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Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0L
Cluster # 135 Members. Sequence cutoff: 100% Cluster size: 113 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 2VQE 9 I 30S RIBOSOMAL PROTEIN S9 300852  
2 4JYA 9 I 30S ribosomal protein S9 300852  
3 4KHP 9 I 30S Ribosomal protein S9 300852  
4 4JUW 22 I 30S ribosomal protein S9 300852  
5 2UXC 9 I RIBOSOMAL PROTEIN S9 300852  
6 4B3M 9 I 30S RIBOSOMAL PROTEIN S9 300852  
7 4B3T 9 I 30S RIBOSOMAL PROTEIN S9 300852  
8 2VQF 9 I 30S RIBOSOMAL PROTEIN S9 300852  
9 4B3R 9 I 30S RIBOSOMAL PROTEIN S9 300852  
10 4JV5 9 I 30S ribosomal protein S9 300852  
11 1J5E 9 I 30S RIBOSOMAL PROTEIN S9 274  
12 4GKK 9 I 30S ribosomal protein S9 300852  
13 4GKJ 9 I 30S ribosomal protein S9 300852  
14 1FJG 10 I 30S RIBOSOMAL PROTEIN S9 274  
15 3T1Y 9 I 30S ribosomal protein S9 262724  
16 1XMQ 11 I 30S Ribosomal Protein S9 274  
17 4B3S 9 I 30S RIBOSOMAL PROTEIN S9 300852  
18 1N32 11 I 30S RIBOSOMAL PROTEIN S9 274  
19 1I94 9 I 30S RIBOSOMAL PROTEIN S9 274  
20 4K0K 9 I 30S ribosomal protein S9 300852  
21 2X9R 9 I 30S RIBOSOMAL PROTEIN S9 300852  
22 2X9T 9 I 30S RIBOSOMAL PROTEIN S9 300852  
23 3OHY 9 I 30S ribosomal protein S9 300852  
24 3OI0 9 I 30S ribosomal protein S9 300852  
25 3OTO 9 I 30S RIBOSOMAL PROTEIN S9 300852  
26 4ABR 10 I 30S RIBOSOMAL PROTEIN S9 300852  
27 1HR0 10 I 30S RIBOSOMAL PROTEIN S9 274  
28 4AQY 9 I 30S RIBOSOMAL PROTEIN S9 274  
29 2XQD 9 I 30S RIBOSOMAL PROTEIN S9 300852  
30 3OHC 9 I 30S ribosomal protein S9 300852  
31 3OHD 9 I 30S ribosomal protein S9 300852  
32 1IBL 12 I 30S RIBOSOMAL PROTEIN S9 274  
33 3OGE 9 I 30S ribosomal protein S9 300852  
34 3OGY 9 I 30S ribosomal protein S9 300852  
35 1XNR 11 I 16S Ribosomal protein S9 274  
36 2J00 9 I 30S RIBOSOMAL PROTEIN S9 300852  
37 2J02 9 I 30S RIBOSOMAL PROTEIN S9 300852  
38 1HNZ 10 I 30S RIBOSOMAL PROTEIN S9 274  
39 1XNQ 11 I Ribosomal protein S9 274  
40 3UXS 9 I 30S ribosomal protein S9 300852  
41 3UXT 9 I 30S ribosomal protein S9 300852  
42 2XG1 9 I 30S RIBOSOMAL PROTEIN S9 300852  
43 2XFZ 9 I 30S RIBOSOMAL PROTEIN S9 300852  
44 2WDG 9 I 30S RIBOSOMAL PROTEIN S9 300852  
45 2WDH 9 I 30S RIBOSOMAL PROTEIN S9 300852  
46 2WH1 9 I 30S RIBOSOMAL PROTEIN S9 300852  
47 2WH3 9 I 30S RIBOSOMAL PROTEIN S9 300852  
48 2WDK 9 I 30S RIBOSOMAL PROTEIN S9 300852  
49 2WDM 9 I 30S RIBOSOMAL PROTEIN S9 300852  
50 3OI2 9 I 30S ribosomal protein S9 300852  
51 3OI4 9 I 30S ribosomal protein S9 300852  
52 4K0L 9 I 30S Ribosomal protein S9 300852  
53 4K0P 9 I 30S Ribosomal protein S9 300852  
54 1XMO 11 I 30S ribosomal protein S9 274  
55 3T1H 9 I 30S ribosomal protein S9 262724  
56 2UXD 9 I RIBOSOMAL PROTEIN S9 300852  
57 1N33 11 I 30S RIBOSOMAL PROTEIN S9 274  
58 1IBK 10 I 30S RIBOSOMAL PROTEIN S9 274  
59 1HNW 10 I 30S RIBOSOMAL PROTEIN S9 274  
60 1IBM 12 I 30S RIBOSOMAL PROTEIN S9 274  
61 3PYS 9 I 30S ribosomal protein S9 262724  
62 3PYU 9 I 30S ribosomal protein S9 262724  
63 1HNX 10 I 30S RIBOSOMAL PROTEIN S9 274  
64 4L6K 9 I 30S ribosomal protein S9 262724  
65 4L6M 9 I 30S ribosomal protein S9 262724  
66 4KFH 12 I 30S ribosomal protein S9 262724  
67 4KFK 12 I 30S ribosomal protein S9 262724  
68 3F1E 11 I 30S ribosomal protein S9 274  
69 3F1G 11 I 30S ribosomal protein S9 274  
70 3PYN 9 I 30S ribosomal protein S9 262724  
71 3PYQ 9 I 30S ribosomal protein S9 262724  
72 2E5L 10 I 30S ribosomal protein S9 274  
73 2HHH 9 I 30S ribosomal protein S9 300852  
74 2UXB 9 I RIBOSOMAL PROTEIN S9 300852  
75 1I96 9 I 30S RIBOSOMAL PROTEIN S9 274  
76 4KCY 8 I 30S ribosomal protein S9 262724  
77 1N34 10 I 30S RIBOSOMAL PROTEIN S9 274  
78 4KD0 8 I 30S ribosomal protein S9 262724  
79 2V46 9 I 30S RIBOSOMAL PROTEIN S9 300852  
80 2V48 9 I 30S RIBOSOMAL PROTEIN S9 300852  
81 3D5A 11 I 30S ribosomal protein S9 262724  
82 3D5C 11 I 30S ribosomal protein S9 262724  
83 4KVB 9 I 30S ribosomal protein S9 262724  
84 3MR8 9 I 30S ribosomal protein S9 262724  
85 3MS0 9 I 30S ribosomal protein S9 262724  
86 1N36 9 I 30S RIBOSOMAL PROTEIN S9 274  
87 2ZM6 9 I 30S ribosomal protein S9 274  
88 2F4V 10 I 30S ribosomal protein S9 274  
89 1I97 9 I 30S RIBOSOMAL PROTEIN S9 274  
90 4KBT 8 I 30S ribosomal protein S9 262724  
91 4KBV 8 I 30S ribosomal protein S9 262724  
92 1I95 9 I 30S RIBOSOMAL PROTEIN S9 274  
93 3ZVO 9 I 30S RIBOSOMAL PROTEIN S9 300852  
94 2QNH 12 j 30S ribosomal protein S9 262724  
95 2OW8 12 j 30S ribosomal protein S9 262724  
96 1YL4 11 L 30S ribosomal protein S9 300852  
97 2B64 12 I 30S ribosomal protein S9 300852  
98 2B9M 12 I 30S ribosomal protein S9 300852  
99 2B9O 12 I 30S ribosomal protein S9 300852  
100 1PNS 11 I 30S ribosomal protein S9 562  
101 1PNX 9 I 30S ribosomal protein S9 562  
102 1VOQ 9 I 30S ribosomal protein S9 562  
103 1VOS 9 I 30S ribosomal protein S9 562  
104 1VOV 9 I 30S ribosomal protein S9 562  
105 1VOX 9 I 30S ribosomal protein S9 562  
106 1VOZ 9 I 30S ribosomal protein S9 562  
107 3FIC 16 I 30S ribosomal protein S9 274  
108 2R1G 8 G 30S ribosomal protein S9 262724  
109 1ML5 14 L 30S RIBOSOMAL PROTEIN S9 562  
110 1JGO 12 L 30S RIBOSOMAL PROTEIN S9 274  
111 1JGP 12 L 30S RIBOSOMAL PROTEIN S9 274  
112 1JGQ 12 L 30S RIBOSOMAL PROTEIN S9 274  
113 1GIX 12 L 30S RIBOSOMAL PROTEIN S9 274  
 
Sequence Clusters for the Sequence Entities in PDB 4K0L
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 265 27
95% 160 267 47
90% 160 267 49
70% 160 267 59
50% 205 382 34
40% 205 382 45
30% 205 387 65
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 25
95% 160 268 43
90% 160 268 45
70% 160 268 55
50% 199 376 41
40% 203 416 40
30% 203 416 52
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 237 35
95% 160 275 35
90% 160 275 37
70% 199 388 24
50% 199 388 33
40% 199 388 44
30% 199 388 68
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 269 22
95% 160 269 41
90% 160 269 43
70% 160 269 53
50% 199 378 38
40% 199 378 51
30% 201 414 55
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 267 26
95% 160 267 48
90% 160 267 50
70% 160 267 60
50% 160 267 93
40% 160 267 119
30% 160 267 140
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 271 20
95% 164 276 32
90% 164 276 34
70% 164 276 47
50% 206 389 32
40% 206 389 43
30% 206 389 67
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 263 28
95% 160 268 45
90% 160 268 47
70% 160 268 57
50% 160 268 91
40% 160 268 117
30% 199 376 76
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 170 53
95% 159 262 49
90% 160 266 51
70% 160 266 61
50% 160 266 94
40% 160 266 120
30% 160 266 142
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 28 1046
95% 8 38 975
90% 8 38 998
70% 8 38 1029
50% 8 38 1094
40% 8 38 1118
30% 8 38 1098
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 37 697
95% 8 37 1000
90% 8 37 1022
70% 8 37 1059
50% 200 379 37
40% 200 379 49
30% 200 379 72
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 23
95% 160 269 38
90% 160 269 41
70% 160 269 51
50% 160 269 90
40% 199 376 53
30% 199 376 75
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 206 42
95% 160 267 46
90% 160 267 48
70% 160 267 58
50% 160 267 92
40% 160 267 118
30% 160 267 139
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 249 33
95% 160 249 52
90% 160 249 55
70% 160 249 66
50% 160 249 103
40% 160 249 130
30% 160 249 150
Entity #22: Chains: V - P-SITE tRNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - E-SITE tRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE tRNA rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: X - mRNA rna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 37 691
95% 8 37 991
90% 8 37 1013
70% 8 37 1045
50% 32 81 437
40% 32 82 456
30% 32 82 473
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 261 29
95% 160 269 39
90% 160 269 42
70% 160 269 52
50% 199 376 39
40% 199 377 52
30% 199 377 74
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 24
95% 160 268 42
90% 160 268 44
70% 160 268 54
50% 200 380 36
40% 200 380 48
30% 200 382 70
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 273 18
95% 168 279 29
90% 168 279 30
70% 168 279 44
50% 168 279 82
40% 168 279 106
30% 194 326 94
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 272 19
95% 161 273 36
90% 161 273 38
70% 161 273 49
50% 187 321 56
40% 187 322 73
30% 187 322 96
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 21
95% 160 268 40
90% 161 272 39
70% 161 272 50
50% 202 382 35
40% 203 384 46
30% 206 421 51
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 113 135
95% 160 268 44
90% 160 268 46
70% 160 268 56
50% 199 376 40
40% 199 376 54
30% 201 412 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.