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Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0K
Sequence Clusters for the Sequence Entities in PDB 4K0K
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1517 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 197 29
95% 84 198 45
90% 84 198 47
70% 84 198 60
50% 107 283 35
40% 107 283 45
30% 121 334 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 199 26
95% 84 199 40
90% 84 199 42
70% 84 199 54
50% 101 277 41
40% 117 335 35
30% 117 336 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 166 36
95% 84 206 31
90% 84 206 33
70% 101 288 24
50% 101 289 34
40% 101 289 44
30% 101 289 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 121 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 200 23
95% 84 200 38
90% 84 200 40
70% 84 200 51
50% 104 282 39
40% 104 282 50
30% 118 335 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 198 27
95% 84 198 46
90% 84 198 48
70% 84 199 57
50% 84 199 90
40% 84 199 113
30% 84 199 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 202 21
95% 88 207 30
90% 88 207 32
70% 88 207 43
50% 108 290 33
40% 108 291 43
30% 108 291 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 194 30
95% 84 199 42
90% 84 199 44
70% 84 199 56
50% 84 199 89
40% 84 200 112
30% 104 280 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 113 66
95% 83 193 50
90% 84 197 49
70% 84 197 61
50% 84 197 93
40% 84 197 116
30% 84 197 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 21 924
95% 7 27 942
90% 7 27 966
70% 7 27 1000
50% 7 27 1041
40% 7 27 1067
30% 7 27 1042
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 202 20
95% 85 202 33
90% 85 202 36
70% 85 202 47
50% 102 280 38
40% 102 280 49
30% 102 280 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 199 24
95% 84 200 35
90% 84 200 38
70% 84 200 48
50% 101 276 43
40% 101 277 52
30% 101 277 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 149 54
95% 84 198 44
90% 84 198 46
70% 84 198 59
50% 84 198 92
40% 84 198 114
30% 84 198 138
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 189 32
95% 84 189 52
90% 84 189 55
70% 84 189 67
50% 84 189 112
40% 84 189 135
30% 84 189 153
Entity #22: Chains: X - mRNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - RNA-ASL rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 25 714
95% 7 25 998
90% 7 25 1017
70% 7 25 1042
50% 21 61 403
40% 21 62 424
30% 21 62 429
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 192 31
95% 84 200 36
90% 84 200 39
70% 84 200 49
50% 101 277 40
40% 101 278 51
30% 101 278 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 199 25
95% 84 199 39
90% 84 199 41
70% 84 199 52
50% 102 281 37
40% 102 281 48
30% 102 283 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 204 18
95% 92 210 29
90% 92 210 31
70% 92 210 42
50% 92 210 83
40% 92 210 107
30% 108 249 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 203 19
95% 85 204 32
90% 85 204 34
70% 85 204 44
50% 103 247 55
40% 103 248 70
30% 103 248 94
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 199 22
95% 84 199 37
90% 85 203 35
70% 85 203 45
50% 104 283 36
40% 105 285 46
30% 120 339 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 90 159
95% 84 199 41
90% 84 199 43
70% 84 199 55
50% 101 277 42
40% 101 277 54
30% 115 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.