Sequence Similarity Clusters for the Entities in PDB 4K0K

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 267 40
95 % 121 268 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 121 268 58
70 % 121 268 69
50 % 152 412 26
40 % 152 412 37
30 % 168 514 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 269 37
95 % 121 269 50 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 121 269 54
70 % 121 269 64
50 % 146 406 33
40 % 164 514 19
30 % 164 514 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 75 217 50
95 % 121 276 40 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 121 276 45
70 % 146 415 20
50 % 146 423 24
40 % 146 423 35
30 % 146 423 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 270 35
95 % 121 270 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 121 270 52
70 % 121 270 62
50 % 149 410 32
40 % 149 410 44
30 % 165 512 36
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 268 38
95 % 121 268 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 121 268 59
70 % 121 272 59
50 % 121 272 91
40 % 121 272 112
30 % 121 272 125
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 272 30
95 % 125 277 39 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 125 277 44
70 % 125 277 55
50 % 153 419 25
40 % 153 424 34
30 % 153 424 53
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 264 41
95 % 121 269 52 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 121 269 56
70 % 121 269 66
50 % 121 274 90
40 % 121 274 111
30 % 149 407 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 90 176 58
95 % 120 263 57 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 121 267 60
70 % 121 267 70
50 % 121 267 94
40 % 121 267 115
30 % 121 267 127
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 30 787
95 % 14 37 844 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 14 37 876
70 % 14 37 911
50 % 14 37 964
40 % 14 37 984
30 % 14 37 960
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 122 272 29
95 % 122 272 43 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 122 272 49
70 % 122 272 58
50 % 147 412 29
40 % 147 415 38
30 % 147 415 57
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 269 33
95 % 121 270 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.7
PDBFlex
90 % 121 270 50
70 % 121 270 60
50 % 146 401 36
40 % 146 406 43
30 % 146 406 62
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 109 217 51
95 % 121 268 53 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 121 268 57
70 % 121 268 68
50 % 121 268 93
40 % 121 268 114
30 % 121 268 126
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 259 43
95 % 121 259 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 121 259 63
70 % 121 259 75
50 % 121 259 98
40 % 121 259 120
30 % 121 259 131
Entity #22 | Chains: X
mRNA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
RNA-ASL rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 36 646
95 % 14 36 876 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 14 36 909
70 % 14 36 941
50 % 35 97 326
40 % 35 102 336
30 % 35 102 346
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 262 42
95 % 121 270 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 121 270 51
70 % 121 270 61
50 % 146 407 31
40 % 146 412 39
30 % 146 412 58
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 269 36
95 % 121 269 49 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 121 269 53
70 % 121 269 63
50 % 147 411 30
40 % 147 411 42
30 % 147 413 59
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 123 274 27
95 % 129 280 37 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 129 280 41
70 % 129 280 52
50 % 129 280 87
40 % 129 280 106
30 % 152 347 92
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 122 273 28
95 % 122 274 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 122 274 46
70 % 122 274 56
50 % 147 347 68
40 % 147 352 83
30 % 147 352 95
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 269 34
95 % 121 269 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 122 273 47
70 % 122 273 57
50 % 149 412 27
40 % 150 418 36
30 % 168 527 30
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 91 215
95 % 121 269 51 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 121 269 55
70 % 121 269 65
50 % 146 405 34
40 % 146 405 45
30 % 162 511 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.