Sequence Similarity Clusters for the Entities in PDB 4JZZ

Entity #1 | Chains: A
HIV-1 YU2 gp120 glycoprotein protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 4358
95 % 1 8 5150 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 1 8 5193
70 % 1 101 311
50 % 1 101 368
40 % 1 101 386
30 % 1 102 394
Entity #2 | Chains: R
CD4-MIMETIC MINIPROTEIN M48U1 protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 2530
95 % 1 14 2300 Flexibility: No
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 1 14 2371
70 % 1 16 2056
50 % 1 16 2098
40 % 1 16 2133
30 % 1 16 2148

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures