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Crystal structure of Thermus thermophilus 70S containing tRNAs and mRNA stop codon with pseudouridine
Sequence Clustering and Redundancy Reduction Results
4K0P
Sequence Clusters for the Sequence Entities in PDB 4K0P
Entity #1: Chains: A - 16S rRNA rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 265 27
95% 161 267 47
90% 161 267 49
70% 161 267 59
50% 206 382 34
40% 206 382 45
30% 206 387 65
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 268 25
95% 161 268 43
90% 161 268 45
70% 161 268 55
50% 200 376 41
40% 238 450 35
30% 238 450 45
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 237 35
95% 161 275 35
90% 161 275 37
70% 200 388 24
50% 200 388 33
40% 200 388 44
30% 200 388 68
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 269 22
95% 161 269 41
90% 161 269 43
70% 161 269 53
50% 200 378 38
40% 200 378 51
30% 236 448 49
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 267 26
95% 161 267 48
90% 161 267 50
70% 161 267 60
50% 161 267 93
40% 161 267 119
30% 161 267 140
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 271 20
95% 165 276 32
90% 165 276 34
70% 165 276 47
50% 207 389 32
40% 207 389 43
30% 207 389 67
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 263 28
95% 161 268 45
90% 161 268 47
70% 161 268 57
50% 161 268 91
40% 161 268 117
30% 200 376 76
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 170 53
95% 160 262 49
90% 161 266 51
70% 161 266 61
50% 161 266 94
40% 161 266 120
30% 161 266 142
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 28 1122
95% 9 38 1050
90% 9 38 1073
70% 9 38 1104
50% 9 38 1167
40% 9 38 1183
30% 9 38 1160
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 37 766
95% 9 37 1074
90% 9 37 1095
70% 9 37 1133
50% 201 379 37
40% 201 379 49
30% 201 379 72
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 268 23
95% 161 269 38
90% 161 269 41
70% 161 269 51
50% 161 269 90
40% 200 376 53
30% 200 376 75
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 206 42
95% 161 267 46
90% 161 267 48
70% 161 267 58
50% 161 267 92
40% 161 267 118
30% 161 267 139
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 249 33
95% 161 249 52
90% 161 249 55
70% 161 249 67
50% 161 249 104
40% 161 249 130
30% 161 249 150
Entity #22: Chains: V - P-SITE tRNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - E-SITE tRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE tRNA rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: X - mRNA rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 37 760
95% 9 37 1065
90% 9 37 1087
70% 9 37 1120
50% 33 81 439
40% 33 82 461
30% 33 82 477
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 261 29
95% 161 269 39
90% 161 269 42
70% 161 269 52
50% 200 376 39
40% 200 377 52
30% 200 377 74
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 268 24
95% 161 268 42
90% 161 268 44
70% 161 268 54
50% 201 380 36
40% 201 380 48
30% 201 382 71
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 273 18
95% 169 279 29
90% 169 279 30
70% 169 279 44
50% 169 279 83
40% 169 279 106
30% 195 326 94
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 272 19
95% 162 273 36
90% 162 273 38
70% 162 273 49
50% 188 321 56
40% 188 322 74
30% 188 322 96
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 268 21
95% 161 268 40
90% 162 272 39
70% 162 272 50
50% 203 382 35
40% 204 384 46
30% 241 455 44
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 113 139
95% 161 268 44
90% 161 268 46
70% 161 268 56
50% 200 376 40
40% 200 376 54
30% 236 446 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.