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Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0K
Sequence Clusters for the Sequence Entities in PDB 4K0K
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1517 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 252 29
95% 91 254 48
90% 91 254 51
70% 91 254 63
50% 131 369 34
40% 131 369 48
30% 131 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 255 27
95% 91 255 44
90% 91 255 47
70% 91 255 59
50% 125 363 42
40% 129 403 39
30% 129 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 224 37
95% 91 262 36
90% 91 262 38
70% 125 375 24
50% 125 375 33
40% 125 375 47
30% 125 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 121 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 256 24
95% 91 256 42
90% 91 256 45
70% 91 256 57
50% 125 365 39
40% 125 365 53
30% 127 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 254 28
95% 91 254 49
90% 91 254 52
70% 91 254 64
50% 91 254 99
40% 91 254 124
30% 91 254 144
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 258 21
95% 95 263 35
90% 95 263 37
70% 95 263 48
50% 132 376 32
40% 132 376 45
30% 132 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 250 31
95% 91 255 46
90% 91 255 49
70% 91 255 61
50% 91 255 97
40% 91 255 122
30% 125 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 157 62
95% 90 249 51
90% 91 253 53
70% 91 253 65
50% 91 253 100
40% 91 253 126
30% 91 253 146
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 26 1130
95% 7 36 1041
90% 7 36 1064
70% 7 36 1093
50% 7 36 1157
40% 7 36 1190
30% 7 36 1178
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 35 742
95% 7 35 1070
90% 7 35 1092
70% 7 35 1130
50% 126 366 38
40% 126 366 52
30% 126 366 75
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 255 25
95% 91 256 39
90% 91 256 43
70% 91 256 55
50% 91 256 96
40% 125 363 55
30% 125 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 193 43
95% 91 254 47
90% 91 254 50
70% 91 254 62
50% 91 254 98
40% 91 254 123
30% 91 254 143
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 238 34
95% 91 238 55
90% 91 238 59
70% 91 238 71
50% 91 238 110
40% 91 238 133
30% 91 238 153
Entity #22: Chains: X - mRNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - RNA-ASL rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 35 735
95% 7 35 1063
90% 7 35 1085
70% 7 35 1119
50% 29 79 449
40% 29 80 467
30% 29 80 487
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 248 32
95% 91 256 40
90% 91 256 44
70% 91 256 56
50% 125 363 40
40% 125 364 54
30% 125 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 255 26
95% 91 255 43
90% 91 255 46
70% 91 255 58
50% 126 367 37
40% 126 367 51
30% 126 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 260 18
95% 99 266 34
90% 99 266 36
70% 99 266 47
50% 99 266 88
40% 99 266 112
30% 123 313 95
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 259 20
95% 92 260 37
90% 92 260 39
70% 92 260 51
50% 115 308 57
40% 115 309 74
30% 115 309 97
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 255 23
95% 91 255 41
90% 92 259 40
70% 92 259 52
50% 128 369 36
40% 129 371 49
30% 132 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 113 134
95% 91 255 45
90% 91 255 48
70% 91 255 60
50% 125 363 41
40% 125 363 56
30% 127 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.