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Crystal structure of E. coli glutaminyl-tRNA synthetase bound to ATP and native tRNA(Gln) containing the cmnm5s2U34 anticodon wobble base
Sequence Clustering and Redundancy Reduction Results
4JYZ
Cluster # 2249 Members. Sequence cutoff: 30% Cluster size: 19 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4JXX 1 A Glutamine--tRNA ligase 83333   6.1.1.18   
2 1QTQ 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE) 562   6.1.1.18   
3 1GTR 2 A GLUTAMINYL-tRNA SYNTHETASE 562   6.1.1.18   
4 4JXZ 1 A Glutamine--tRNA ligase 83333   6.1.1.18   
5 1ZJW 2 A Glutaminyl-tRNA synthetase 562   6.1.1.18   
6 1QRS 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562   6.1.1.18   
7 2RD2 2 A Glutaminyl-tRNA synthetase 83333   6.1.1.18   
8 4JYZ 1 A Glutamine--tRNA ligase 83333   6.1.1.18   
9 2RE8 2 A Glutaminyl-tRNA synthetase 562   6.1.1.18   
10 1GTS 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562   6.1.1.18   
11 1O0C 2 A Glutaminyl-tRNA synthetase complexed with AMPCPP, see REMARK 600 562   6.1.1.18   
12 1EXD 2 A GLUTAMINYL-TRNA SYNTHETASE 562   6.1.1.18   
13 1QRT 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562   6.1.1.18   
14 1O0B 2 A Glutaminyl-tRNA synthetase complexed with AMPCPP, see REMARK 600 562   6.1.1.18   
15 1EUY 2 A GLUTAMINYL-TRNA SYNTHETASE 562   6.1.1.18   
16 1NYL 1 A Glutaminyl-tRNA synthetase 562   6.1.1.18   
17 1QRU 2 A PROTEIN (GLUTAMINYL-TRNA SYNTHETASE (E.C.6.1.1.18)) 562   6.1.1.18   
18 1EUQ 2 A GLUTAMINYL-TRNA SYNTHETASE 562   6.1.1.18   
19 1GSG 2 P GLUTAMINYL-TRNA SYNTHETASE 562   6.1.1.18   
 
Sequence Clusters for the Sequence Entities in PDB 4JYZ
Entity #1: Chains: A - Glutamine--tRNA ligase protein, length: 553 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 14 2719
95% 8 19 2389
90% 8 19 2415
70% 8 19 2434
50% 8 19 2428
40% 8 19 2407
30% 8 19 2249
Entity #2: Chains: B - RNA (72-MER) rna, length: 75 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.