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Crystal structure of Thermus thermophilus 70S containing tRNAs and mRNA stop codon with pseudouridine
Sequence Clustering and Redundancy Reduction Results
4K0P
Sequence Clusters for the Sequence Entities in PDB 4K0P
Entity #1: Chains: A - 16S rRNA rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 252 29
95% 152 254 48
90% 152 254 51
70% 152 254 63
50% 197 369 34
40% 197 369 48
30% 197 374 67
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 255 27
95% 152 255 44
90% 152 255 47
70% 152 255 59
50% 191 363 42
40% 195 403 39
30% 195 403 53
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 224 37
95% 152 262 36
90% 152 262 38
70% 191 375 24
50% 191 375 33
40% 191 375 47
30% 191 375 71
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 256 24
95% 152 256 42
90% 152 256 45
70% 152 256 57
50% 191 365 39
40% 191 365 53
30% 193 401 57
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 254 28
95% 152 254 49
90% 152 254 52
70% 152 254 64
50% 152 254 99
40% 152 254 124
30% 152 254 144
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 258 21
95% 156 263 35
90% 156 263 37
70% 156 263 48
50% 198 376 32
40% 198 376 45
30% 198 376 69
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 250 31
95% 152 255 46
90% 152 255 49
70% 152 255 61
50% 152 255 97
40% 152 255 122
30% 191 363 78
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 157 62
95% 151 249 51
90% 152 253 53
70% 152 253 65
50% 152 253 100
40% 152 253 126
30% 152 253 146
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 26 1130
95% 9 36 1041
90% 9 36 1064
70% 9 36 1093
50% 9 36 1157
40% 9 36 1190
30% 9 36 1178
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 35 742
95% 9 35 1070
90% 9 35 1092
70% 9 35 1130
50% 192 366 38
40% 192 366 52
30% 192 366 75
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 255 25
95% 152 256 39
90% 152 256 43
70% 152 256 55
50% 152 256 96
40% 191 363 55
30% 191 363 77
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 193 43
95% 152 254 47
90% 152 254 50
70% 152 254 62
50% 152 254 98
40% 152 254 123
30% 152 254 143
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 238 34
95% 152 238 55
90% 152 238 59
70% 152 238 71
50% 152 238 110
40% 152 238 133
30% 152 238 153
Entity #22: Chains: V - P-SITE tRNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - E-SITE tRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE tRNA rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: X - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 35 735
95% 9 35 1063
90% 9 35 1085
70% 9 35 1119
50% 33 79 449
40% 33 80 467
30% 33 80 487
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 248 32
95% 152 256 40
90% 152 256 44
70% 152 256 56
50% 191 363 40
40% 191 364 54
30% 191 364 76
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 255 26
95% 152 255 43
90% 152 255 46
70% 152 255 58
50% 192 367 37
40% 192 367 51
30% 192 369 72
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 260 18
95% 160 266 34
90% 160 266 36
70% 160 266 47
50% 160 266 88
40% 160 266 112
30% 186 313 95
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 259 20
95% 153 260 37
90% 153 260 39
70% 153 260 51
50% 179 308 57
40% 179 309 74
30% 179 309 97
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 255 23
95% 152 255 41
90% 153 259 40
70% 153 259 52
50% 194 369 36
40% 195 371 49
30% 198 408 50
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 113 134
95% 152 255 45
90% 152 255 48
70% 152 255 60
50% 191 363 41
40% 191 363 56
30% 193 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.