Sequence Similarity Clusters for the Entities in PDB 4K0K

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 253 35
95 % 120 254 48
90 % 120 254 53
70 % 120 254 63
50 % 151 359 28
40 % 151 359 38
30 % 166 432 35
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 255 33
95 % 120 255 43
90 % 120 255 48
70 % 120 255 57
50 % 145 353 35
40 % 162 434 20
30 % 162 435 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 207 46
95 % 120 262 35
90 % 120 262 40
70 % 145 364 22
50 % 145 365 27
40 % 145 365 37
30 % 145 365 56
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 256 31
95 % 120 256 41
90 % 120 256 46
70 % 120 256 55
50 % 148 358 32
40 % 148 358 43
30 % 163 433 38
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 254 34
95 % 120 254 49
90 % 120 254 54
70 % 120 255 60
50 % 120 255 86
40 % 120 255 107
30 % 120 255 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 258 27
95 % 124 263 34
90 % 124 263 39
70 % 124 263 49
50 % 152 366 26
40 % 152 367 36
30 % 152 367 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 250 36
95 % 120 255 45
90 % 120 255 50
70 % 120 255 59
50 % 120 255 85
40 % 120 256 106
30 % 148 356 61
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 162 57
95 % 119 249 51
90 % 120 253 55
70 % 120 253 64
50 % 120 253 88
40 % 120 253 109
30 % 120 253 123
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 30 695
95 % 14 37 718
90 % 14 37 760
70 % 14 37 804
50 % 14 37 849
40 % 14 37 882
30 % 14 37 873
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 258 26
95 % 121 258 37
90 % 121 258 43
70 % 121 258 52
50 % 146 356 31
40 % 146 356 41
30 % 146 356 58
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 255 28
95 % 120 256 38
90 % 120 256 44
70 % 120 256 53
50 % 145 352 34
40 % 145 353 44
30 % 145 353 60
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 203 47
95 % 120 254 47
90 % 120 254 52
70 % 120 254 62
50 % 120 254 87
40 % 120 254 108
30 % 120 254 121
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 245 38
95 % 120 245 53
90 % 120 245 58
70 % 120 245 68
50 % 120 245 93
40 % 120 245 117
30 % 120 245 131
Entity #22 | Chains: X
mRNA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
RNA-ASL rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 36 535
95 % 14 36 753
90 % 14 36 793
70 % 14 36 836
50 % 35 79 336
40 % 35 80 360
30 % 35 80 374
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 248 37
95 % 120 256 39
90 % 120 256 45
70 % 120 256 54
50 % 145 353 33
40 % 145 354 42
30 % 145 354 59
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 255 32
95 % 120 255 42
90 % 120 255 47
70 % 120 255 56
50 % 146 357 30
40 % 146 357 40
30 % 146 359 57
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 260 24
95 % 128 266 33
90 % 128 266 36
70 % 128 266 45
50 % 128 266 83
40 % 128 266 102
30 % 151 312 77
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 259 25
95 % 121 260 36
90 % 121 260 41
70 % 121 260 50
50 % 146 312 52
40 % 146 313 64
30 % 146 313 85
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 255 30
95 % 120 255 40
90 % 121 259 42
70 % 121 259 51
50 % 148 359 29
40 % 149 361 39
30 % 165 438 32
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 91 197
95 % 120 255 44
90 % 120 255 49
70 % 120 255 58
50 % 145 353 36
40 % 145 353 45
30 % 160 429 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.