Sequence Similarity Clusters for the Entities in PDB 4JYZ

Entity #1 | Chains: A
Glutamine--tRNA ligase protein, length: 553 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 16 4134
95 % 8 19 3632 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.7
PDBFlex
90 % 8 19 3689
70 % 8 19 3637
50 % 11 24 2634
40 % 11 24 2585
30 % 11 24 2418
Entity #2 | Chains: B
RNA (72-MER) rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5BNZ 1 A, B Glutamine--tRNA ligase PsaeA.18222.a.B1 287 6.1.1.18 | Details
2 5ZDK 1 A Glutamine--tRNA ligase Native 274 6.1.1.18 | Details
3 4JXX 1 A Glutamine--tRNA ligase 562 6.1.1.18 | Details
4 1QTQ 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE) 562 6.1.1.18 | Details
5 1GTR 2 A GLUTAMINYL-tRNA SYNTHETASE 562 6.1.1.18 | Details
6 4JXZ 1 A Glutamine--tRNA ligase 562 6.1.1.18 | Details
7 1ZJW 2 A Glutaminyl-tRNA synthetase 562 6.1.1.18 | Details
8 1QRS 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562 6.1.1.18 | Details
9 2RD2 2 A Glutaminyl-tRNA synthetase 562 6.1.1.18 | Details
10 5ZDO 1 A Glutamine-tRNA ligase 274 6.1.1.18 | Details
11 4JYZ 1 A Glutamine--tRNA ligase 562 6.1.1.18 | Details
12 2RE8 2 A Glutaminyl-tRNA synthetase 562 6.1.1.18 | Details
13 1GTS 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562 6.1.1.18 | Details
14 5ZDL 1 A Glutamine--tRNA ligase 274 6.1.1.18 | Details
15 1O0C 2 A Glutaminyl-tRNA synthetase complexed with AMPCPP, see REMARK 600 562 6.1.1.18 | Details
16 1EXD 2 A GLUTAMINYL-TRNA SYNTHETASE 562 6.1.1.18 | Details
17 1QRT 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562 6.1.1.18 | Details
18 1O0B 2 A Glutaminyl-tRNA synthetase complexed with AMPCPP, see REMARK 600 562 6.1.1.18 | Details
19 1EUY 2 A GLUTAMINYL-TRNA SYNTHETASE 562 6.1.1.18 | Details
20 1NYL 1 A Glutaminyl-tRNA synthetase 562 6.1.1.18 | Details
21 4P2B 1 A Glutamine aminoacyl-tRNA synthetase Database gene sequence was optimized for codon usage before synthesis. UNP residues 332-886 5811
22 1QRU 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562 6.1.1.18 | Details
23 1EUQ 2 A GLUTAMINYL-TRNA SYNTHETASE 562 6.1.1.18 | Details
24 1GSG 2 P GLUTAMINYL-TRNA SYNTHETASE 562 6.1.1.18 | Details