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Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon
Sequence Clustering and Redundancy Reduction Results
4K0K
Sequence Clusters for the Sequence Entities in PDB 4K0K
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1517 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 194 28
95% 82 195 46
90% 82 195 48
70% 82 195 59
50% 104 276 35
40% 104 276 45
30% 118 326 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 196 26
95% 82 196 42
90% 82 196 44
70% 82 196 55
50% 98 270 42
40% 114 325 36
30% 114 325 47
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 165 35
95% 82 203 31
90% 82 203 33
70% 98 282 24
50% 98 282 34
40% 98 282 44
30% 98 282 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 121 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 197 23
95% 82 197 38
90% 82 197 40
70% 82 197 52
50% 101 275 39
40% 101 275 51
30% 115 326 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 195 27
95% 82 195 47
90% 82 195 49
70% 82 195 60
50% 82 195 92
40% 82 195 116
30% 82 195 139
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 199 19
95% 86 204 30
90% 86 204 32
70% 86 204 44
50% 105 283 33
40% 105 283 43
30% 105 283 68
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 191 29
95% 82 196 44
90% 82 196 46
70% 82 196 57
50% 82 196 89
40% 82 196 114
30% 101 273 77
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 110 66
95% 81 190 49
90% 82 194 50
70% 82 194 61
50% 82 194 93
40% 82 194 117
30% 82 194 141
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 20 961
95% 7 26 961
90% 7 26 979
70% 7 26 1008
50% 7 26 1048
40% 7 26 1072
30% 7 26 1051
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 79 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 25 707
95% 7 25 984
90% 7 25 1002
70% 7 25 1028
50% 99 273 38
40% 99 273 49
30% 99 273 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 196 24
95% 82 197 35
90% 82 197 38
70% 82 197 50
50% 82 197 88
40% 98 270 53
30% 98 270 76
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 146 54
95% 82 195 45
90% 82 195 47
70% 82 195 58
50% 82 195 91
40% 82 195 115
30% 82 195 138
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 186 32
95% 82 186 51
90% 82 186 54
70% 82 186 66
50% 82 186 110
40% 82 186 133
30% 82 186 151
Entity #22: Chains: X - mRNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - RNA-ASL rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 24 739
95% 7 24 1030
90% 7 24 1046
70% 7 24 1068
50% 20 58 417
40% 20 59 434
30% 20 59 447
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 189 30
95% 82 197 36
90% 82 197 39
70% 82 197 51
50% 98 270 40
40% 98 271 52
30% 98 271 75
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 196 25
95% 82 196 40
90% 82 196 42
70% 82 196 54
50% 99 274 37
40% 99 274 48
30% 99 276 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 201 17
95% 90 207 29
90% 90 207 31
70% 90 207 42
50% 90 207 81
40% 90 207 108
30% 105 244 90
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 200 18
95% 83 201 33
90% 83 201 35
70% 83 201 46
50% 100 242 55
40% 100 243 71
30% 100 243 95
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 196 22
95% 82 196 37
90% 83 200 36
70% 83 200 47
50% 101 276 36
40% 102 278 46
30% 117 330 45
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 90 140
95% 82 196 43
90% 82 196 45
70% 82 196 56
50% 98 270 41
40% 98 270 54
30% 112 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.