POP-OUT | CLOSE
 
Crystal structure of Thermus thermophilus 70S containing tRNAs and mRNA stop codon with pseudouridine
Sequence Clustering and Redundancy Reduction Results
4K0M
Sequence Clusters for the Sequence Entities in PDB 4K0M
Entity #1: Chains: A - 23S ribosomal RNA rna, length: 2915 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S ribosomal protein L10 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 159 71
95% 94 159 120
90% 94 159 128
70% 94 159 148
50% 133 278 85
40% 133 278 109
30% 133 279 131
Entity #12: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 145 88
95% 94 164 106
90% 94 164 114
70% 98 186 112
50% 138 309 58
40% 138 310 76
30% 207 415 54
Entity #13: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 62
95% 94 164 104
90% 94 164 112
70% 94 164 133
50% 94 166 171
40% 137 298 91
30% 206 407 61
Entity #14: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 149 83
95% 94 165 98
90% 94 165 106
70% 98 190 108
50% 137 300 68
40% 137 300 90
30% 137 300 110
Entity #15: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 169 49
95% 95 169 86
90% 95 169 95
70% 95 169 115
50% 138 300 59
40% 138 302 77
30% 138 304 99
Entity #16: Chains: S - 50S ribosomal protein L18 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 21 1565
95% 1 21 2072
90% 1 21 2103
70% 1 21 2132
50% 137 297 69
40% 137 297 93
30% 137 297 113
Entity #17: Chains: T - 50S ribosomal protein L19 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 148 85
95% 94 164 105
90% 94 164 113
70% 94 164 134
50% 94 164 176
40% 94 164 208
30% 94 164 227
Entity #18: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 34703
95% 94 164 107
90% 94 164 115
70% 94 164 135
50% 138 303 61
40% 138 304 79
30% 138 304 101
Entity #19: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 64
95% 94 164 109
90% 94 164 117
70% 94 164 137
50% 98 192 143
40% 137 298 92
30% 137 298 112
Entity #2: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 171 52
95% 96 172 87
90% 96 172 98
70% 96 172 119
50% 135 283 81
40% 135 283 105
30% 135 285 125
Entity #21: Chains: X - 50S ribosomal protein L23 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 165 57
95% 94 165 99
90% 94 165 107
70% 94 165 129
50% 98 189 148
40% 137 304 82
30% 204 382 71
Entity #22: Chains: Y - 50S ribosomal protein L24 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 63
95% 94 164 108
90% 94 164 116
70% 94 164 136
50% 94 166 172
40% 133 278 110
30% 133 280 130
Entity #23: Chains: Z - 50S ribosomal protein L25 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 60
95% 95 165 94
90% 95 165 102
70% 95 165 127
50% 95 165 170
40% 95 165 203
30% 95 165 223
Entity #24: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 149 78
95% 95 165 92
90% 95 165 101
70% 95 165 125
50% 138 301 63
40% 138 301 83
30% 138 301 103
Entity #25: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 22 1478
95% 94 161 118
90% 94 161 126
70% 94 161 145
50% 94 161 182
40% 94 161 214
30% 94 161 232
Entity #26: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 152 79
95% 94 155 124
90% 94 155 132
70% 94 155 154
50% 94 155 197
40% 133 273 115
30% 137 297 114
Entity #27: Chains: 3 - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 169 54
95% 95 169 91
90% 95 169 100
70% 95 169 122
50% 95 169 167
40% 138 302 86
30% 138 302 106
Entity #28: Chains: 4 - 50S ribosomal protein L31 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4159
95% 2 11 4772
90% 2 11 4793
70% 2 11 4719
50% 2 11 4518
40% 2 11 4236
30% 2 11 3859
Entity #29: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 148 86
95% 94 156 123
90% 94 156 131
70% 94 156 152
50% 98 188 150
40% 137 295 96
30% 137 295 117
Entity #3: Chains: C - 50S ribosomal protein L1 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30968
95% 1 2 23764
90% 1 2 22884
70% 1 2 20715
50% 1 2 17912
40% 2 6 3466
30% 2 6 3212
Entity #30: Chains: 6 - 50S ribosomal protein L33 protein, length: 44 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 162 69
95% 94 162 115
90% 94 162 123
70% 94 162 143
50% 94 163 180
40% 136 293 98
30% 136 293 119
Entity #31: Chains: 7 - 50S ribosomal protein L34 protein, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 66
95% 94 164 111
90% 94 164 119
70% 94 164 139
50% 94 164 177
40% 94 164 209
30% 94 164 228
Entity #32: Chains: 8 - 50S ribosomal protein L35 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 65
95% 94 164 110
90% 94 164 118
70% 94 164 138
50% 98 190 146
40% 98 190 174
30% 98 190 194
Entity #33: Chains: 9 - 50S ribosomal protein L36 protein, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 118 129
95% 66 118 188
90% 66 118 200
70% 70 144 180
50% 109 251 102
40% 109 251 128
30% 109 251 149
Entity #4: Chains: D - 50S ribosomal protein L2 protein, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 58
95% 94 164 100
90% 94 164 108
70% 98 186 111
50% 137 296 70
40% 137 296 94
30% 137 296 115
Entity #5: Chains: E - 50S ribosomal protein L3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 59
95% 94 164 102
90% 94 164 110
70% 94 164 131
50% 137 301 67
40% 137 301 89
30% 137 302 108
Entity #6: Chains: F - 50S ribosomal protein L4 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 148 84
95% 94 164 101
90% 94 164 109
70% 94 164 130
50% 98 191 145
40% 98 191 173
30% 138 303 104
Entity #7: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 149 81
95% 95 165 95
90% 95 165 103
70% 99 187 109
50% 139 301 65
40% 139 301 85
30% 139 301 105
Entity #8: Chains: H - 50S ribosomal protein L6 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 61
95% 94 164 103
90% 94 164 111
70% 94 164 132
50% 98 196 136
40% 137 305 80
30% 206 410 58
Entity #9: Chains: I - 50S ribosomal protein L9 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 110 144
95% 81 132 164
90% 81 132 176
70% 81 132 207
50% 82 137 235
40% 113 241 132
30% 113 241 152
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.