Sequence Similarity Clusters for the Entities in PDB 4K8Z

Entity #1 | Chains: A
DNA polymerase protein, length: 774 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27755
95 % 3 9 8267 Flexibility: Medium
Max RMSD: 5.3, Avg RMSD: 3.1
PDBFlex
90 % 5 19 3499
70 % 7 34 1710
50 % 7 34 1738
40 % 7 34 1724
30 % 7 36 1543
Entity #2 | Chains: T
DNA (5'-D(*AP*AP*AP*TP*TP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
DNA (5'-D(*CP*GP*CP*GP*AP*AP*CP*TP*GP*CP*GP*(2DA))-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures