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Crystal structure of Thermus thermophilus 70S containing tRNAs and mRNA stop codon with pseudouridine
Sequence Clustering and Redundancy Reduction Results
4K0Q
Sequence Clusters for the Sequence Entities in PDB 4K0Q
Entity #1: Chains: A - 23S rRNA rna, length: 2915 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S Ribosomal protein L10 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: N - 50S Ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 159 71
95% 95 159 120
90% 95 159 128
70% 95 159 148
50% 134 279 85
40% 134 279 108
30% 134 280 131
Entity #12: Chains: O - 50S Ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 145 97
95% 95 164 106
90% 95 164 114
70% 99 186 112
50% 139 310 58
40% 139 311 75
30% 235 443 48
Entity #13: Chains: P - 50S Ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 62
95% 95 164 104
90% 95 164 112
70% 95 164 133
50% 95 166 171
40% 138 299 91
30% 234 435 53
Entity #14: Chains: Q - 50S Ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 149 83
95% 95 165 98
90% 95 165 106
70% 99 190 108
50% 138 301 68
40% 138 301 90
30% 138 301 110
Entity #15: Chains: R - 50S Ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 169 49
95% 96 169 86
90% 96 169 95
70% 96 169 115
50% 139 301 59
40% 139 303 77
30% 139 305 99
Entity #16: Chains: S - 50S Ribosomal protein L18 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 21 1637
95% 2 21 2148
90% 2 21 2180
70% 2 21 2191
50% 138 298 69
40% 138 298 93
30% 138 298 113
Entity #17: Chains: T - 50S Ribosomal protein L19 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 148 85
95% 95 164 105
90% 95 164 113
70% 95 164 134
50% 95 164 176
40% 95 164 208
30% 95 164 227
Entity #18: Chains: U - 50S Ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 34786
95% 95 164 107
90% 95 164 115
70% 95 164 135
50% 139 304 60
40% 139 305 79
30% 139 305 101
Entity #19: Chains: V - 50S Ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 64
95% 95 164 109
90% 95 164 117
70% 95 164 137
50% 99 192 144
40% 138 299 92
30% 138 299 112
Entity #2: Chains: B - 5S rRNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: W - 50S Ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 171 52
95% 97 172 87
90% 97 172 98
70% 97 172 119
50% 136 284 79
40% 136 284 103
30% 136 286 125
Entity #21: Chains: X - 50S Ribosomal protein L23 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 165 57
95% 95 165 99
90% 95 165 107
70% 95 165 129
50% 99 189 148
40% 138 305 82
30% 205 383 70
Entity #22: Chains: Y - 50S Ribosomal protein L24 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 63
95% 95 164 108
90% 95 164 116
70% 95 164 136
50% 95 166 172
40% 134 279 109
30% 134 281 130
Entity #23: Chains: Z - 50S Ribosomal protein L25 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 60
95% 96 165 94
90% 96 165 102
70% 96 165 127
50% 96 165 170
40% 96 165 203
30% 96 165 223
Entity #24: Chains: 0 - 50S Ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 149 78
95% 96 165 92
90% 96 165 101
70% 96 165 125
50% 139 302 63
40% 139 302 83
30% 139 302 103
Entity #25: Chains: 1 - 50S Ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 22 1549
95% 95 161 118
90% 95 161 126
70% 95 161 145
50% 95 161 183
40% 95 161 214
30% 95 161 233
Entity #26: Chains: 2 - 50S Ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 152 79
95% 95 155 124
90% 95 155 132
70% 95 155 154
50% 95 155 197
40% 134 274 115
30% 138 298 114
Entity #27: Chains: 3 - 50S Ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 169 54
95% 96 169 91
90% 96 169 100
70% 96 169 122
50% 96 169 167
40% 139 303 86
30% 139 303 106
Entity #28: Chains: 4 - 50S Ribosomal protein L31 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 4182
95% 3 11 4797
90% 3 11 4819
70% 3 11 4743
50% 3 11 4535
40% 3 11 4251
30% 3 11 3872
Entity #29: Chains: 5 - 50S Ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 148 86
95% 95 156 123
90% 95 156 131
70% 95 156 152
50% 99 188 150
40% 138 296 96
30% 138 296 117
Entity #3: Chains: C - 50S Ribosomal protein L1 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31045
95% 2 2 23812
90% 2 2 22929
70% 2 2 20752
50% 2 2 17944
40% 3 6 3481
30% 3 6 3226
Entity #30: Chains: 6 - 50S Ribosomal protein L33 protein, length: 44 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 162 69
95% 95 162 115
90% 95 162 123
70% 95 162 143
50% 95 163 180
40% 137 294 97
30% 137 294 118
Entity #31: Chains: 7 - 50S Ribosomal protein L34 protein, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 66
95% 95 164 111
90% 95 164 119
70% 95 164 139
50% 95 164 177
40% 95 164 209
30% 95 164 228
Entity #32: Chains: 8 - 50S Ribosomal protein L35 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 65
95% 95 164 110
90% 95 164 118
70% 95 164 138
50% 99 190 146
40% 99 190 174
30% 99 190 194
Entity #33: Chains: 9 - 50S Ribosomal protein L36 protein, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 118 129
95% 67 118 188
90% 67 118 201
70% 71 144 180
50% 110 252 102
40% 110 252 128
30% 110 252 149
Entity #4: Chains: D - 50S Ribosomal protein L2 protein, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 58
95% 95 164 100
90% 95 164 108
70% 99 186 111
50% 138 297 70
40% 138 297 94
30% 138 297 115
Entity #5: Chains: E - 50S Ribosomal protein L3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 59
95% 95 164 102
90% 95 164 110
70% 95 164 131
50% 138 302 66
40% 138 302 88
30% 138 303 107
Entity #6: Chains: F - 50S Ribosomal protein L4 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 148 84
95% 95 164 101
90% 95 164 109
70% 95 164 130
50% 99 191 145
40% 99 191 173
30% 139 304 104
Entity #7: Chains: G - 50S Ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 149 81
95% 96 165 95
90% 96 165 103
70% 100 187 109
50% 140 302 64
40% 140 302 84
30% 140 302 105
Entity #8: Chains: H - 50S Ribosomal protein L6 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 61
95% 95 164 103
90% 95 164 111
70% 95 164 132
50% 99 196 136
40% 138 306 80
30% 228 432 55
Entity #9: Chains: I - 50S Ribosomal protein L9 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 110 151
95% 82 132 164
90% 82 132 176
70% 82 132 207
50% 83 137 236
40% 114 242 132
30% 114 242 152
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.