Sequence Similarity Clusters for the Entities in PDB 4K0K

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 269 39
95 % 123 270 53
90 % 123 270 58
70 % 123 270 68
50 % 154 421 26
40 % 154 421 38
30 % 171 528 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 271 35
95 % 123 271 49
90 % 123 271 54
70 % 123 271 64
50 % 148 415 32
40 % 167 537 19
30 % 167 537 31
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 217 51
95 % 123 278 39
90 % 123 278 44
70 % 148 422 19
50 % 148 432 24
40 % 148 432 35
30 % 148 432 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 272 33
95 % 123 272 46
90 % 123 272 51
70 % 123 272 62
50 % 151 419 31
40 % 151 419 43
30 % 168 527 36
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 270 36
95 % 123 270 54
90 % 123 270 59
70 % 123 279 54
50 % 123 279 90
40 % 123 279 113
30 % 123 279 123
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 274 30
95 % 127 279 38
90 % 127 279 43
70 % 127 279 53
50 % 155 428 25
40 % 155 433 34
30 % 155 433 54
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 266 41
95 % 123 271 51
90 % 123 271 56
70 % 123 271 66
50 % 123 278 91
40 % 123 278 114
30 % 151 413 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 178 58
95 % 122 265 56
90 % 123 269 60
70 % 123 269 69
50 % 123 269 94
40 % 123 269 117
30 % 123 269 128
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 30 807
95 % 14 37 861
90 % 14 37 892
70 % 14 37 927
50 % 14 37 983
40 % 14 37 1006
30 % 14 37 977
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 274 29
95 % 124 274 42
90 % 124 274 48
70 % 124 274 58
50 % 149 421 28
40 % 149 424 40
30 % 149 424 57
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 271 31
95 % 123 272 43
90 % 123 272 49
70 % 123 272 59
50 % 148 409 36
40 % 148 414 45
30 % 148 414 62
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 219 50
95 % 123 270 52
90 % 123 270 57
70 % 123 270 67
50 % 123 270 93
40 % 123 270 116
30 % 123 270 127
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 261 43
95 % 123 261 59
90 % 123 261 63
70 % 123 261 74
50 % 123 261 98
40 % 123 261 121
30 % 123 261 133
Entity #22 | Chains: X
mRNA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
RNA-ASL rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 36 660
95 % 14 36 896
90 % 14 36 930
70 % 14 36 962
50 % 35 100 345
40 % 35 105 347
30 % 35 105 355
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 264 42
95 % 123 272 44
90 % 123 272 50
70 % 123 272 60
50 % 148 416 29
40 % 148 421 41
30 % 148 421 58
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 271 34
95 % 123 271 48
90 % 123 271 53
70 % 123 271 63
50 % 149 417 30
40 % 149 417 42
30 % 149 419 60
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 125 276 27
95 % 131 282 37
90 % 131 282 42
70 % 131 282 51
50 % 131 282 88
40 % 131 282 110
30 % 154 355 95
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 275 28
95 % 124 276 41
90 % 124 276 46
70 % 124 276 56
50 % 149 356 66
40 % 149 361 84
30 % 149 361 96
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 271 32
95 % 123 271 45
90 % 124 275 47
70 % 124 275 57
50 % 151 421 27
40 % 152 427 37
30 % 171 542 30
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 91 220
95 % 123 271 50
90 % 123 271 55
70 % 123 271 65
50 % 148 411 35
40 % 148 411 48
30 % 165 526 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.