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Poliovirus polymerase elongation complex (r4_form)
Sequence Clustering and Redundancy Reduction Results
4K4T
Cluster # 422 Members. Sequence cutoff: 40% Cluster size: 48 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3CDU 1 A RNA-directed RNA polymerase 3D-POL 103903   2.7.7.48    3.4.22.28   
2 4NLR 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
3 1RA6 1 A Genome polyprotein RNA-directed RNA polymerase (residue 1748-2208) 12081   2.7.7.48    3.4.22.28   
4 4NLS 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
5 4K4Z 1 A, E, I, M Polyprotein UNP RESIDUES 1724-2185 12072  
6 4NLW 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
7 4NLU 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
8 3OL9 1 A, E, I, M Polymerase 12080   2.7.7.48   
9 3DDK 1 A RNA polymerase B3 3Dpol 12072  
10 4NLP 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
11 4NLO 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
12 4NLY 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
13 4NLV 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
14 3CDW 1 A RNA-directed RNA polymerase 3D-POL 103903   2.7.7.48    3.4.22.28   
15 4K4X 1 A, E, I, M Polyprotein UNP RESIDUES 1724-2185 12072  
16 4K4S 1 A, E RNA-directed RNA polymerase 3D-POL unp residues 1749-2209 12081   2.7.7.48    3.4.22.28   
17 4NLQ 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
18 2IM0 1 A poliovirus polymerase RNA-directed RNA polymerase, residues 1748-2208 12081   2.7.7.48   
19 1RA7 1 A Genome polyprotein RNA-directed RNA polymerase (residue 1748-2208) 12081   2.7.7.48    3.4.22.28   
20 3N6M 1 A RNA-dependent RNA polymerase 39054  
21 1TQL 1 A RNA-directed RNA polymerase 12080   2.7.7.48    3.4.22.28   
22 2IM2 1 A poliovirus polymerase RNA-directed RNA polymerase, residues 1748-2208 12081   2.7.7.48   
23 3OLB 1 A, E, I, M Polymerase UNP RESIDUES 1749-2209 12080   2.7.7.48   
24 3OL6 1 A, E, I, M Polymerase UNP RESIDUES 1749-2209 12080   2.7.7.48   
25 1XR7 1 A, B Genome polyprotein RNA-DIRECTED RNA POLYMERASE 31708   2.7.7.48    3.4.22.28   
26 4NLT 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
27 4NLX 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
28 1TP7 1 A, B, C, D Genome polyprotein RNA-directed RNA Polymerase (residues 1694-2153) 31708   2.7.7.48    3.4.22.28   
29 1RDR 1 A POLIOVIRUS 3D POLYMERASE 12081   2.7.7.48    3.4.22.28   
30 2ILZ 1 A poliovirus polymerase RNA-directed RNA polymerase, residues 1748-2208 12081   2.7.7.48   
31 1XR6 1 A Genome polyprotein RNA-DIRECTED RNA POLYMERASE 12129   2.7.7.48    3.4.22.28   
32 4K4Y 1 A, E, I, M Polyprotein 12072  
33 3OLA 1 A, E, I, M Polymerase UNP RESIDUES 1749-2209 12080   2.7.7.48   
34 3N6L 1 A RNA-dependent RNA polymerase 39054  
35 2IM1 1 A poliovirus polymerase RNA-directed RNA polymerase, residues 1748-2208 12081   2.7.7.48   
36 4K4T 1 A, E RNA-directed RNA polymerase 3D-POL unp residues 1749-2209 12081   2.7.7.48    3.4.22.28   
37 4K4W 1 A, E RNA-directed RNA polymerase 3D-POL unp residues 1749-2209 12081   2.7.7.48    3.4.22.28   
38 2ILY 1 A Poliovirus polymerase RNA-directed RNA polymerase, residues 461-1748 12081   2.7.7.48   
39 4IKA 1 A 3Dpol UNP residues 1732-2193 39054  
40 4K50 1 A, E, I, M RNA polymerase 3D-POL unp residues 1694-2153 31708   2.7.7.48    3.4.22.28   
41 2IM3 1 A poliovirus polymerase RNA-directed RNA polymerase, residues 1748-2208 12081   2.7.7.48   
42 4K4V 1 A, E RNA-directed RNA polymerase 3D-POL unp residues 1749-2209 12081   2.7.7.48    3.4.22.28   
43 3OL7 1 A, E, I, M Polymerase UNP RESIDUES 1749-2209 12080   2.7.7.48    3.4.22.28   
44 3OL8 1 A, E, I, M Polymerase UNP RESIDUES 1749-2209 12080   2.7.7.48   
45 4K4U 1 A, E RNA-directed RNA polymerase 3D-POL unp residues 1749-2209 12081   2.7.7.48    3.4.22.28   
46 2IJF 1 A RNA-directed RNA polymerase 12081   2.7.7.48   
47 3N6N 1 A RNA-dependent RNA polymerase 39054  
48 1XR5 1 A Genome polyprotein RNA-DIRECTED RNA POLYMERASE 12131   2.7.7.48    3.4.22.28   
 
Sequence Clusters for the Sequence Entities in PDB 4K4T
Entity #1: Chains: A,E - RNA-directed RNA polymerase 3D-POL protein, length: 471 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 976
95% 25 33 562
90% 25 33 595
70% 31 39 464
50% 36 48 399
40% 36 48 422
30% 44 67 323
Entity #2: Chains: B,F - RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*GP*AP*AP*A)-3') rna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C,G - RNA (5'-R(P*UP*GP*UP*UP*CP*CP*GP*AP*GP*AP*GP*A)-3') rna, length: 12 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D,H - RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') rna, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.