Sequence Similarity Clusters for the Entities in PDB 4JYZ

Entity #1 | Chains: A
Glutamine--tRNA ligase protein, length: 553 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 14 3906
95 % 8 19 3338 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.7
PDBFlex
90 % 8 19 3383
70 % 8 19 3342
50 % 9 21 2794
40 % 9 21 2742
30 % 9 21 2577
Entity #2 | Chains: B
RNA (72-MER) rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5BNZ 1 A, B Glutamine--tRNA ligase PsaeA.18222.a.B1 287 6.1.1.18 | Details
2 4JXX 1 A Glutamine--tRNA ligase 562 6.1.1.18 | Details
3 1QTQ 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE) 562 6.1.1.18 | Details
4 1GTR 2 A GLUTAMINYL-tRNA SYNTHETASE 562 6.1.1.18 | Details
5 4JXZ 1 A Glutamine--tRNA ligase 562 6.1.1.18 | Details
6 1ZJW 2 A Glutaminyl-tRNA synthetase 562 6.1.1.18 | Details
7 1QRS 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562 6.1.1.18 | Details
8 2RD2 2 A Glutaminyl-tRNA synthetase 562 6.1.1.18 | Details
9 4JYZ 1 A Glutamine--tRNA ligase 562 6.1.1.18 | Details
10 2RE8 2 A Glutaminyl-tRNA synthetase 562 6.1.1.18 | Details
11 1GTS 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562 6.1.1.18 | Details
12 1O0C 2 A Glutaminyl-tRNA synthetase complexed with AMPCPP, see REMARK 600 562 6.1.1.18 | Details
13 1EXD 2 A GLUTAMINYL-TRNA SYNTHETASE 562 6.1.1.18 | Details
14 1QRT 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562 6.1.1.18 | Details
15 1O0B 2 A Glutaminyl-tRNA synthetase complexed with AMPCPP, see REMARK 600 562 6.1.1.18 | Details
16 1EUY 2 A GLUTAMINYL-TRNA SYNTHETASE 562 6.1.1.18 | Details
17 1NYL 1 A Glutaminyl-tRNA synthetase 562 6.1.1.18 | Details
18 4P2B 1 A Glutamine aminoacyl-tRNA synthetase Database gene sequence was optimized for codon usage before synthesis. UNP residues 332-886 5811
19 1QRU 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562 6.1.1.18 | Details
20 1EUQ 2 A GLUTAMINYL-TRNA SYNTHETASE 562 6.1.1.18 | Details
21 1GSG 2 P GLUTAMINYL-TRNA SYNTHETASE 562 6.1.1.18 | Details