Sequence Similarity Clusters for the Entities in PDB 4JYA

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1516 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 267 37
95 % 33 268 52
90 % 33 268 55
70 % 33 268 67
50 % 46 397 25
40 % 46 397 36
30 % 49 496 31
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 269 35
95 % 33 269 48
90 % 33 269 51
70 % 33 269 62
50 % 40 391 33
40 % 45 493 18
30 % 45 493 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 217 48
95 % 33 276 37
90 % 33 276 41
70 % 40 404 20
50 % 40 409 23
40 % 40 409 33
30 % 40 409 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 270 33
95 % 33 270 45
90 % 33 270 49
70 % 33 270 59
50 % 40 396 31
40 % 40 396 44
30 % 43 497 34
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 268 36
95 % 33 268 53
90 % 33 268 56
70 % 33 270 60
50 % 33 270 89
40 % 33 270 111
30 % 33 270 123
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 272 29
95 % 34 277 36
90 % 34 277 40
70 % 34 277 51
50 % 44 404 24
40 % 44 407 34
30 % 44 407 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 264 38
95 % 33 269 50
90 % 33 269 53
70 % 33 269 64
50 % 33 271 88
40 % 33 271 109
30 % 40 392 64
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 176 56
95 % 33 263 54
90 % 33 267 57
70 % 33 267 68
50 % 33 267 93
40 % 33 267 114
30 % 33 267 127
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 30 767
95 % 3 37 829
90 % 3 37 858
70 % 3 37 895
50 % 3 37 940
40 % 3 37 960
30 % 3 37 944
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 272 28
95 % 34 272 41
90 % 34 272 46
70 % 34 272 56
50 % 41 396 27
40 % 41 399 38
30 % 41 399 57
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 269 31
95 % 33 270 42
90 % 33 270 47
70 % 33 270 57
50 % 40 390 32
40 % 40 393 43
30 % 40 393 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 217 49
95 % 33 268 51
90 % 33 268 54
70 % 33 268 66
50 % 33 268 91
40 % 33 268 112
30 % 33 268 124
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 259 42
95 % 33 259 57
90 % 33 259 61
70 % 33 259 73
50 % 33 259 96
40 % 33 259 119
30 % 33 259 130
Entity #22 | Chains: X
mRNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ASL-tRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 36 630
95 % 3 36 861
90 % 3 36 894
70 % 3 36 922
50 % 9 87 365
40 % 9 90 376
30 % 9 90 377
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 262 39
95 % 33 270 43
90 % 33 270 48
70 % 33 270 58
50 % 40 392 30
40 % 40 395 41
30 % 40 395 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 269 34
95 % 33 269 47
90 % 33 269 50
70 % 33 269 61
50 % 40 396 29
40 % 40 396 42
30 % 40 398 59
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 274 26
95 % 40 280 34
90 % 40 280 39
70 % 40 280 50
50 % 40 280 86
40 % 40 280 105
30 % 48 334 90
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 273 27
95 % 34 274 39
90 % 34 274 43
70 % 34 274 54
50 % 41 338 68
40 % 41 341 78
30 % 41 341 91
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 269 32
95 % 34 269 44
90 % 34 273 44
70 % 34 273 55
50 % 42 397 26
40 % 43 401 35
30 % 47 506 29
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 207
95 % 33 269 49
90 % 33 269 52
70 % 33 269 63
50 % 40 391 34
40 % 40 391 45
30 % 43 494 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.