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Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0K
Sequence Clusters for the Sequence Entities in PDB 4K0K
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1517 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 193 28
95% 82 194 45
90% 82 194 47
70% 82 194 58
50% 104 275 34
40% 104 275 45
30% 104 280 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 195 26
95% 82 195 41
90% 82 195 43
70% 82 195 54
50% 98 269 41
40% 114 322 35
30% 114 322 44
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 164 35
95% 82 202 32
90% 82 202 33
70% 98 281 23
50% 98 281 33
40% 98 281 44
30% 98 281 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 121 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 196 23
95% 82 196 39
90% 82 196 41
70% 82 196 52
50% 101 274 38
40% 101 274 50
30% 115 323 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 194 27
95% 82 194 46
90% 82 194 48
70% 82 194 59
50% 82 194 92
40% 82 194 115
30% 82 194 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 198 21
95% 86 203 30
90% 86 203 31
70% 86 203 43
50% 105 282 32
40% 105 282 42
30% 105 282 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 190 29
95% 82 195 43
90% 82 195 45
70% 82 195 56
50% 82 195 89
40% 82 195 113
30% 101 272 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 110 54
95% 81 189 48
90% 82 193 50
70% 82 193 61
50% 82 193 95
40% 82 193 120
30% 82 193 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 19 1039
95% 7 25 1025
90% 7 25 1042
70% 7 25 1065
50% 7 25 1128
40% 7 25 1152
30% 7 25 1130
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 24 746
95% 7 24 1045
90% 7 24 1061
70% 7 24 1088
50% 99 272 37
40% 99 272 49
30% 99 272 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 195 24
95% 82 196 36
90% 82 196 39
70% 82 196 50
50% 82 196 87
40% 98 269 52
30% 98 269 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 146 42
95% 82 194 44
90% 82 194 46
70% 82 194 57
50% 82 194 91
40% 82 194 114
30% 82 194 136
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 185 32
95% 82 185 51
90% 82 185 54
70% 82 185 65
50% 82 185 101
40% 82 185 127
30% 82 185 147
Entity #22: Chains: X - mRNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - RNA-ASL rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 23 763
95% 7 23 1073
90% 7 23 1093
70% 7 23 1118
50% 20 57 423
40% 20 58 447
30% 20 58 460
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 188 30
95% 82 196 37
90% 82 196 40
70% 82 196 51
50% 98 269 39
40% 98 270 51
30% 98 270 73
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 195 25
95% 82 195 40
90% 82 195 42
70% 82 195 53
50% 99 273 36
40% 99 273 48
30% 99 275 70
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 200 17
95% 90 206 29
90% 90 206 30
70% 90 206 40
50% 90 206 80
40% 90 206 105
30% 105 243 90
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 199 20
95% 83 200 33
90% 83 200 34
70% 83 200 47
50% 100 241 54
40% 100 242 70
30% 100 242 94
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 195 22
95% 82 195 38
90% 83 199 35
70% 83 199 48
50% 101 275 35
40% 102 277 46
30% 117 327 43
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 89 144
95% 82 195 42
90% 82 195 44
70% 82 195 55
50% 98 269 40
40% 98 269 53
30% 112 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.