POP-OUT | CLOSE
 
Crystal structure of Thermus thermophilus 70S containing tRNAs and mRNA stop codon with pseudouridine
Sequence Clustering and Redundancy Reduction Results
4K0Q
Sequence Clusters for the Sequence Entities in PDB 4K0Q
Entity #1: Chains: A - 23S rRNA rna, length: 2915 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S Ribosomal protein L10 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: N - 50S Ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 159 71
95% 95 159 120
90% 95 159 128
70% 95 159 148
50% 134 280 85
40% 134 280 108
30% 134 281 130
Entity #12: Chains: O - 50S Ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 145 98
95% 95 164 106
90% 95 164 114
70% 99 186 112
50% 139 311 58
40% 139 312 77
30% 242 451 47
Entity #13: Chains: P - 50S Ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 63
95% 95 164 104
90% 95 164 112
70% 95 164 133
50% 95 166 171
40% 138 300 91
30% 241 443 53
Entity #14: Chains: Q - 50S Ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 149 83
95% 95 165 98
90% 95 165 106
70% 99 190 108
50% 138 302 67
40% 138 302 89
30% 138 302 111
Entity #15: Chains: R - 50S Ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 169 49
95% 96 169 86
90% 96 169 95
70% 96 169 115
50% 139 302 59
40% 139 304 78
30% 139 306 99
Entity #16: Chains: S - 50S Ribosomal protein L18 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 21 1645
95% 2 21 2154
90% 2 21 2187
70% 2 21 2196
50% 138 299 69
40% 138 299 93
30% 138 299 113
Entity #17: Chains: T - 50S Ribosomal protein L19 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 148 85
95% 95 164 105
90% 95 164 113
70% 95 164 134
50% 95 164 176
40% 95 164 209
30% 95 164 227
Entity #18: Chains: U - 50S Ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 34853
95% 95 164 107
90% 95 164 115
70% 95 164 135
50% 139 305 60
40% 139 306 79
30% 139 306 101
Entity #19: Chains: V - 50S Ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 65
95% 95 164 109
90% 95 164 117
70% 95 164 137
50% 99 192 144
40% 138 300 92
30% 138 300 112
Entity #2: Chains: B - 5S rRNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: W - 50S Ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 171 52
95% 97 172 87
90% 97 172 98
70% 97 172 119
50% 136 285 79
40% 136 285 103
30% 136 287 125
Entity #21: Chains: X - 50S Ribosomal protein L23 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 165 58
95% 95 165 99
90% 95 165 107
70% 95 165 129
50% 99 189 148
40% 138 306 81
30% 205 384 70
Entity #22: Chains: Y - 50S Ribosomal protein L24 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 64
95% 95 164 108
90% 95 164 116
70% 95 164 136
50% 95 166 172
40% 134 280 109
30% 134 282 128
Entity #23: Chains: Z - 50S Ribosomal protein L25 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 61
95% 96 165 94
90% 96 165 102
70% 96 165 127
50% 96 165 170
40% 96 165 204
30% 96 165 223
Entity #24: Chains: 0 - 50S Ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 149 78
95% 96 165 92
90% 96 165 101
70% 96 165 125
50% 139 303 62
40% 139 303 82
30% 139 303 105
Entity #25: Chains: 1 - 50S Ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 22 1558
95% 95 161 118
90% 95 161 126
70% 95 161 145
50% 95 161 183
40% 95 161 214
30% 95 161 233
Entity #26: Chains: 2 - 50S Ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 152 79
95% 95 155 124
90% 95 155 132
70% 95 155 154
50% 95 155 198
40% 134 275 115
30% 138 299 114
Entity #27: Chains: 3 - 50S Ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 169 54
95% 96 169 91
90% 96 169 100
70% 96 169 123
50% 96 169 167
40% 139 304 85
30% 139 304 108
Entity #28: Chains: 4 - 50S Ribosomal protein L31 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 4193
95% 3 11 4806
90% 3 11 4828
70% 3 11 4751
50% 3 11 4539
40% 3 11 4255
30% 3 11 3877
Entity #29: Chains: 5 - 50S Ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 148 86
95% 95 156 123
90% 95 156 131
70% 95 156 152
50% 99 188 150
40% 138 297 95
30% 138 297 116
Entity #3: Chains: C - 50S Ribosomal protein L1 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 31107
95% 2 2 23856
90% 2 2 22970
70% 2 2 20789
50% 2 2 17973
40% 3 6 3485
30% 3 6 3230
Entity #30: Chains: 6 - 50S Ribosomal protein L33 protein, length: 44 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 162 69
95% 95 162 115
90% 95 162 123
70% 95 162 143
50% 95 163 180
40% 137 295 97
30% 137 295 118
Entity #31: Chains: 7 - 50S Ribosomal protein L34 protein, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 67
95% 95 164 111
90% 95 164 119
70% 95 164 139
50% 95 164 177
40% 95 164 210
30% 95 164 228
Entity #32: Chains: 8 - 50S Ribosomal protein L35 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 66
95% 95 164 110
90% 95 164 118
70% 95 164 138
50% 99 190 146
40% 99 190 174
30% 99 190 194
Entity #33: Chains: 9 - 50S Ribosomal protein L36 protein, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 118 129
95% 67 118 188
90% 67 118 201
70% 71 144 180
50% 110 253 102
40% 110 253 128
30% 110 253 149
Entity #4: Chains: D - 50S Ribosomal protein L2 protein, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 59
95% 95 164 100
90% 95 164 108
70% 99 186 111
50% 138 298 70
40% 138 298 94
30% 138 298 115
Entity #5: Chains: E - 50S Ribosomal protein L3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 60
95% 95 164 102
90% 95 164 110
70% 95 164 131
50% 138 303 66
40% 138 303 87
30% 138 304 109
Entity #6: Chains: F - 50S Ribosomal protein L4 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 148 84
95% 95 164 101
90% 95 164 109
70% 95 164 130
50% 99 191 145
40% 99 191 173
30% 139 305 106
Entity #7: Chains: G - 50S Ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 149 81
95% 96 165 95
90% 96 165 103
70% 100 187 109
50% 140 303 64
40% 140 303 84
30% 140 303 107
Entity #8: Chains: H - 50S Ribosomal protein L6 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 164 62
95% 95 164 103
90% 95 164 111
70% 95 164 132
50% 99 196 136
40% 138 307 80
30% 241 446 51
Entity #9: Chains: I - 50S Ribosomal protein L9 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 110 157
95% 82 132 165
90% 82 132 176
70% 82 132 208
50% 83 137 239
40% 114 242 132
30% 114 242 152
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.