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Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0L
Cluster # 62 Members. Sequence cutoff: 100% Cluster size: 157 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4LFB 17 Q ribosomal protein S17 300852  
2 4QCM 17 Q 30S ribosomal protein S17 300852  
3 4QCO 17 Q 30S ribosomal protein S17 300852  
4 4QCQ 17 Q 30S ribosomal protein S17 300852  
5 4QCS 17 Q 30S ribosomal protein S17 300852  
6 3V2C 17 Q 30S Ribosomal Protein S17 274  
7 3V2E 17 Q 30S Ribosomal Protein S17 274  
8 4JI1 17 Q RIBOSOMAL PROTEIN S17 300852  
9 4LF7 17 Q ribosomal protein S17 300852  
10 4LF8 17 Q ribosomal protein S17 300852  
11 2UUB 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
12 4JYA 17 Q 30S ribosomal protein S17 300852  
13 4KHP 17 Q 30S Ribosomal protein S17 300852  
14 4LF9 17 Q ribosomal protein S17 300852  
15 4JUW 11 Q 30S ribosomal protein S17 300852  
16 3UZ6 17 T 30S RIBOSOMAL PROTEIN S17 300852  
17 3UZ7 17 T 30S RIBOSOMAL PROTEIN S17 300852  
18 4CR1 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
19 4JI3 17 Q RIBOSOMAL PROTEIN S17 300852  
20 4JI6 17 Q RIBOSOMAL PROTEIN S17 300852  
21 4JI8 17 Q RIBOSOMAL PROTEIN S17 300852  
22 4NVU 17 Q 30S Ribosomal Protein S17 274  
23 4NVW 17 Q 30S Ribosomal Protein S17 274  
24 4LF4 17 Q ribosomal protein S17 300852  
25 4LF6 17 Q ribosomal protein S17 300852  
26 4JI7 17 Q RIBOSOMAL PROTEIN S17 300852  
27 3UYD 17 T 30S RIBOSOMAL PROTEIN S17 300852  
28 3UYF 17 T 30S RIBOSOMAL PROTEIN S17 300852  
29 2UUA 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
30 3TVF 17 T 30S RIBOSOMAL PROTEIN S17 300852  
31 3TVG 17 T 30S RIBOSOMAL PROTEIN S17 300852  
32 4DH9 17 Q 30S Ribosomal Protein S17 274  
33 4DHB 17 Q 30S Ribosomal Protein S17 274  
34 4QCY 17 Q 30S ribosomal protein S17 300852  
35 4QD0 17 Q 30S ribosomal protein S17 300852  
36 1VX8 17 Q 30S ribosomal protein S17 300852  
37 1VXI 17 Q 30S ribosomal protein S17 300852  
38 4LFA 17 Q ribosomal protein S17 300852  
39 4JI0 17 Q ribosomal protein S17 300852  
40 4NVY 17 Q 30S Ribosomal Protein S17 274  
41 4NW0 17 Q 30S Ribosomal Protein S17 274  
42 4JI2 17 Q RIBOSOMAL PROTEIN S17 300852  
43 4JV5 17 Q 30S ribosomal protein S17 300852  
44 3V22 17 Q 30S Ribosomal Protein S17 300852  
45 3V24 17 Q 30S ribosomal protein S17 300852  
46 2UUC 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
47 4LFC 17 Q ribosomal protein S17 300852  
48 4JI4 17 Q RIBOSOMAL PROTEIN S17 300852  
49 4QCU 17 Q 30S ribosomal protein S17 300852  
50 4QCW 17 Q 30S ribosomal protein S17 300852  
51 4G5T 17 T 30S RIBOSOMAL PROTEIN S17 300852  
52 4G5V 17 T 30S RIBOSOMAL PROTEIN S17 300852  
53 3I8G 17 T 30S ribosomal protein S17 300852  
54 3I8H 17 T 30S ribosomal protein S17 300852  
55 3UZL 17 T 30S RIBOSOMAL PROTEIN S17 300852  
56 3UZM 17 T 30S RIBOSOMAL PROTEIN S17 300852  
57 3V26 17 Q 30S Ribosomal Protein S17 300852  
58 3V28 17 Q 30S Ribosomal Protein S17 300852  
59 4JI5 17 Q RIBOSOMAL PROTEIN S17 300852  
60 4K0K 17 Q 30S ribosomal protein S17 300852  
61 3UZ3 17 T 30S RIBOSOMAL PROTEIN S17 300852  
62 3UZ4 17 T 30S RIBOSOMAL PROTEIN S17 300852  
63 4LF5 17 Q ribosomal protein S17 300852  
64 4G5K 17 T 30S RIBOSOMAL PROTEIN S17 300852  
65 4G5M 17 T 30S RIBOSOMAL PROTEIN S17 300852  
66 2X9R 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
67 2X9T 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
68 3OHY 17 Q 30S ribosomal protein S17 300852  
69 3OI0 17 Q 30S ribosomal protein S17 300852  
70 3UZG 17 T 30S RIBOSOMAL PROTEIN S17 300852  
71 3UZI 17 T 30S RIBOSOMAL PROTEIN S17 300852  
72 2UU9 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
73 4ABR 18 Q 30S RIBOSOMAL PROTEIN S17 300852  
74 4NXM 17 Q ribosomal protein S17 300852  
75 2XQD 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
76 3OHC 17 Q 30S ribosomal protein S17 300852  
77 3OHD 17 Q 30S ribosomal protein S17 300852  
78 3OGE 17 Q 30S ribosomal protein S17 300852  
79 3OGY 17 Q 30S ribosomal protein S17 300852  
80 4NXN 17 Q ribosomal protein S17 300852  
81 1VXP 17 Q 30S ribosomal protein S17 300852  
82 1VXS 17 Q 30S ribosomal protein S17 300852  
83 2J00 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
84 2J02 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
85 3KNH 17 Q 30S ribosomal protein S17 300852  
86 2Y10 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
87 2Y18 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
88 3UXS 17 Q 30S ribosomal protein S17 300852  
89 3UXT 17 Q 30S ribosomal protein S17 300852  
90 2XG1 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
91 2XFZ 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
92 2Y0Y 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
93 2Y12 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
94 3KIQ 16 q 30S ribosomal protein S17 300852  
95 3KIS 16 q 30S ribosomal protein S17 300852  
96 2WDG 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
97 2WDH 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
98 2WH1 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
99 2WH3 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
100 1VVL 17 Q 30S ribosomal protein S17 300852  
101 1VVN 17 Q 30S ribosomal protein S17 300852  
102 2Y0U 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
103 2Y0W 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
104 2WDK 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
105 2WDM 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
106 3OI2 17 Q 30S ribosomal protein S17 300852  
107 3OI4 17 Q 30S ribosomal protein S17 300852  
108 4BYB 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
109 4BYD 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
110 2Y14 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
111 2Y16 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
112 4K0L 17 Q 30S Ribosomal protein S17 300852  
113 4K0P 17 Q 30S Ribosomal protein S17 300852  
114 3I9B 17 T 30S RIBOSOMAL PROTEIN S17 300852  
115 3I9D 17 T 30S ribosomal protein S17 300852  
116 3ZN7 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
117 3ZND 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
118 4EJ9 17 Q 30S ribosomal protein S17 300852  
119 4EJA 17 Q 30S ribosomal protein S17 300852  
120 3KNL 17 Q 30S ribosomal protein S17 300852  
121 3KNN 17 Q 30S ribosomal protein S17 300852  
122 3HUW 17 Q 30S ribosomal protein S17 300852  
123 3HUY 17 Q 30S ribosomal protein S17 300852  
124 3KNJ 17 Q 30S ribosomal protein S17 300852  
125 3KIU 16 q 30S ribosomal protein S17 300852  
126 3KIX 16 q 30S ribosomal protein S17 300852  
127 1VY0 17 Q 30S ribosomal protein S17 300852  
128 1VY2 17 Q 30S ribosomal protein S17 300852  
129 4B8F 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
130 4B8H 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
131 1VXK 17 Q 30S ribosomal protein S17 300852  
132 1VXM 17 Q 30S ribosomal protein S17 300852  
133 2WRI 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
134 2WRK 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
135 4KWZ 17 Q 30S ribosomal protein S17 300852  
136 4KX1 17 Q 30S ribosomal protein S17 300852  
137 1VVX 17 Q 30S ribosomal protein S17 300852  
138 1VVZ 17 Q 30S ribosomal protein S17 300852  
139 4OX9 17 Q 30S ribosomal protein S17 300852  
140 2V46 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
141 2V48 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
142 1VVP 17 Q 30S ribosomal protein S17 300852  
143 1VVR 17 Q 30S ribosomal protein S17 300852  
144 3V6U 17 Q 30S ribosomal protein S17 300852  
145 3V6V 17 Q 30S ribosomal protein S17 300852  
146 1VVT 17 Q 30S ribosomal protein S17 300852  
147 1VVV 17 Q 30S ribosomal protein S17 300852  
148 4KD8 16 Q 30S ribosomal protein S17 262724  
149 4KDA 16 Q 30S ribosomal protein S17 262724  
150 2WRN 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
151 2WRQ 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
152 3ZVO 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
153 4KDG 16 Q 30S ribosomal protein S17 262724  
154 4KDJ 16 Q 30S ribosomal protein S17 262724  
155 2XUY 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
156 2XSY 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
157 3FIC 11 Q 30S ribosomal protein S17 274  
 
Sequence Clusters for the Sequence Entities in PDB 4K0L
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 252 29
95% 151 254 48
90% 151 254 51
70% 151 254 63
50% 196 369 34
40% 196 369 48
30% 196 374 67
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 255 27
95% 151 255 44
90% 151 255 47
70% 151 255 59
50% 190 363 42
40% 194 403 39
30% 194 403 53
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 114 224 37
95% 151 262 36
90% 151 262 38
70% 190 375 24
50% 190 375 33
40% 190 375 47
30% 190 375 71
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 256 24
95% 151 256 42
90% 151 256 45
70% 151 256 57
50% 190 365 39
40% 190 365 53
30% 192 401 57
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 254 28
95% 151 254 49
90% 151 254 52
70% 151 254 64
50% 151 254 99
40% 151 254 124
30% 151 254 144
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 258 21
95% 155 263 35
90% 155 263 37
70% 155 263 48
50% 197 376 32
40% 197 376 45
30% 197 376 69
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 250 30
95% 151 255 46
90% 151 255 49
70% 151 255 61
50% 151 255 97
40% 151 255 122
30% 190 363 78
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 157 62
95% 150 249 51
90% 151 253 53
70% 151 253 65
50% 151 253 100
40% 151 253 126
30% 151 253 146
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 26 1130
95% 8 36 1041
90% 8 36 1064
70% 8 36 1093
50% 8 36 1157
40% 8 36 1189
30% 8 36 1178
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 35 741
95% 8 35 1070
90% 8 35 1092
70% 8 35 1130
50% 191 366 38
40% 191 366 52
30% 191 366 75
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 255 25
95% 151 256 39
90% 151 256 43
70% 151 256 55
50% 151 256 96
40% 190 363 55
30% 190 363 77
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 193 43
95% 151 254 47
90% 151 254 50
70% 151 254 62
50% 151 254 98
40% 151 254 123
30% 151 254 143
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 238 34
95% 151 238 55
90% 151 238 59
70% 151 238 71
50% 151 238 110
40% 151 238 133
30% 151 238 153
Entity #22: Chains: V - P-SITE tRNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - E-SITE tRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE tRNA rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: X - mRNA rna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 35 734
95% 8 35 1063
90% 8 35 1085
70% 8 35 1119
50% 32 79 449
40% 32 80 467
30% 32 80 487
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 248 32
95% 151 256 40
90% 151 256 44
70% 151 256 56
50% 190 363 40
40% 190 364 54
30% 190 364 76
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 255 26
95% 151 255 43
90% 151 255 46
70% 151 255 58
50% 191 367 37
40% 191 367 51
30% 191 369 72
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 260 18
95% 159 266 34
90% 159 266 36
70% 159 266 47
50% 159 266 88
40% 159 266 112
30% 185 313 94
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 259 20
95% 152 260 37
90% 152 260 39
70% 152 260 51
50% 178 308 57
40% 178 309 73
30% 178 309 97
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 255 23
95% 151 255 41
90% 152 259 40
70% 152 259 52
50% 193 369 36
40% 194 371 49
30% 197 408 50
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 113 133
95% 151 255 45
90% 151 255 48
70% 151 255 60
50% 190 363 41
40% 190 363 56
30% 192 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.