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Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0K
Sequence Clusters for the Sequence Entities in PDB 4K0K
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1517 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 217 36
95% 95 218 51
90% 95 218 55
70% 95 218 67
50% 119 306 31
40% 119 306 42
30% 133 368 40
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 219 34
95% 95 219 47
90% 95 219 51
70% 95 219 62
50% 113 300 42
40% 129 369 30
30% 129 370 38
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 182 46
95% 95 226 39
90% 95 226 43
70% 113 311 22
50% 113 312 30
40% 113 312 41
30% 113 312 57
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 121 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 220 32
95% 95 220 45
90% 95 220 49
70% 95 220 60
50% 116 305 39
40% 116 305 50
30% 130 369 44
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 218 35
95% 95 218 52
90% 95 218 56
70% 95 219 65
50% 95 219 92
40% 95 219 114
30% 95 219 128
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 222 29
95% 99 227 36
90% 99 227 40
70% 99 227 52
50% 120 313 29
40% 120 314 39
30% 120 314 54
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 214 37
95% 95 219 49
90% 95 219 53
70% 95 219 64
50% 95 219 91
40% 95 220 113
30% 116 303 70
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 133 59
95% 94 213 56
90% 95 217 58
70% 95 217 69
50% 95 217 94
40% 95 217 116
30% 95 217 130
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 21 890
95% 7 27 931
90% 7 27 956
70% 7 27 991
50% 7 27 1036
40% 7 27 1061
30% 7 27 1035
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 222 28
95% 96 222 41
90% 96 222 46
70% 96 222 57
50% 114 303 38
40% 114 303 48
30% 114 303 67
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 219 30
95% 95 220 42
90% 95 220 47
70% 95 220 58
50% 113 299 41
40% 113 300 51
30% 113 300 69
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 169 49
95% 95 218 50
90% 95 218 54
70% 95 218 66
50% 95 218 93
40% 95 218 115
30% 95 218 129
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 209 40
95% 95 209 59
90% 95 209 62
70% 95 209 73
50% 95 209 100
40% 95 209 123
30% 95 209 135
Entity #22: Chains: X - mRNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - RNA-ASL rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 26 700
95% 7 26 971
90% 7 26 996
70% 7 26 1031
50% 21 62 404
40% 21 63 426
30% 21 63 438
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 212 38
95% 95 220 43
90% 95 220 48
70% 95 220 59
50% 113 300 40
40% 113 301 49
30% 113 301 68
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 219 33
95% 95 219 46
90% 95 219 50
70% 95 219 61
50% 114 304 37
40% 114 304 47
30% 114 306 63
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 224 25
95% 103 230 24
90% 103 230 29
70% 103 230 41
50% 103 230 83
40% 103 230 108
30% 119 269 80
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 223 27
95% 96 224 40
90% 96 224 44
70% 96 224 55
50% 114 267 51
40% 114 268 64
30% 114 268 83
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 219 31
95% 95 219 44
90% 96 223 45
70% 96 223 56
50% 116 306 35
40% 117 308 43
30% 132 373 37
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 89 180
95% 95 219 48
90% 95 219 52
70% 95 219 63
50% 113 300 43
40% 113 300 52
30% 127 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.