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Poliovirus polymerase elongation complex (r4_form)
Sequence Clustering and Redundancy Reduction Results
4K4T
Cluster # 328 Members. Sequence cutoff: 30% Cluster size: 70 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4WFX 1 A RNA-directed RNA polymerase unp residues 1724-2185 103903   2.7.7.48    3.4.22.28   
2 4WFZ 1 A RNA-directed RNA polymerase unp residues 1724-2185 103903   2.7.7.48    3.4.22.28   
3 1U09 1 A polyprotein RNA-dependent RNA polymerase 244367   2.7.7.48   
4 4WFY 1 A RNA-directed RNA polymerase unp residues 1724-2185 103903   2.7.7.48    3.4.22.28   
5 3CDU 1 A RNA-directed RNA polymerase 3D-POL 103903   2.7.7.48    3.4.22.28   
6 4NLR 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
7 1RA6 1 A Genome polyprotein RNA-directed RNA polymerase (residue 1748-2208) 12081   2.7.7.48    3.4.22.28   
8 4NLS 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
9 4K4Z 1 A, E, I, M Polyprotein UNP RESIDUES 1724-2185 12072  
10 4NLW 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
11 4NLU 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
12 3OL9 1 A, E, I, M Polymerase 12080   2.7.7.48   
13 3DDK 1 A RNA polymerase B3 3Dpol 12072  
14 4NYZ 1 A Genome polyprotein UNP residues 1834-2293 12107   2.7.7.48   
15 4NLP 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
16 3KMQ 1 A 3D polymerase 12116   2.7.7.48   
17 4NLO 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
18 4NLY 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
19 4NLV 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
20 3CDW 1 A RNA-directed RNA polymerase 3D-POL 103903   2.7.7.48    3.4.22.28   
21 3KMS 1 A 3D polymerase 12116   2.7.7.48   
22 4K4X 1 A, E, I, M Polyprotein UNP RESIDUES 1724-2185 12072  
23 4K4S 1 A, E RNA-directed RNA polymerase 3D-POL unp residues 1749-2209 12081   2.7.7.48    3.4.22.28   
24 4NLQ 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
25 2IM0 1 A poliovirus polymerase RNA-directed RNA polymerase, residues 1748-2208 12081   2.7.7.48   
26 1RA7 1 A Genome polyprotein RNA-directed RNA polymerase (residue 1748-2208) 12081   2.7.7.48    3.4.22.28   
27 3N6M 1 A RNA-dependent RNA polymerase 39054  
28 1TQL 1 A RNA-directed RNA polymerase 12080   2.7.7.48    3.4.22.28   
29 3NKY 1 A 3D polymerase 12116  
30 2IM2 1 A poliovirus polymerase RNA-directed RNA polymerase, residues 1748-2208 12081   2.7.7.48   
31 3OLB 1 A, E, I, M Polymerase UNP RESIDUES 1749-2209 12080   2.7.7.48   
32 3KOA 1 A 3D polymerase 12116   2.7.7.48   
33 3OL6 1 A, E, I, M Polymerase UNP RESIDUES 1749-2209 12080   2.7.7.48   
34 1XR7 1 A, B Genome polyprotein RNA-DIRECTED RNA POLYMERASE 31708   2.7.7.48    3.4.22.28   
35 4NLT 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
36 4NLX 1 A RNA-directed RNA polymerase 3D-POL 12081   2.7.7.48    3.4.22.28   
37 4IQX 1 A 3D polymerase 12116  
38 1TP7 1 A, B, C, D Genome polyprotein RNA-directed RNA Polymerase (residues 1694-2153) 31708   2.7.7.48    3.4.22.28   
39 1RDR 1 A POLIOVIRUS 3D POLYMERASE 12081   2.7.7.48    3.4.22.28   
40 2ILZ 1 A poliovirus polymerase RNA-directed RNA polymerase, residues 1748-2208 12081   2.7.7.48   
41 1XR6 1 A Genome polyprotein RNA-DIRECTED RNA POLYMERASE 12129   2.7.7.48    3.4.22.28   
42 4K4Y 1 A, E, I, M Polyprotein 12072  
43 3OLA 1 A, E, I, M Polymerase UNP RESIDUES 1749-2209 12080   2.7.7.48   
44 3N6L 1 A RNA-dependent RNA polymerase 39054  
45 3NMA 1 A 3D polymerase 12116  
46 2IM1 1 A poliovirus polymerase RNA-directed RNA polymerase, residues 1748-2208 12081   2.7.7.48   
47 4K4T 1 A, E RNA-directed RNA polymerase 3D-POL unp residues 1749-2209 12081   2.7.7.48    3.4.22.28   
48 4K4W 1 A, E RNA-directed RNA polymerase 3D-POL unp residues 1749-2209 12081   2.7.7.48    3.4.22.28   
49 3NL0 1 A 3D polymerase 12116  
50 2ILY 1 A Poliovirus polymerase RNA-directed RNA polymerase, residues 461-1748 12081   2.7.7.48   
51 3KLV 1 A 3D polymerase 12116   2.7.7.48   
52 4IKA 1 A 3Dpol UNP residues 1732-2193 39054  
53 2E9T 3 A, D RNA-dependent RNA polymerase 244367   2.7.7.48   
54 4K50 1 A, E, I, M RNA polymerase 3D-POL unp residues 1694-2153 31708   2.7.7.48    3.4.22.28   
55 2IM3 1 A poliovirus polymerase RNA-directed RNA polymerase, residues 1748-2208 12081   2.7.7.48   
56 4K4V 1 A, E RNA-directed RNA polymerase 3D-POL unp residues 1749-2209 12081   2.7.7.48    3.4.22.28   
57 3OL7 1 A, E, I, M Polymerase UNP RESIDUES 1749-2209 12080   2.7.7.48    3.4.22.28   
58 3OL8 1 A, E, I, M Polymerase UNP RESIDUES 1749-2209 12080   2.7.7.48   
59 4K4U 1 A, E RNA-directed RNA polymerase 3D-POL unp residues 1749-2209 12081   2.7.7.48    3.4.22.28   
60 2IJF 1 A RNA-directed RNA polymerase 12081   2.7.7.48   
61 3KNA 1 A 3D polymerase 12116   2.7.7.48   
62 2EC0 3 A, D RNA-dependent RNA polymerase 244367   2.7.7.48   
63 2E9R 3 X RNA-dependent RNA polymerase 244367   2.7.7.48   
64 4NZ0 1 A, B, C, D, E, F Genome polyprotein UNP residues 1834-2293 12107   2.7.7.48   
65 3N6N 1 A RNA-dependent RNA polymerase 39054  
66 2F8E 1 X RNA-dependent RNA polymerase 12116   2.7.7.48   
67 2E9Z 3 A RNA-dependent RNA polymerase 244367   2.7.7.48   
68 1XR5 1 A Genome polyprotein RNA-DIRECTED RNA POLYMERASE 12131   2.7.7.48    3.4.22.28   
69 1WNE 3 A RNA-dependent RNA polymerase 244367   2.7.7.48   
70 2D7S 1 A RNA-dependent RNA polymerase 244367   2.7.7.48   
 
Sequence Clusters for the Sequence Entities in PDB 4K4T
Entity #1: Chains: A,E - RNA-directed RNA polymerase 3D-POL protein, length: 471 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 8 1061
95% 25 33 572
90% 25 33 604
70% 34 42 443
50% 39 51 390
40% 39 51 412
30% 47 70 328
Entity #2: Chains: B,F - RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*GP*AP*AP*A)-3') rna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C,G - RNA (5'-R(P*UP*GP*UP*UP*CP*CP*GP*AP*GP*AP*GP*A)-3') rna, length: 12 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D,H - RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') rna, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.