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Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0K
Sequence Clusters for the Sequence Entities in PDB 4K0K
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1517 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 218 36
95% 95 219 51
90% 95 219 55
70% 95 219 67
50% 118 306 33
40% 118 306 43
30% 132 360 42
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 220 34
95% 95 220 47
90% 95 220 51
70% 95 220 62
50% 112 300 42
40% 128 361 30
30% 128 362 41
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 183 46
95% 95 227 38
90% 95 227 42
70% 112 311 23
50% 112 312 32
40% 112 312 42
30% 112 312 57
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 121 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 221 32
95% 95 221 45
90% 95 221 49
70% 95 221 60
50% 115 305 38
40% 115 305 50
30% 129 361 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 219 35
95% 95 219 52
90% 95 219 56
70% 95 220 65
50% 95 220 92
40% 95 220 113
30% 95 220 126
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 223 29
95% 99 228 26
90% 99 228 31
70% 99 228 43
50% 119 313 29
40% 119 314 40
30% 119 314 55
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 215 37
95% 95 220 49
90% 95 220 53
70% 95 220 64
50% 95 220 91
40% 95 221 112
30% 115 303 70
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 134 59
95% 94 214 56
90% 95 218 58
70% 95 218 69
50% 95 218 94
40% 95 218 116
30% 95 218 128
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 22 883
95% 7 28 925
90% 7 28 948
70% 7 28 981
50% 7 28 1026
40% 7 28 1052
30% 7 28 1031
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 223 27
95% 96 223 41
90% 96 223 46
70% 96 223 57
50% 113 303 37
40% 113 303 48
30% 113 303 67
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 220 30
95% 95 221 42
90% 95 221 47
70% 95 221 58
50% 112 299 41
40% 112 300 51
30% 112 300 69
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 170 49
95% 95 219 50
90% 95 219 54
70% 95 219 66
50% 95 219 93
40% 95 219 114
30% 95 219 127
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 210 40
95% 95 210 59
90% 95 210 62
70% 95 210 73
50% 95 210 98
40% 95 210 120
30% 95 210 133
Entity #22: Chains: X - mRNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - RNA-ASL rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 26 694
95% 7 26 964
90% 7 26 989
70% 7 26 1020
50% 21 62 402
40% 21 63 424
30% 21 63 433
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 213 38
95% 95 221 43
90% 95 221 48
70% 95 221 59
50% 112 300 39
40% 112 301 49
30% 112 301 68
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 220 33
95% 95 220 46
90% 95 220 50
70% 95 220 61
50% 113 304 36
40% 113 304 47
30% 113 306 65
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 225 24
95% 103 231 24
90% 103 231 29
70% 103 231 41
50% 103 231 83
40% 103 231 105
30% 119 270 79
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 224 26
95% 96 225 40
90% 96 225 44
70% 96 225 55
50% 114 268 51
40% 114 269 62
30% 114 269 81
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 220 31
95% 95 220 44
90% 96 224 45
70% 96 224 56
50% 115 306 34
40% 116 308 44
30% 131 365 40
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 90 167
95% 95 220 48
90% 95 220 52
70% 95 220 63
50% 112 300 43
40% 112 300 52
30% 126 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.