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Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0L
Cluster # 1105 Members. Sequence cutoff: 70% Cluster size: 38 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4JYA 18 R 30S ribosomal protein S18 300852  
2 4KHP 18 R 30S Ribosomal protein S18 300852  
3 4JUW 12 R 30S ribosomal protein S18 300852  
4 4JV5 18 R 30S ribosomal protein S18 300852  
5 4GKK 18 R 30S ribosomal protein S18 300852  
6 4GKJ 18 R 30S ribosomal protein S18 300852  
7 4K0K 18 R 30S ribosomal protein S18 300852  
8 4K0L 18 R 30S Ribosomal protein S18 300852  
9 4K0P 18 R 30S Ribosomal protein S18 300852  
10 3PYS 18 R 30S ribosomal protein S18 262724  
11 3PYU 18 R 30S ribosomal protein S18 262724  
12 4L6K 18 R 30S ribosomal protein S18 262724  
13 4L6M 18 R 30S ribosomal protein S18 262724  
14 4KFH 21 R 30S ribosomal protein S18 262724  
15 4KFK 21 R 30S ribosomal protein S18 262724  
16 3PYN 18 R 30S ribosomal protein S18 262724  
17 3PYQ 18 R 30S ribosomal protein S18 262724  
18 4KCY 17 R 30S ribosomal protein S18 262724  
19 4KD0 17 R 30S ribosomal protein S18 262724  
20 3MR8 18 R 30S ribosomal protein S18 262724  
21 3MS0 18 R 30S ribosomal protein S18 262724  
22 4KD8 17 R 30S ribosomal protein S18 262724  
23 4KDA 17 R 30S ribosomal protein S18 262724  
24 4KBT 17 R 30S ribosomal protein S18 262724  
25 4KBV 17 R 30S ribosomal protein S18 262724  
26 4KDG 17 R 30S ribosomal protein S18 262724  
27 4KDJ 17 R 30S ribosomal protein S18 262724  
28 4QS0 17 R 30S ribosomal protein S18 262724  
29 4QS2 17 R 30S ribosomal protein S18 262724  
30 1PNS 20 R 30S ribosomal protein S18 562  
31 1PNX 18 R 30S ribosomal protein S18 562  
32 1VOQ 18 R 30S ribosomal protein S18 562  
33 1VOS 18 R 30S ribosomal protein S18 562  
34 1VOV 18 R 30S ribosomal protein S18 562  
35 1VOX 18 R 30S ribosomal protein S18 562  
36 1VOZ 18 R 30S ribosomal protein S18 562  
37 3FIC 12 R 30S ribosomal protein S18 274  
38 1X18 8 H 30S ribosomal protein S18 274  
 
Sequence Clusters for the Sequence Entities in PDB 4K0L
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 265 27
95% 160 267 47
90% 160 267 49
70% 160 267 59
50% 207 384 34
40% 207 384 46
30% 207 389 65
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 25
95% 160 268 43
90% 160 268 45
70% 160 268 55
50% 201 378 41
40% 239 454 34
30% 239 454 44
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 237 35
95% 160 275 35
90% 160 275 37
70% 201 390 24
50% 201 390 33
40% 201 390 45
30% 201 390 68
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 269 22
95% 160 269 41
90% 160 269 43
70% 160 269 53
50% 201 380 38
40% 201 380 51
30% 237 452 47
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 267 26
95% 160 267 48
90% 160 267 50
70% 160 267 60
50% 160 267 94
40% 160 267 119
30% 160 267 141
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 271 20
95% 164 276 32
90% 164 276 34
70% 164 276 47
50% 208 391 32
40% 208 391 43
30% 208 391 67
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 263 28
95% 160 268 45
90% 160 268 47
70% 160 268 57
50% 160 268 92
40% 160 268 117
30% 201 378 76
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 170 54
95% 159 262 49
90% 160 266 51
70% 160 266 61
50% 160 266 95
40% 160 266 120
30% 160 266 142
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 28 1128
95% 8 38 1053
90% 8 38 1074
70% 8 38 1105
50% 8 38 1166
40% 8 38 1187
30% 8 38 1164
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 37 769
95% 8 37 1079
90% 8 37 1098
70% 8 37 1137
50% 202 381 37
40% 202 381 49
30% 202 381 72
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 23
95% 160 269 38
90% 160 269 41
70% 160 269 51
50% 160 269 91
40% 201 378 53
30% 201 378 75
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 206 42
95% 160 267 46
90% 160 267 48
70% 160 267 58
50% 160 267 93
40% 160 267 118
30% 160 267 140
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 249 34
95% 160 249 53
90% 160 249 55
70% 160 249 68
50% 160 249 105
40% 160 249 132
30% 160 249 151
Entity #22: Chains: V - P-SITE tRNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - E-SITE tRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE tRNA rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: X - mRNA rna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 37 763
95% 8 37 1070
90% 8 37 1090
70% 8 37 1124
50% 34 83 432
40% 34 84 455
30% 34 84 473
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 261 29
95% 160 269 39
90% 160 269 42
70% 160 269 52
50% 201 378 39
40% 201 379 52
30% 201 379 74
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 24
95% 160 268 42
90% 160 268 44
70% 160 268 54
50% 202 382 36
40% 202 382 48
30% 202 384 71
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 273 18
95% 168 279 29
90% 168 279 30
70% 168 279 44
50% 168 279 86
40% 168 279 108
30% 196 328 94
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 272 19
95% 161 273 36
90% 161 273 38
70% 161 273 49
50% 189 323 56
40% 189 324 74
30% 189 324 96
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 21
95% 160 268 40
90% 161 272 39
70% 161 272 50
50% 204 384 35
40% 205 386 47
30% 242 459 43
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 113 155
95% 160 268 44
90% 160 268 46
70% 160 268 56
50% 201 378 40
40% 201 378 54
30% 237 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.