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Crystal structure of Thermus thermophilus 70S containing tRNAs and mRNA stop codon with pseudouridine
Sequence Clustering and Redundancy Reduction Results
4K0M
Sequence Clusters for the Sequence Entities in PDB 4K0M
Entity #1: Chains: A - 23S ribosomal RNA rna, length: 2915 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 50S ribosomal protein L10 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #11: Chains: N - 50S ribosomal protein L13 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 146 77
95% 85 146 125
90% 85 146 135
70% 85 146 158
50% 124 265 90
40% 124 265 114
30% 124 266 139
Entity #12: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 132 108
95% 85 151 114
90% 85 151 123
70% 89 173 115
50% 129 296 62
40% 129 297 81
30% 198 402 56
Entity #13: Chains: P - 50S ribosomal protein L15 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 151 69
95% 85 151 112
90% 85 151 121
70% 85 151 146
50% 85 153 192
40% 128 285 95
30% 197 394 62
Entity #14: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 136 102
95% 85 152 106
90% 85 152 114
70% 89 177 111
50% 128 287 73
40% 128 287 94
30% 128 287 116
Entity #15: Chains: R - 50S ribosomal protein L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 156 53
95% 86 156 91
90% 86 156 99
70% 86 156 122
50% 129 287 64
40% 129 289 82
30% 129 291 102
Entity #16: Chains: S - 50S ribosomal protein L18 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 19 1806
95% 1 19 2329
90% 1 19 2367
70% 1 19 2394
50% 128 284 78
40% 128 284 99
30% 128 284 119
Entity #17: Chains: T - 50S ribosomal protein L19 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 135 104
95% 85 151 113
90% 85 151 122
70% 85 151 147
50% 85 151 196
40% 85 151 231
30% 85 151 245
Entity #18: Chains: U - 50S ribosomal protein L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 34435
95% 85 151 115
90% 85 151 124
70% 85 151 148
50% 129 290 66
40% 129 291 84
30% 129 291 106
Entity #19: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 151 71
95% 85 151 117
90% 85 151 126
70% 85 151 150
50% 89 179 148
40% 128 285 96
30% 128 285 118
Entity #2: Chains: B - 5S ribosomal RNA rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 158 60
95% 87 159 96
90% 87 159 104
70% 87 159 127
50% 126 270 87
40% 126 270 108
30% 126 272 130
Entity #21: Chains: X - 50S ribosomal protein L23 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 152 64
95% 85 152 107
90% 85 152 115
70% 85 152 141
50% 89 176 154
40% 128 291 87
30% 195 369 73
Entity #22: Chains: Y - 50S ribosomal protein L24 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 151 70
95% 85 151 116
90% 85 151 125
70% 85 151 149
50% 85 153 193
40% 124 265 115
30% 124 267 137
Entity #23: Chains: Z - 50S ribosomal protein L25 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 151 67
95% 86 152 104
90% 86 152 112
70% 86 152 139
50% 86 152 191
40% 86 152 228
30% 86 152 240
Entity #24: Chains: 0 - 50S ribosomal protein L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 136 96
95% 86 152 102
90% 86 152 110
70% 86 152 135
50% 129 288 67
40% 129 288 88
30% 129 288 108
Entity #25: Chains: 1 - 50S ribosomal protein L28 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 22 1464
95% 85 148 123
90% 85 148 132
70% 85 148 155
50% 85 148 202
40% 85 148 236
30% 85 148 252
Entity #26: Chains: 2 - 50S ribosomal protein L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 139 97
95% 85 142 131
90% 85 142 144
70% 85 142 168
50% 85 142 212
40% 124 260 119
30% 128 284 120
Entity #27: Chains: 3 - 50S ribosomal protein L30 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 158 58
95% 86 158 98
90% 86 158 106
70% 86 158 129
50% 86 158 176
40% 129 291 86
30% 129 291 107
Entity #28: Chains: 4 - 50S ribosomal protein L31 protein, length: 30 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 11 4131
95% 2 11 4741
90% 2 11 4764
70% 2 11 4694
50% 2 11 4489
40% 2 11 4211
30% 2 11 3837
Entity #29: Chains: 5 - 50S ribosomal protein L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 135 105
95% 85 143 128
90% 85 143 140
70% 85 143 165
50% 89 175 161
40% 128 282 102
30% 128 282 124
Entity #3: Chains: C - 50S ribosomal protein L1 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 30727
95% 1 2 23576
90% 1 2 22704
70% 1 2 20535
50% 1 2 17764
40% 2 6 3444
30% 2 6 3194
Entity #30: Chains: 6 - 50S ribosomal protein L33 protein, length: 44 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 149 76
95% 85 149 122
90% 85 149 131
70% 85 149 153
50% 85 150 199
40% 127 280 104
30% 127 280 126
Entity #31: Chains: 7 - 50S ribosomal protein L34 protein, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 151 73
95% 85 151 119
90% 85 151 128
70% 85 151 152
50% 85 151 197
40% 85 151 232
30% 85 151 246
Entity #32: Chains: 8 - 50S ribosomal protein L35 protein, length: 63 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 151 72
95% 85 151 118
90% 85 151 127
70% 85 151 151
50% 89 177 152
40% 89 177 182
30% 89 177 205
Entity #33: Chains: 9 - 50S ribosomal protein L36 protein, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 105 184
95% 57 105 262
90% 57 105 273
70% 61 131 206
50% 100 238 109
40% 100 238 132
30% 100 238 152
Entity #4: Chains: D - 50S ribosomal protein L2 protein, length: 271 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 151 65
95% 85 151 108
90% 85 151 116
70% 89 173 114
50% 128 283 79
40% 128 283 100
30% 128 283 122
Entity #5: Chains: E - 50S ribosomal protein L3 protein, length: 204 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 151 66
95% 85 151 110
90% 85 151 118
70% 85 151 144
50% 128 288 72
40% 128 288 93
30% 128 289 114
Entity #6: Chains: F - 50S ribosomal protein L4 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 135 103
95% 85 151 109
90% 85 151 117
70% 85 151 143
50% 89 178 150
40% 89 178 178
30% 129 290 109
Entity #7: Chains: G - 50S ribosomal protein L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 136 98
95% 86 152 105
90% 86 152 113
70% 90 174 113
50% 130 288 68
40% 130 288 89
30% 130 288 110
Entity #8: Chains: H - 50S ribosomal protein L6 protein, length: 159 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 151 68
95% 85 151 111
90% 85 151 120
70% 85 151 145
50% 89 183 147
40% 128 292 85
30% 197 397 61
Entity #9: Chains: I - 50S ribosomal protein L9 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 100 199
95% 73 122 176
90% 73 122 186
70% 73 122 221
50% 74 127 255
40% 105 231 137
30% 105 231 158
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.