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Crystal structure of Thermus thermophilus 70S containing tRNAs and mRNA stop codon with pseudouridine
Sequence Clustering and Redundancy Reduction Results
4K0Q
Sequence Clusters for the Sequence Entities in PDB 4K0Q
Entity #1: Chains: A - 23S rRNA rna, length: 2915 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S Ribosomal protein L10 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: N - 50S Ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 146 76
95% 86 146 125
90% 86 146 135
70% 86 146 157
50% 125 265 90
40% 125 265 114
30% 125 266 139
Entity #12: Chains: O - 50S Ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 132 107
95% 86 151 114
90% 86 151 123
70% 90 173 115
50% 130 296 62
40% 130 297 81
30% 199 402 54
Entity #13: Chains: P - 50S Ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 151 69
95% 86 151 112
90% 86 151 121
70% 86 151 144
50% 86 153 190
40% 129 285 95
30% 198 394 61
Entity #14: Chains: Q - 50S Ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 136 101
95% 86 152 106
90% 86 152 114
70% 90 177 110
50% 129 287 73
40% 129 287 94
30% 129 287 116
Entity #15: Chains: R - 50S Ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 156 53
95% 87 156 91
90% 87 156 99
70% 87 156 122
50% 130 287 64
40% 130 289 82
30% 130 291 102
Entity #16: Chains: S - 50S Ribosomal protein L18 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 19 1800
95% 2 19 2319
90% 2 19 2356
70% 2 19 2383
50% 129 284 78
40% 129 284 99
30% 129 284 119
Entity #17: Chains: T - 50S Ribosomal protein L19 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 135 103
95% 86 151 113
90% 86 151 122
70% 86 151 145
50% 86 151 194
40% 86 151 229
30% 86 151 244
Entity #18: Chains: U - 50S Ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 34265
95% 86 151 115
90% 86 151 124
70% 86 151 146
50% 130 290 66
40% 130 291 84
30% 130 291 105
Entity #19: Chains: V - 50S Ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 151 71
95% 86 151 117
90% 86 151 126
70% 86 151 148
50% 90 179 148
40% 129 285 96
30% 129 285 118
Entity #2: Chains: B - 5S rRNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: W - 50S Ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 158 60
95% 88 159 96
90% 88 159 104
70% 88 159 127
50% 127 270 87
40% 127 270 108
30% 127 272 130
Entity #21: Chains: X - 50S Ribosomal protein L23 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 152 64
95% 86 152 107
90% 86 152 115
70% 86 152 139
50% 90 176 153
40% 129 291 87
30% 196 369 73
Entity #22: Chains: Y - 50S Ribosomal protein L24 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 151 70
95% 86 151 116
90% 86 151 125
70% 86 151 147
50% 86 153 191
40% 125 265 115
30% 125 267 137
Entity #23: Chains: Z - 50S Ribosomal protein L25 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 151 67
95% 87 152 104
90% 87 152 112
70% 87 152 137
50% 87 152 189
40% 87 152 227
30% 87 152 238
Entity #24: Chains: 0 - 50S Ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 136 95
95% 87 152 102
90% 87 152 110
70% 87 152 134
50% 130 288 67
40% 130 288 88
30% 130 288 108
Entity #25: Chains: 1 - 50S Ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 22 1459
95% 86 148 123
90% 86 148 131
70% 86 148 152
50% 86 148 198
40% 86 148 233
30% 86 148 250
Entity #26: Chains: 2 - 50S Ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 139 96
95% 86 142 130
90% 86 142 143
70% 86 142 167
50% 86 142 212
40% 125 260 118
30% 129 284 120
Entity #27: Chains: 3 - 50S Ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 158 58
95% 87 158 98
90% 87 158 106
70% 87 158 129
50% 87 158 175
40% 130 291 86
30% 130 291 107
Entity #28: Chains: 4 - 50S Ribosomal protein L31 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 11 4109
95% 3 11 4717
90% 3 11 4741
70% 3 11 4674
50% 3 11 4471
40% 3 11 4196
30% 3 11 3822
Entity #29: Chains: 5 - 50S Ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 135 104
95% 86 143 128
90% 86 143 140
70% 86 143 164
50% 90 175 160
40% 129 282 102
30% 129 282 124
Entity #3: Chains: C - 50S Ribosomal protein L1 protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 30577
95% 2 2 23460
90% 2 2 22592
70% 2 2 20432
50% 2 2 17680
40% 3 6 3427
30% 3 6 3179
Entity #30: Chains: 6 - 50S Ribosomal protein L33 protein, length: 44 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 149 75
95% 86 149 122
90% 86 149 130
70% 86 149 151
50% 86 150 197
40% 128 280 104
30% 128 280 126
Entity #31: Chains: 7 - 50S Ribosomal protein L34 protein, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 151 73
95% 86 151 119
90% 86 151 128
70% 86 151 150
50% 86 151 195
40% 86 151 230
30% 86 151 245
Entity #32: Chains: 8 - 50S Ribosomal protein L35 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 151 72
95% 86 151 118
90% 86 151 127
70% 86 151 149
50% 90 177 152
40% 90 177 182
30% 90 177 205
Entity #33: Chains: 9 - 50S Ribosomal protein L36 protein, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 105 183
95% 58 105 261
90% 58 105 271
70% 62 131 206
50% 101 238 109
40% 101 238 132
30% 101 238 152
Entity #4: Chains: D - 50S Ribosomal protein L2 protein, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 151 65
95% 86 151 108
90% 86 151 116
70% 90 173 114
50% 129 283 79
40% 129 283 100
30% 129 283 122
Entity #5: Chains: E - 50S Ribosomal protein L3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 151 66
95% 86 151 110
90% 86 151 118
70% 86 151 142
50% 129 288 72
40% 129 288 92
30% 129 289 114
Entity #6: Chains: F - 50S Ribosomal protein L4 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 135 102
95% 86 151 109
90% 86 151 117
70% 86 151 141
50% 90 178 150
40% 90 178 178
30% 130 290 109
Entity #7: Chains: G - 50S Ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 136 97
95% 87 152 105
90% 87 152 113
70% 91 174 113
50% 131 288 68
40% 131 288 89
30% 131 288 110
Entity #8: Chains: H - 50S Ribosomal protein L6 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 151 68
95% 86 151 111
90% 86 151 120
70% 86 151 143
50% 90 183 146
40% 129 292 85
30% 198 397 60
Entity #9: Chains: I - 50S Ribosomal protein L9 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 100 198
95% 74 122 176
90% 74 122 186
70% 74 122 220
50% 75 127 253
40% 106 231 137
30% 106 231 158
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.