Sequence Similarity Clusters for the Entities in PDB 4JYA

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1516 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 252 35
95 % 33 253 47
90 % 33 253 52
70 % 33 253 62
50 % 42 348 28
40 % 42 348 38
30 % 45 419 36
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 254 33
95 % 33 254 43
90 % 33 254 48
70 % 33 254 57
50 % 36 342 36
40 % 41 420 22
30 % 41 421 35
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 206 44
95 % 33 261 35
90 % 33 261 39
70 % 36 353 23
50 % 36 354 27
40 % 36 354 37
30 % 36 354 56
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 255 30
95 % 33 255 41
90 % 33 255 46
70 % 33 255 55
50 % 36 347 33
40 % 36 347 45
30 % 39 420 41
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 253 34
95 % 33 253 48
90 % 33 253 53
70 % 33 254 60
50 % 33 254 86
40 % 33 254 106
30 % 33 254 118
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 257 27
95 % 34 262 34
90 % 34 262 38
70 % 34 262 49
50 % 40 355 26
40 % 40 356 36
30 % 40 356 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 249 36
95 % 33 254 45
90 % 33 254 50
70 % 33 254 59
50 % 33 254 85
40 % 33 255 105
30 % 36 345 62
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 161 57
95 % 33 248 50
90 % 33 252 54
70 % 33 252 63
50 % 33 252 88
40 % 33 252 108
30 % 33 252 120
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 30 690
95 % 3 37 696
90 % 3 37 739
70 % 3 37 784
50 % 3 37 835
40 % 3 37 870
30 % 3 37 861
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 257 26
95 % 34 257 37
90 % 34 257 43
70 % 34 257 52
50 % 37 345 31
40 % 37 345 42
30 % 37 345 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 254 28
95 % 33 255 38
90 % 33 255 44
70 % 33 255 53
50 % 36 341 35
40 % 36 342 46
30 % 36 342 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 202 47
95 % 33 253 46
90 % 33 253 51
70 % 33 253 61
50 % 33 253 87
40 % 33 253 107
30 % 33 253 119
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 244 38
95 % 33 244 54
90 % 33 244 57
70 % 33 244 68
50 % 33 244 92
40 % 33 244 114
30 % 33 244 127
Entity #22 | Chains: X
mRNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ASL-tRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 36 509
95 % 3 36 733
90 % 3 36 777
70 % 3 36 821
50 % 5 72 379
40 % 5 73 397
30 % 5 73 407
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 247 37
95 % 33 255 39
90 % 33 255 45
70 % 33 255 54
50 % 36 342 34
40 % 36 343 44
30 % 36 343 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 254 32
95 % 33 254 42
90 % 33 254 47
70 % 33 254 56
50 % 36 346 30
40 % 36 346 41
30 % 36 348 57
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 259 24
95 % 40 265 21
90 % 40 265 24
70 % 40 265 32
50 % 40 265 79
40 % 40 265 100
30 % 44 304 78
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 258 25
95 % 34 259 36
90 % 34 259 41
70 % 34 259 50
50 % 37 304 51
40 % 37 305 63
30 % 37 305 86
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 254 29
95 % 34 254 40
90 % 34 258 42
70 % 34 258 51
50 % 38 348 29
40 % 39 350 39
30 % 43 424 34
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 91 192
95 % 33 254 44
90 % 33 254 49
70 % 33 254 58
50 % 36 342 37
40 % 36 342 47
30 % 39 415 43

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.