Sequence Similarity Clusters for the Entities in PDB 4K0K

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 292 40
95 % 136 292 49 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 136 292 54
70 % 136 292 65
50 % 167 462 25
40 % 185 577 20
30 % 185 579 33
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 293 38
95 % 136 293 46 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 136 293 50
70 % 136 293 63
50 % 161 456 32
40 % 181 583 19
30 % 181 583 32
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 114 261 49
95 % 136 300 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 136 300 41
70 % 161 470 15
50 % 161 473 24
40 % 161 473 39
30 % 161 473 57
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 294 35
95 % 136 294 42 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 136 294 47
70 % 136 294 60
50 % 164 460 30
40 % 164 460 43
30 % 182 580 37
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 292 39
95 % 136 292 48 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 136 292 53
70 % 136 296 56
50 % 136 305 91
40 % 136 305 112
30 % 136 305 127
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 298 28
95 % 140 301 36
90 % 140 301 40
70 % 140 301 51
50 % 168 468 26
40 % 168 473 38
30 % 168 473 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 136 288 43
95 % 136 293 44
90 % 136 293 48
70 % 136 293 61
50 % 136 303 92
40 % 164 458 45
30 % 164 458 61
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 126 264 46
95 % 136 290 51 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 136 290 56
70 % 136 290 68
50 % 136 290 97
40 % 136 290 119
30 % 136 290 133
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 48 561
95 % 19 48 696 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 19 48 723
70 % 19 48 768
50 % 19 48 832
40 % 19 48 864
30 % 19 48 857
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 296 31
95 % 137 296 39
90 % 137 296 44
70 % 137 296 55
50 % 162 462 28
40 % 162 465 41
30 % 162 465 58
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 293 34
95 % 136 294 41 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 136 294 46
70 % 136 294 59
50 % 161 446 36
40 % 161 452 48
30 % 161 452 64
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 39 772
95 % 136 292 50 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 136 292 55
70 % 136 292 66
50 % 136 292 94
40 % 136 292 117
30 % 136 292 132
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 283 45
95 % 136 283 55 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 136 283 60
70 % 136 283 72
50 % 136 283 100
40 % 136 283 123
30 % 136 283 135
Entity #22 | Chains: X
mRNA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
RNA-ASL rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 47 598
95 % 19 47 733
90 % 19 47 758
70 % 19 47 807
50 % 40 127 295
40 % 40 133 306
30 % 40 133 320
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 294 33
95 % 136 294 40 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 136 294 45
70 % 136 294 57
50 % 161 456 29
40 % 161 462 42
30 % 161 462 59
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 293 37
95 % 136 293 45 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 136 293 49
70 % 136 293 62
50 % 162 457 31
40 % 162 457 44
30 % 162 459 60
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 138 298 29
95 % 144 304 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 144 304 39
70 % 144 304 50
50 % 144 304 90
40 % 144 304 111
30 % 167 393 86
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 137 298 30
95 % 137 298 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 137 298 42
70 % 137 298 53
50 % 162 395 58
40 % 162 401 67
30 % 162 401 83
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 293 36
95 % 136 293 43 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 137 297 43
70 % 137 297 54
50 % 164 461 27
40 % 185 596 18
30 % 185 596 31
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 94 239
95 % 136 293 47 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 136 293 51
70 % 136 293 64
50 % 161 450 35
40 % 161 451 49
30 % 179 580 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures