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Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0L
Cluster # 53 Members. Sequence cutoff: 100% Cluster size: 170 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4RB5 17 Q 30S Ribosomal Protein S17 300852  
2 4RB7 17 Q 30S Ribosomal Protein S17 300852  
3 4RB9 17 Q 30S Ribosomal Protein S17 300852  
4 4RBB 17 Q 30S Ribosomal Protein S17 300852  
5 4LFB 17 Q ribosomal protein S17 300852  
6 4QCM 17 Q 30S ribosomal protein S17 300852  
7 4QCO 17 Q 30S ribosomal protein S17 300852  
8 4RBH 17 Q 30S Ribosomal Protein S17 300852  
9 4RBJ 17 Q 30S Ribosomal Protein S17 300852  
10 4QCQ 17 Q 30S ribosomal protein S17 300852  
11 4QCS 17 Q 30S ribosomal protein S17 300852  
12 4RBD 17 Q 30S Ribosomal Protein S17 300852  
13 4RBF 17 Q 30S Ribosomal Protein S17 300852  
14 3V2C 17 Q 30S Ribosomal Protein S17 274  
15 3V2E 17 Q 30S Ribosomal Protein S17 274  
16 4JI1 17 Q RIBOSOMAL PROTEIN S17 300852  
17 4LF7 17 Q ribosomal protein S17 300852  
18 4LF8 17 Q ribosomal protein S17 300852  
19 2UUB 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
20 4JYA 17 Q 30S ribosomal protein S17 300852  
21 4KHP 17 Q 30S Ribosomal protein S17 300852  
22 4LF9 17 Q ribosomal protein S17 300852  
23 4JUW 11 Q 30S ribosomal protein S17 300852  
24 3UZ6 17 T 30S RIBOSOMAL PROTEIN S17 300852  
25 3UZ7 17 T 30S RIBOSOMAL PROTEIN S17 300852  
26 4CR1 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
27 4JI3 17 Q RIBOSOMAL PROTEIN S17 300852  
28 4JI6 17 Q RIBOSOMAL PROTEIN S17 300852  
29 4JI8 17 Q RIBOSOMAL PROTEIN S17 300852  
30 4NVU 17 Q 30S Ribosomal Protein S17 274  
31 4NVW 17 Q 30S Ribosomal Protein S17 274  
32 4LF4 17 Q ribosomal protein S17 300852  
33 4LF6 17 Q ribosomal protein S17 300852  
34 4JI7 17 Q RIBOSOMAL PROTEIN S17 300852  
35 3UYD 17 T 30S RIBOSOMAL PROTEIN S17 300852  
36 3UYF 17 T 30S RIBOSOMAL PROTEIN S17 300852  
37 2UUA 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
38 3TVF 17 T 30S RIBOSOMAL PROTEIN S17 300852  
39 3TVG 17 T 30S RIBOSOMAL PROTEIN S17 300852  
40 4DH9 17 Q 30S Ribosomal Protein S17 274  
41 4DHB 17 Q 30S Ribosomal Protein S17 274  
42 4QCY 17 Q 30S ribosomal protein S17 300852  
43 4QD0 17 Q 30S ribosomal protein S17 300852  
44 1VX8 17 Q 30S ribosomal protein S17 300852  
45 1VXI 17 Q 30S ribosomal protein S17 300852  
46 4LFA 17 Q ribosomal protein S17 300852  
47 4JI0 17 Q ribosomal protein S17 300852  
48 4NVY 17 Q 30S Ribosomal Protein S17 274  
49 4NW0 17 Q 30S Ribosomal Protein S17 274  
50 4JI2 17 Q RIBOSOMAL PROTEIN S17 300852  
51 4JV5 17 Q 30S ribosomal protein S17 300852  
52 3V22 17 Q 30S Ribosomal Protein S17 300852  
53 3V24 17 Q 30S ribosomal protein S17 300852  
54 2UUC 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
55 4LFC 17 Q ribosomal protein S17 300852  
56 4JI4 17 Q RIBOSOMAL PROTEIN S17 300852  
57 4QCU 17 Q 30S ribosomal protein S17 300852  
58 4QCW 17 Q 30S ribosomal protein S17 300852  
59 4G5T 17 T 30S RIBOSOMAL PROTEIN S17 300852  
60 4G5V 17 T 30S RIBOSOMAL PROTEIN S17 300852  
61 3I8G 17 T 30S ribosomal protein S17 300852  
62 3I8H 17 T 30S ribosomal protein S17 300852  
63 3UZL 17 T 30S RIBOSOMAL PROTEIN S17 300852  
64 3UZM 17 T 30S RIBOSOMAL PROTEIN S17 300852  
65 3V26 17 Q 30S Ribosomal Protein S17 300852  
66 3V28 17 Q 30S Ribosomal Protein S17 300852  
67 4JI5 17 Q RIBOSOMAL PROTEIN S17 300852  
68 4K0K 17 Q 30S ribosomal protein S17 300852  
69 3UZ3 17 T 30S RIBOSOMAL PROTEIN S17 300852  
70 3UZ4 17 T 30S RIBOSOMAL PROTEIN S17 300852  
71 4QJT 18 q 30S ribosomal protein S17 300852  
72 4LF5 17 Q ribosomal protein S17 300852  
73 4G5K 17 T 30S RIBOSOMAL PROTEIN S17 300852  
74 4G5M 17 T 30S RIBOSOMAL PROTEIN S17 300852  
75 2X9R 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
76 2X9T 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
77 3OHY 17 Q 30S ribosomal protein S17 300852  
78 3OI0 17 Q 30S ribosomal protein S17 300852  
79 3UZG 17 T 30S RIBOSOMAL PROTEIN S17 300852  
80 3UZI 17 T 30S RIBOSOMAL PROTEIN S17 300852  
81 2UU9 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
82 4ABR 18 Q 30S RIBOSOMAL PROTEIN S17 300852  
83 4NXM 17 Q ribosomal protein S17 300852  
84 2XQD 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
85 3OHC 17 Q 30S ribosomal protein S17 300852  
86 3OHD 17 Q 30S ribosomal protein S17 300852  
87 3OGE 17 Q 30S ribosomal protein S17 300852  
88 3OGY 17 Q 30S ribosomal protein S17 300852  
89 4NXN 17 Q ribosomal protein S17 300852  
90 1VXP 17 Q 30S ribosomal protein S17 300852  
91 1VXS 17 Q 30S ribosomal protein S17 300852  
92 2J00 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
93 2J02 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
94 3KNH 17 Q 30S ribosomal protein S17 300852  
95 2Y10 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
96 2Y18 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
97 3UXS 17 Q 30S ribosomal protein S17 300852  
98 3UXT 17 Q 30S ribosomal protein S17 300852  
99 2XG1 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
100 2XFZ 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
101 2Y0Y 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
102 2Y12 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
103 3KIQ 16 q 30S ribosomal protein S17 300852  
104 3KIS 16 q 30S ribosomal protein S17 300852  
105 2WDG 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
106 2WDH 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
107 2WH1 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
108 2WH3 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
109 1VVL 17 Q 30S ribosomal protein S17 300852  
110 1VVN 17 Q 30S ribosomal protein S17 300852  
111 2Y0U 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
112 2Y0W 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
113 2WDK 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
114 2WDM 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
115 3OI2 17 Q 30S ribosomal protein S17 300852  
116 3OI4 17 Q 30S ribosomal protein S17 300852  
117 4BYB 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
118 4BYD 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
119 2Y14 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
120 2Y16 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
121 4K0L 17 Q 30S Ribosomal protein S17 300852  
122 4K0P 17 Q 30S Ribosomal protein S17 300852  
123 3I9B 17 T 30S RIBOSOMAL PROTEIN S17 300852  
124 3I9D 17 T 30S ribosomal protein S17 300852  
125 3ZN7 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
126 3ZND 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
127 4EJ9 17 Q 30S ribosomal protein S17 300852  
128 4EJA 17 Q 30S ribosomal protein S17 300852  
129 3KNL 17 Q 30S ribosomal protein S17 300852  
130 3KNN 17 Q 30S ribosomal protein S17 300852  
131 3HUW 17 Q 30S ribosomal protein S17 300852  
132 3HUY 17 Q 30S ribosomal protein S17 300852  
133 3KNJ 17 Q 30S ribosomal protein S17 300852  
134 3KIU 16 q 30S ribosomal protein S17 300852  
135 3KIX 16 q 30S ribosomal protein S17 300852  
136 1VY0 17 Q 30S ribosomal protein S17 300852  
137 1VY2 17 Q 30S ribosomal protein S17 300852  
138 4B8F 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
139 4B8H 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
140 1VXK 17 Q 30S ribosomal protein S17 300852  
141 1VXM 17 Q 30S ribosomal protein S17 300852  
142 4W2A 17 R 30S ribosomal protein S17 300852  
143 4W2C 17 R 30S ribosomal protein S17 300852  
144 2WRI 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
145 2WRK 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
146 4KWZ 17 Q 30S ribosomal protein S17 300852  
147 4KX1 17 Q 30S ribosomal protein S17 300852  
148 1VVX 17 Q 30S ribosomal protein S17 300852  
149 1VVZ 17 Q 30S ribosomal protein S17 300852  
150 4OX9 17 Q 30S ribosomal protein S17 300852  
151 2V46 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
152 2V48 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
153 1VVP 17 Q 30S ribosomal protein S17 300852  
154 1VVR 17 Q 30S ribosomal protein S17 300852  
155 3V6U 17 Q 30S ribosomal protein S17 300852  
156 3V6V 17 Q 30S ribosomal protein S17 300852  
157 1VVT 17 Q 30S ribosomal protein S17 300852  
158 1VVV 17 Q 30S ribosomal protein S17 300852  
159 4KD8 16 Q 30S ribosomal protein S17 262724  
160 4KDA 16 Q 30S ribosomal protein S17 262724  
161 2WRN 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
162 2WRQ 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
163 3ZVO 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
164 4KDG 16 Q 30S ribosomal protein S17 262724  
165 4KDJ 16 Q 30S ribosomal protein S17 262724  
166 4QS0 16 Q 30S ribosomal protein S17 262724  
167 4QS2 16 Q 30S ribosomal protein S17 262724  
168 2XUY 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
169 2XSY 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
170 3FIC 11 Q 30S ribosomal protein S17 274  
 
Sequence Clusters for the Sequence Entities in PDB 4K0L
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S Ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 265 27
95% 160 267 47
90% 160 267 49
70% 160 267 59
50% 205 382 34
40% 205 382 45
30% 205 387 65
Entity #11: Chains: K - 30S Ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 25
95% 160 268 43
90% 160 268 45
70% 160 268 55
50% 199 376 41
40% 203 416 40
30% 203 416 52
Entity #12: Chains: L - 30S Ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 237 35
95% 160 275 35
90% 160 275 37
70% 199 388 24
50% 199 388 33
40% 199 388 44
30% 199 388 68
Entity #13: Chains: M - 30S Ribosomal protein S13 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 269 22
95% 160 269 41
90% 160 269 43
70% 160 269 53
50% 199 378 38
40% 199 378 51
30% 201 414 55
Entity #14: Chains: N - 30S Ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 267 26
95% 160 267 48
90% 160 267 50
70% 160 267 60
50% 160 267 93
40% 160 267 119
30% 160 267 140
Entity #15: Chains: O - 30S Ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 271 20
95% 164 276 32
90% 164 276 34
70% 164 276 47
50% 206 389 32
40% 206 389 43
30% 206 389 67
Entity #16: Chains: P - 30S Ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 263 28
95% 160 268 45
90% 160 268 47
70% 160 268 57
50% 160 268 91
40% 160 268 117
30% 199 376 76
Entity #17: Chains: Q - 30S Ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 170 53
95% 159 262 49
90% 160 266 51
70% 160 266 61
50% 160 266 94
40% 160 266 120
30% 160 266 142
Entity #18: Chains: R - 30S Ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 28 1046
95% 8 38 975
90% 8 38 998
70% 8 38 1029
50% 8 38 1094
40% 8 38 1118
30% 8 38 1098
Entity #19: Chains: S - 30S Ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 37 697
95% 8 37 1000
90% 8 37 1022
70% 8 37 1059
50% 200 379 37
40% 200 379 49
30% 200 379 72
Entity #2: Chains: B - 30S Ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 23
95% 160 269 38
90% 160 269 41
70% 160 269 51
50% 160 269 90
40% 199 376 53
30% 199 376 75
Entity #20: Chains: T - 30S Ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 206 42
95% 160 267 46
90% 160 267 48
70% 160 267 58
50% 160 267 92
40% 160 267 118
30% 160 267 139
Entity #21: Chains: U - 30S Ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 249 33
95% 160 249 52
90% 160 249 55
70% 160 249 66
50% 160 249 103
40% 160 249 130
30% 160 249 150
Entity #22: Chains: V - P-SITE tRNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - E-SITE tRNA rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE tRNA rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: X - mRNA rna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S Ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 37 691
95% 8 37 991
90% 8 37 1013
70% 8 37 1045
50% 32 81 437
40% 32 82 456
30% 32 82 473
Entity #4: Chains: D - 30S Ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 261 29
95% 160 269 39
90% 160 269 42
70% 160 269 52
50% 199 376 39
40% 199 377 52
30% 199 377 74
Entity #5: Chains: E - 30S Ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 24
95% 160 268 42
90% 160 268 44
70% 160 268 54
50% 200 380 36
40% 200 380 48
30% 200 382 70
Entity #6: Chains: F - 30S Ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 273 18
95% 168 279 29
90% 168 279 30
70% 168 279 44
50% 168 279 82
40% 168 279 106
30% 194 326 94
Entity #7: Chains: G - 30S Ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 272 19
95% 161 273 36
90% 161 273 38
70% 161 273 49
50% 187 321 56
40% 187 322 73
30% 187 322 96
Entity #8: Chains: H - 30S Ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 268 21
95% 160 268 40
90% 161 272 39
70% 161 272 50
50% 202 382 35
40% 203 384 46
30% 206 421 51
Entity #9: Chains: I - 30S Ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 113 135
95% 160 268 44
90% 160 268 46
70% 160 268 56
50% 199 376 40
40% 199 376 54
30% 201 412 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.