Sequence Similarity Clusters for the Entities in PDB 4JYA

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1516 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 237 25
95 % 28 238 38
90 % 28 238 43
70 % 28 238 53
50 % 37 330 30
40 % 37 330 40
30 % 40 396 41
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 239 23
95 % 28 239 34
90 % 28 239 39
70 % 28 239 48
50 % 31 324 38
40 % 36 397 27
30 % 36 398 39
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 194 42
95 % 28 246 22
90 % 28 246 27
70 % 31 335 23
50 % 31 336 29
40 % 31 336 39
30 % 31 336 56
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 240 20
95 % 28 240 32
90 % 28 240 37
70 % 28 240 46
50 % 31 329 35
40 % 31 329 46
30 % 34 397 46
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 238 24
95 % 28 238 39
90 % 28 238 44
70 % 28 239 51
50 % 28 239 82
40 % 28 239 108
30 % 28 239 124
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 242 16
95 % 29 247 21
90 % 29 247 26
70 % 29 247 37
50 % 35 337 27
40 % 35 338 38
30 % 35 338 54
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 234 26
95 % 28 239 36
90 % 28 239 41
70 % 28 239 50
50 % 28 239 81
40 % 28 240 106
30 % 31 327 65
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 149 57
95 % 28 233 40
90 % 28 237 45
70 % 28 237 54
50 % 28 237 87
40 % 28 237 113
30 % 28 237 128
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 29 665
95 % 3 36 650
90 % 3 36 685
70 % 3 36 740
50 % 3 36 824
40 % 3 36 852
30 % 3 36 843
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 242 15
95 % 29 242 26
90 % 29 242 31
70 % 29 242 42
50 % 32 327 34
40 % 32 327 44
30 % 32 327 60
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 239 17
95 % 28 240 27
90 % 28 240 33
70 % 28 240 43
50 % 31 323 37
40 % 31 324 47
30 % 31 324 63
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 188 48
95 % 28 238 37
90 % 28 238 42
70 % 28 238 52
50 % 28 238 83
40 % 28 238 110
30 % 28 238 126
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 229 39
95 % 28 229 54
90 % 28 229 58
70 % 28 229 69
50 % 28 229 97
40 % 28 229 118
30 % 28 229 133
Entity #22 | Chains: X
mRNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ASL-tRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 35 473
95 % 3 35 690
90 % 3 35 726
70 % 3 35 773
50 % 5 71 370
40 % 5 72 396
30 % 5 72 406
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 232 27
95 % 28 240 28
90 % 28 240 34
70 % 28 240 44
50 % 31 324 36
40 % 31 325 45
30 % 31 325 62
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 239 22
95 % 28 239 33
90 % 28 239 38
70 % 28 239 47
50 % 31 328 33
40 % 31 328 43
30 % 31 330 59
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 244 13
95 % 35 250 20
90 % 35 250 25
70 % 35 250 35
50 % 35 250 70
40 % 35 250 94
30 % 39 289 80
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 243 14
95 % 29 244 25
90 % 29 244 29
70 % 29 244 40
50 % 32 289 50
40 % 32 290 62
30 % 32 290 83
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 239 19
95 % 29 239 31
90 % 29 243 30
70 % 29 243 41
50 % 33 330 31
40 % 34 332 41
30 % 38 401 37
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 90 190
95 % 28 239 35
90 % 28 239 40
70 % 28 239 49
50 % 31 324 39
40 % 31 324 49
30 % 34 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.