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Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0L
Cluster # 1095 Members. Sequence cutoff: 70% Cluster size: 37 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4JYA 3 C 30S ribosomal protein S3 300852  
2 4KHP 3 C 30S Ribosomal protein S3 300852  
3 4JUW 16 C 30S ribosomal protein S3 300852  
4 4JV5 3 C 30S ribosomal protein S3 300852  
5 4GKK 3 C 30S ribosomal protein S3 300852  
6 4GKJ 3 C 30S ribosomal protein S3 300852  
7 4K0K 3 C 30S ribosomal protein S3 300852  
8 4K0L 3 C 30S Ribosomal protein S3 300852  
9 4K0P 3 C 30S Ribosomal protein S3 300852  
10 3PYS 3 C 30S ribosomal protein S3 262724  
11 3PYU 3 C 30S ribosomal protein S3 262724  
12 4L6K 3 C 30S ribosomal protein S3 262724  
13 4L6M 3 C 30S ribosomal protein S3 262724  
14 4KFH 6 C 30S ribosomal protein S3 262724  
15 4KFK 6 C 30S ribosomal protein S3 262724  
16 3PYN 3 C 30S ribosomal protein S3 262724  
17 3PYQ 3 C 30S ribosomal protein S3 262724  
18 4KCY 2 C 30S ribosomal protein S3 262724  
19 4KD0 2 C 30S ribosomal protein S3 262724  
20 3MR8 3 C 30S ribosomal protein S3 262724  
21 3MS0 3 C 30S ribosomal protein S3 262724  
22 4KD8 2 C 30S ribosomal protein S3 262724  
23 4KDA 2 C 30S ribosomal protein S3 262724  
24 4KBT 2 C 30S ribosomal protein S3 262724  
25 4KBV 2 C 30S ribosomal protein S3 262724  
26 4KDG 2 C 30S ribosomal protein S3 262724  
27 4KDJ 2 C 30S ribosomal protein S3 262724  
28 4QS0 2 C 30S ribosomal protein S3 262724  
29 4QS2 2 C 30S ribosomal protein S3 262724  
30 1PNS 5 C 30S ribosomal protein S3 562  
31 1PNX 3 C 30S ribosomal protein S3 562  
32 1VOQ 3 C 30S ribosomal protein S3 562  
33 1VOS 3 C 30S ribosomal protein S3 562  
34 1VOV 3 C 30S ribosomal protein S3 562  
35 1VOX 3 C 30S ribosomal protein S3 562  
36 1VOZ 3 C 30S ribosomal protein S3 562  
37 3FIC 14 C 30S ribosomal protein S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4K0L
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 265 27
95% 160 267 47
90% 160 267 49
70% 160 267 59
50% 205 382 34
40% 205 382 45
30% 205 387 65
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 25
95% 160 268 43
90% 160 268 45
70% 160 268 55
50% 199 376 41
40% 223 436 38
30% 223 436 51
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 237 35
95% 160 275 35
90% 160 275 37
70% 199 388 24
50% 199 388 33
40% 199 388 44
30% 199 388 68
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 269 22
95% 160 269 41
90% 160 269 43
70% 160 269 53
50% 199 378 38
40% 199 378 51
30% 221 434 54
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 267 26
95% 160 267 48
90% 160 267 50
70% 160 267 60
50% 160 267 93
40% 160 267 119
30% 160 267 140
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 271 20
95% 164 276 32
90% 164 276 34
70% 164 276 47
50% 206 389 32
40% 206 389 43
30% 206 389 67
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 263 28
95% 160 268 45
90% 160 268 47
70% 160 268 57
50% 160 268 91
40% 160 268 117
30% 199 376 76
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 170 53
95% 159 262 49
90% 160 266 51
70% 160 266 61
50% 160 266 94
40% 160 266 120
30% 160 266 142
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 28 1114
95% 8 38 1012
90% 8 38 1035
70% 8 38 1078
50% 8 38 1154
40% 8 38 1174
30% 8 38 1150
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 37 734
95% 8 37 1040
90% 8 37 1061
70% 8 37 1109
50% 200 379 37
40% 200 379 49
30% 200 379 72
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 23
95% 160 269 38
90% 160 269 41
70% 160 269 51
50% 160 269 90
40% 199 376 53
30% 199 376 75
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 206 42
95% 160 267 46
90% 160 267 48
70% 160 267 58
50% 160 267 92
40% 160 267 118
30% 160 267 139
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 249 33
95% 160 249 52
90% 160 249 55
70% 160 249 66
50% 160 249 103
40% 160 249 130
30% 160 249 150
Entity #22: Chains: V - P-SITE tRNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - E-SITE tRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE tRNA rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: X - mRNA rna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 37 728
95% 8 37 1031
90% 8 37 1052
70% 8 37 1095
50% 32 81 438
40% 32 82 457
30% 32 82 475
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 261 29
95% 160 269 39
90% 160 269 42
70% 160 269 52
50% 199 376 39
40% 199 377 52
30% 199 377 74
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 24
95% 160 268 42
90% 160 268 44
70% 160 268 54
50% 200 380 36
40% 200 380 48
30% 200 382 71
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 273 18
95% 168 279 29
90% 168 279 30
70% 168 279 44
50% 168 279 82
40% 168 279 106
30% 194 326 94
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 272 19
95% 161 273 36
90% 161 273 38
70% 161 273 49
50% 187 321 56
40% 187 322 73
30% 187 322 96
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 21
95% 160 268 40
90% 161 272 39
70% 161 272 50
50% 202 382 35
40% 203 384 46
30% 226 441 47
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 113 138
95% 160 268 44
90% 160 268 46
70% 160 268 56
50% 199 376 40
40% 199 376 54
30% 221 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.