Sequence Similarity Clusters for the Entities in PDB 4K0K

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 267 37
95 % 121 268 50
90 % 121 268 53
70 % 121 268 64
50 % 152 385 26
40 % 152 385 37
30 % 168 475 29
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 269 35
95 % 121 269 46
90 % 121 269 49
70 % 121 269 58
50 % 146 379 35
40 % 164 469 19
30 % 164 470 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 217 47
95 % 121 276 35
90 % 121 276 39
70 % 146 390 21
50 % 146 391 25
40 % 146 391 36
30 % 146 391 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 270 33
95 % 121 270 43
90 % 121 270 47
70 % 121 270 56
50 % 149 384 31
40 % 149 384 43
30 % 165 476 35
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 268 36
95 % 121 268 51
90 % 121 268 54
70 % 121 269 61
50 % 121 269 87
40 % 121 269 107
30 % 121 269 117
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 272 28
95 % 125 277 34
90 % 125 277 38
70 % 125 277 49
50 % 153 392 23
40 % 153 393 35
30 % 153 393 53
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 264 38
95 % 121 269 48
90 % 121 269 51
70 % 121 269 60
50 % 121 269 86
40 % 121 270 106
30 % 149 382 62
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 176 54
95 % 120 263 52
90 % 121 267 55
70 % 121 267 65
50 % 121 267 90
40 % 121 267 109
30 % 121 267 119
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 30 730
95 % 14 37 775
90 % 14 37 806
70 % 14 37 853
50 % 14 37 898
40 % 14 37 922
30 % 14 37 915
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 272 27
95 % 122 272 39
90 % 122 272 44
70 % 122 272 53
50 % 147 382 30
40 % 147 382 41
30 % 147 382 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 269 31
95 % 121 270 40
90 % 121 270 45
70 % 121 270 54
50 % 146 378 34
40 % 146 379 44
30 % 146 379 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 217 48
95 % 121 268 49
90 % 121 268 52
70 % 121 268 63
50 % 121 268 89
40 % 121 268 108
30 % 121 268 118
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 259 41
95 % 121 259 54
90 % 121 259 58
70 % 121 259 68
50 % 121 259 93
40 % 121 259 115
30 % 121 259 128
Entity #22 | Chains: X
mRNA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
RNA-ASL rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 36 588
95 % 14 36 806
90 % 14 36 840
70 % 14 36 882
50 % 35 85 333
40 % 35 86 358
30 % 35 86 364
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 262 39
95 % 121 270 41
90 % 121 270 46
70 % 121 270 55
50 % 146 379 32
40 % 146 380 42
30 % 146 380 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 269 34
95 % 121 269 45
90 % 121 269 48
70 % 121 269 57
50 % 147 383 29
40 % 147 383 40
30 % 147 385 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 274 24
95 % 129 280 32
90 % 129 280 37
70 % 129 280 48
50 % 129 280 83
40 % 129 280 102
30 % 152 332 78
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 273 26
95 % 122 274 36
90 % 122 274 40
70 % 122 274 50
50 % 147 332 59
40 % 147 333 72
30 % 147 333 87
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 269 32
95 % 121 269 42
90 % 122 273 41
70 % 122 273 51
50 % 149 385 28
40 % 150 387 38
30 % 168 482 28
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 91 200
95 % 121 269 47
90 % 121 269 50
70 % 121 269 59
50 % 146 379 36
40 % 146 379 45
30 % 162 472 37

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.