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Crystal structures of pseudouridinilated stop codons with ASLs
Sequence Clustering and Redundancy Reduction Results
4JYA
Sequence Clusters for the Sequence Entities in PDB 4JYA
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1516 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 252 29
95% 15 254 48
90% 15 254 51
70% 15 254 63
50% 23 369 34
40% 23 369 47
30% 23 374 66
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 255 27
95% 15 255 44
90% 15 255 47
70% 15 255 59
50% 17 363 42
40% 21 403 39
30% 21 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 224 37
95% 15 262 36
90% 15 262 38
70% 17 375 24
50% 17 375 33
40% 17 375 46
30% 17 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 256 24
95% 15 256 42
90% 15 256 45
70% 15 256 57
50% 17 365 39
40% 17 365 53
30% 19 401 55
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 254 28
95% 15 254 49
90% 15 254 52
70% 15 254 64
50% 15 254 97
40% 15 254 122
30% 15 254 144
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 258 21
95% 16 263 35
90% 16 263 37
70% 16 263 48
50% 21 376 32
40% 21 376 44
30% 21 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 250 30
95% 15 255 46
90% 15 255 49
70% 15 255 61
50% 15 255 95
40% 15 255 120
30% 17 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 157 62
95% 15 249 51
90% 15 253 53
70% 15 253 65
50% 15 253 98
40% 15 253 124
30% 15 253 146
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 26 1125
95% 1 36 1039
90% 1 36 1062
70% 1 36 1091
50% 1 36 1156
40% 1 36 1188
30% 1 36 1176
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 35 738
95% 1 35 1069
90% 1 35 1091
70% 1 35 1129
50% 18 366 38
40% 18 366 52
30% 18 366 74
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 255 25
95% 15 256 39
90% 15 256 43
70% 15 256 55
50% 15 256 94
40% 17 363 55
30% 17 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 193 43
95% 15 254 47
90% 15 254 50
70% 15 254 62
50% 15 254 96
40% 15 254 121
30% 15 254 143
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 238 34
95% 15 238 55
90% 15 238 59
70% 15 238 71
50% 15 238 110
40% 15 238 133
30% 15 238 153
Entity #22: Chains: X - mRNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ASL-tRNA rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 35 731
95% 1 35 1062
90% 1 35 1084
70% 1 35 1118
50% 3 79 445
40% 3 80 463
30% 3 80 482
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 248 32
95% 15 256 40
90% 15 256 44
70% 15 256 56
50% 17 363 40
40% 17 364 54
30% 17 364 75
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 255 26
95% 15 255 43
90% 15 255 46
70% 15 255 58
50% 17 367 37
40% 17 367 51
30% 17 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 260 18
95% 22 266 34
90% 22 266 36
70% 22 266 47
50% 22 266 88
40% 22 266 110
30% 26 313 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 259 20
95% 16 260 37
90% 16 260 39
70% 16 260 50
50% 19 308 57
40% 19 309 73
30% 19 309 97
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 255 23
95% 16 255 41
90% 16 259 40
70% 16 259 52
50% 19 369 36
40% 20 371 48
30% 23 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 113 133
95% 15 255 45
90% 15 255 48
70% 15 255 60
50% 17 363 41
40% 17 363 56
30% 19 399 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.