Sequence Similarity Clusters for the Entities in PDB 4JYA

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1516 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 267 38
95 % 33 268 54
90 % 33 268 57
70 % 33 268 69
50 % 46 399 26
40 % 46 399 37
30 % 49 498 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 269 36
95 % 33 269 50
90 % 33 269 53
70 % 33 269 64
50 % 40 392 35
40 % 45 497 19
30 % 45 497 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 217 50
95 % 33 276 40
90 % 33 276 44
70 % 40 405 22
50 % 40 410 25
40 % 40 410 35
30 % 40 410 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 270 34
95 % 33 270 47
90 % 33 270 51
70 % 33 270 61
50 % 40 397 33
40 % 40 397 46
30 % 43 498 36
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 268 37
95 % 33 268 55
90 % 33 268 58
70 % 33 270 62
50 % 33 270 90
40 % 33 270 112
30 % 33 270 123
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 272 30
95 % 34 277 39
90 % 34 277 43
70 % 34 277 55
50 % 44 405 27
40 % 44 408 36
30 % 44 408 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 264 39
95 % 33 269 52
90 % 33 269 55
70 % 33 269 66
50 % 33 271 89
40 % 33 271 110
30 % 40 393 64
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 176 58
95 % 33 263 56
90 % 33 267 59
70 % 33 267 70
50 % 33 267 94
40 % 33 267 115
30 % 33 267 127
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 30 773
95 % 3 37 834
90 % 3 37 864
70 % 3 37 900
50 % 3 37 947
40 % 3 37 966
30 % 3 37 946
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 272 29
95 % 34 272 43
90 % 34 272 48
70 % 34 272 58
50 % 41 397 30
40 % 41 400 41
30 % 41 400 58
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 269 32
95 % 33 270 44
90 % 33 270 49
70 % 33 270 59
50 % 40 391 34
40 % 40 394 45
30 % 40 394 62
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 217 51
95 % 33 268 53
90 % 33 268 56
70 % 33 268 68
50 % 33 268 92
40 % 33 268 113
30 % 33 268 124
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 259 43
95 % 33 259 59
90 % 33 259 63
70 % 33 259 75
50 % 33 259 97
40 % 33 259 120
30 % 33 259 130
Entity #22 | Chains: X
mRNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ASL-tRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 36 641
95 % 3 36 868
90 % 3 36 900
70 % 3 36 929
50 % 9 87 372
40 % 9 90 382
30 % 9 90 383
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 262 40
95 % 33 270 45
90 % 33 270 50
70 % 33 270 60
50 % 40 393 32
40 % 40 396 43
30 % 40 396 61
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 269 35
95 % 33 269 49
90 % 33 269 52
70 % 33 269 63
50 % 40 397 31
40 % 40 397 44
30 % 40 399 59
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 274 27
95 % 40 280 36
90 % 40 280 41
70 % 40 280 52
50 % 40 280 87
40 % 40 280 106
30 % 48 334 90
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 273 28
95 % 34 274 41
90 % 34 274 45
70 % 34 274 56
50 % 41 338 71
40 % 41 341 79
30 % 41 341 93
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 269 33
95 % 34 269 46
90 % 34 273 46
70 % 34 273 57
50 % 42 398 29
40 % 43 402 38
30 % 47 510 30
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 211
95 % 33 269 51
90 % 33 269 54
70 % 33 269 65
50 % 40 392 36
40 % 40 392 47
30 % 43 497 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.