Sequence Similarity Clusters for the Entities in PDB 4K0K

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 248 35
95 % 116 249 48
90 % 116 249 53
70 % 116 249 63
50 % 140 344 28
40 % 140 344 38
30 % 154 414 38
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 250 33
95 % 116 250 44
90 % 116 250 49
70 % 116 250 58
50 % 134 338 37
40 % 150 415 23
30 % 150 416 37
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 202 46
95 % 116 257 35
90 % 116 257 40
70 % 134 349 23
50 % 134 350 27
40 % 134 350 37
30 % 134 350 56
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 251 31
95 % 116 251 42
90 % 116 251 47
70 % 116 251 56
50 % 137 343 34
40 % 137 343 46
30 % 151 415 44
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 249 34
95 % 116 249 49
90 % 116 249 54
70 % 116 250 61
50 % 116 250 86
40 % 116 250 106
30 % 116 250 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 253 28
95 % 120 258 34
90 % 120 258 39
70 % 120 258 49
50 % 141 351 26
40 % 141 352 36
30 % 141 352 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 245 36
95 % 116 250 46
90 % 116 250 51
70 % 116 250 60
50 % 116 250 85
40 % 116 251 105
30 % 137 341 62
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 157 59
95 % 115 244 50
90 % 116 248 55
70 % 116 248 64
50 % 116 248 89
40 % 116 248 110
30 % 116 248 122
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 30 685
95 % 14 37 685
90 % 14 37 722
70 % 14 37 767
50 % 14 37 832
40 % 14 37 867
30 % 14 37 855
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 253 27
95 % 117 253 37
90 % 117 253 43
70 % 117 253 52
50 % 135 341 33
40 % 135 341 44
30 % 135 341 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 250 29
95 % 116 251 39
90 % 116 251 45
70 % 116 251 54
50 % 134 337 36
40 % 134 338 47
30 % 134 338 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 198 47
95 % 116 249 47
90 % 116 249 52
70 % 116 249 62
50 % 116 249 88
40 % 116 249 108
30 % 116 249 121
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 240 40
95 % 116 240 56
90 % 116 240 60
70 % 116 240 69
50 % 116 240 93
40 % 116 240 116
30 % 116 240 130
Entity #22 | Chains: X
mRNA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
RNA-ASL rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 36 496
95 % 14 36 720
90 % 14 36 766
70 % 14 36 805
50 % 28 72 378
40 % 28 73 395
30 % 28 73 403
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 243 37
95 % 116 251 40
90 % 116 251 46
70 % 116 251 55
50 % 134 338 35
40 % 134 339 45
30 % 134 339 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 250 32
95 % 116 250 43
90 % 116 250 48
70 % 116 250 57
50 % 135 342 32
40 % 135 342 43
30 % 135 344 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 255 25
95 % 124 261 33
90 % 124 261 37
70 % 124 261 48
50 % 124 261 84
40 % 124 261 102
30 % 140 300 79
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 254 26
95 % 117 255 36
90 % 117 255 41
70 % 117 255 50
50 % 135 300 51
40 % 135 301 64
30 % 135 301 89
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 250 30
95 % 116 250 41
90 % 117 254 42
70 % 117 254 51
50 % 137 344 30
40 % 138 346 40
30 % 153 419 35
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 91 192
95 % 116 250 45
90 % 116 250 50
70 % 116 250 59
50 % 134 338 38
40 % 134 338 48
30 % 148 410 45

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.