Sequence Similarity Clusters for the Entities in PDB 4JYA

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1516 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 253 36
95 % 33 254 49
90 % 33 254 54
70 % 33 254 64
50 % 46 361 28
40 % 46 361 38
30 % 49 434 36
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 255 34
95 % 33 255 45
90 % 33 255 50
70 % 33 255 59
50 % 40 355 35
40 % 45 436 20
30 % 45 437 34
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 207 47
95 % 33 262 36
90 % 33 262 41
70 % 40 366 21
50 % 40 367 27
40 % 40 367 37
30 % 40 367 57
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 256 32
95 % 33 256 43
90 % 33 256 48
70 % 33 256 57
50 % 40 360 32
40 % 40 360 44
30 % 43 435 39
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 254 35
95 % 33 254 50
90 % 33 254 55
70 % 33 255 62
50 % 33 255 87
40 % 33 255 108
30 % 33 255 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 258 29
95 % 34 263 35
90 % 34 263 40
70 % 34 263 50
50 % 44 368 26
40 % 44 369 36
30 % 44 369 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 250 37
95 % 33 255 47
90 % 33 255 52
70 % 33 255 61
50 % 33 255 86
40 % 33 256 107
30 % 40 358 62
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 162 59
95 % 33 249 52
90 % 33 253 56
70 % 33 253 65
50 % 33 253 89
40 % 33 253 111
30 % 33 253 124
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 30 698
95 % 3 37 723
90 % 3 37 765
70 % 3 37 810
50 % 3 37 854
40 % 3 37 887
30 % 3 37 879
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 258 28
95 % 34 258 38
90 % 34 258 44
70 % 34 258 53
50 % 41 358 31
40 % 41 358 41
30 % 41 358 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 255 30
95 % 33 256 40
90 % 33 256 46
70 % 33 256 55
50 % 40 354 34
40 % 40 355 45
30 % 40 355 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 203 48
95 % 33 254 48
90 % 33 254 53
70 % 33 254 63
50 % 33 254 88
40 % 33 254 109
30 % 33 254 121
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 245 39
95 % 33 245 55
90 % 33 245 60
70 % 33 245 70
50 % 33 245 94
40 % 33 245 118
30 % 33 245 131
Entity #22 | Chains: X
mRNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ASL-tRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 36 539
95 % 3 36 757
90 % 3 36 797
70 % 3 36 840
50 % 9 79 339
40 % 9 80 366
30 % 9 80 376
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 248 38
95 % 33 256 41
90 % 33 256 47
70 % 33 256 56
50 % 40 355 33
40 % 40 356 43
30 % 40 356 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 255 33
95 % 33 255 44
90 % 33 255 49
70 % 33 255 58
50 % 40 359 30
40 % 40 359 40
30 % 40 361 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 260 25
95 % 40 266 34
90 % 40 266 37
70 % 40 266 46
50 % 40 266 84
40 % 40 266 103
30 % 48 312 79
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 259 27
95 % 34 260 37
90 % 34 260 42
70 % 34 260 51
50 % 41 312 54
40 % 41 313 68
30 % 41 313 88
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 255 31
95 % 34 255 42
90 % 34 259 43
70 % 34 259 52
50 % 42 361 29
40 % 43 363 39
30 % 47 440 33
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 198
95 % 33 255 46
90 % 33 255 51
70 % 33 255 60
50 % 40 355 36
40 % 40 355 46
30 % 43 431 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.