30% 24 38 1160
Entity #18: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 37 766
95% 24 37 1074
90% 24 37 1095
70% 24 37 1133
50% 302 379 37
40% 302 379 49
30% 302 379 72
Entity #19: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 61 362
95% 236 267 46
90% 236 267 48
70% 236 267 58
50% 236 267 92
40% 236 267 118
30% 236 267 139
Entity #2: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 37 760
95% 24 37 1065
90% 24 37 1087
70% 24 37 1120
50% 48 81 439
40% 48 82 461
30% 48 82 477
Entity #20: Chains: A - 16S ribosomal RNA rna, length: 1511 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: V - messenger RNA rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #22: Chains: W - tRNA-Met rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - Elongation factor G protein, length: 687 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 21 1478
95% 23 36 1053
90% 23 37 1038
70% 23 37 1064
50% 36 54 689
40% 36 54 720
30% 38 56 690
Entity #24: Chains: U - Viomycin protein, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 261 29
95% 237 269 39
90% 237 269 42
70% 237 269 52
50% 301 376 39
40% 301 377 52
30% 301 377 74
Entity #4: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 268 24
95% 237 268 42
90% 237 268 44
70% 237 268 54
50% 302 380 36
40% 302 380 48
30% 302 382 71
Entity #5: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 273 18
95% 245 279 29
90% 245 279 30
70% 245 279 44
50% 245 279 83
40% 245 279 106
30% 271 326 94
Entity #6: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 272 19
95% 238 273 36
90% 238 273 38
70% 238 273 49
50% 265 321 56
40% 265 322 74
30% 265 322 96
Entity #7: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 268 21
95% 235 268 40
90% 238 272 39
70% 238 272 50
50% 304 382 35
40% 305 384 46
30% 348 455 44
Entity #8: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 113 139
95% 236 268 44
90% 236 268 46
70% 236 268 56
50% 300 376 40
40% 300 376 54
30% 342 446 52
Entity #9: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 265 27
95% 236 267 47
90% 236 267 49
70% 236 267 59
50% 306 382 34
40% 306 382 45
30% 306 387 65
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.