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Crystal structure of Thermus thermophilus 70S containing tRNAs and mRNA stop codon with pseudouridine
Sequence Clustering and Redundancy Reduction Results
4K0M
Sequence Clusters for the Sequence Entities in PDB 4K0M
Entity #1: Chains: A - 23S ribosomal RNA rna, length: 2915 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S ribosomal protein L10 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 159 72
95% 94 159 120
90% 94 159 128
70% 94 159 148
50% 135 283 85
40% 135 283 106
30% 135 284 129
Entity #12: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 145 98
95% 94 164 106
90% 94 164 114
70% 98 186 113
50% 140 314 57
40% 140 315 76
30% 243 454 46
Entity #13: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 63
95% 94 164 104
90% 94 164 112
70% 94 164 133
50% 94 166 173
40% 139 303 89
30% 242 446 54
Entity #14: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 149 83
95% 94 165 98
90% 94 165 106
70% 98 190 108
50% 139 305 67
40% 139 305 87
30% 139 305 111
Entity #15: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 169 50
95% 95 169 86
90% 95 169 95
70% 95 169 117
50% 140 305 59
40% 140 307 77
30% 140 309 98
Entity #16: Chains: S - 50S ribosomal protein L18 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 21 1657
95% 1 21 2169
90% 1 21 2202
70% 1 21 2211
50% 139 302 69
40% 139 302 92
30% 139 302 113
Entity #17: Chains: T - 50S ribosomal protein L19 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 148 85
95% 94 164 105
90% 94 164 113
70% 94 164 134
50% 94 164 177
40% 94 164 209
30% 94 164 227
Entity #18: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 35100
95% 94 164 107
90% 94 164 115
70% 94 164 135
50% 140 308 61
40% 140 309 79
30% 140 309 102
Entity #19: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 65
95% 94 164 109
90% 94 164 117
70% 94 164 137
50% 98 192 145
40% 139 303 90
30% 139 303 112
Entity #2: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 171 53
95% 96 172 88
90% 96 172 98
70% 96 172 119
50% 137 288 79
40% 137 288 104
30% 137 290 121
Entity #21: Chains: X - 50S ribosomal protein L23 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 165 58
95% 94 165 99
90% 94 165 107
70% 94 165 129
50% 98 189 149
40% 139 309 82
30% 206 387 69
Entity #22: Chains: Y - 50S ribosomal protein L24 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 64
95% 94 164 108
90% 94 164 116
70% 94 164 136
50% 94 166 174
40% 135 283 107
30% 135 285 128
Entity #23: Chains: Z - 50S ribosomal protein L25 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 61
95% 95 165 94
90% 95 165 102
70% 95 165 127
50% 95 165 172
40% 95 165 204
30% 95 165 223
Entity #24: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 149 78
95% 95 165 92
90% 95 165 101
70% 95 165 125
50% 140 306 63
40% 140 306 83
30% 140 306 104
Entity #25: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 22 1569
95% 94 161 118
90% 94 161 126
70% 94 161 145
50% 94 161 185
40% 94 161 215
30% 94 161 234
Entity #26: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 152 79
95% 94 155 124
90% 94 155 132
70% 94 155 154
50% 94 155 200
40% 135 278 111
30% 139 302 114
Entity #27: Chains: 3 - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 171 52
95% 95 171 90
90% 95 171 99
70% 95 171 120
50% 95 171 168
40% 140 309 81
30% 140 309 103
Entity #28: Chains: 4 - 50S ribosomal protein L31 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4225
95% 2 11 4835
90% 2 11 4856
70% 2 11 4783
50% 2 11 4564
40% 2 11 4278
30% 2 11 3901
Entity #29: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 148 86
95% 94 156 123
90% 94 156 131
70% 94 156 152
50% 98 188 151
40% 139 300 95
30% 139 300 116
Entity #3: Chains: C - 50S ribosomal protein L1 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 31317
95% 1 2 24023
90% 1 2 23125
70% 1 2 20915
50% 1 2 18081
40% 2 6 3504
30% 2 6 3247
Entity #30: Chains: 6 - 50S ribosomal protein L33 protein, length: 44 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 162 69
95% 94 162 115
90% 94 162 123
70% 94 162 143
50% 94 163 181
40% 138 297 97
30% 138 297 117
Entity #31: Chains: 7 - 50S ribosomal protein L34 protein, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 67
95% 94 164 111
90% 94 164 119
70% 94 164 139
50% 94 164 178
40% 94 164 210
30% 94 164 228
Entity #32: Chains: 8 - 50S ribosomal protein L35 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 66
95% 94 164 110
90% 94 164 118
70% 94 164 138
50% 98 190 147
40% 98 190 174
30% 98 190 195
Entity #33: Chains: 9 - 50S ribosomal protein L36 protein, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 118 133
95% 66 118 193
90% 66 118 206
70% 70 144 183
50% 111 256 102
40% 111 256 127
30% 111 256 145
Entity #4: Chains: D - 50S ribosomal protein L2 protein, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 59
95% 94 164 100
90% 94 164 108
70% 98 186 112
50% 139 301 71
40% 139 301 94
30% 139 301 115
Entity #5: Chains: E - 50S ribosomal protein L3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 60
95% 94 164 102
90% 94 164 110
70% 94 164 131
50% 139 306 66
40% 139 306 86
30% 139 307 110
Entity #6: Chains: F - 50S ribosomal protein L4 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 148 84
95% 94 164 101
90% 94 164 109
70% 94 164 130
50% 98 191 146
40% 98 191 173
30% 140 308 106
Entity #7: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 149 81
95% 95 165 95
90% 95 165 103
70% 99 187 109
50% 141 306 64
40% 141 306 84
30% 141 306 107
Entity #8: Chains: H - 50S ribosomal protein L6 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 164 62
95% 94 164 103
90% 94 164 111
70% 94 164 132
50% 98 196 140
40% 139 310 80
30% 242 449 51
Entity #9: Chains: I - 50S ribosomal protein L9 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 110 164
95% 81 132 165
90% 81 132 176
70% 81 132 208
50% 82 137 240
40% 115 245 133
30% 115 245 153
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.