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An Information Portal to 109093 Biological Macromolecular Structures

Crystal structures of pseudouridinilated stop codons with ASLs
Sequence Clustering and Redundancy Reduction Results
4JYA
Sequence Clusters for the Sequence Entities in PDB 4JYA
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1516 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 204 25
95% 22 205 45
90% 22 205 47
70% 22 205 57
50% 30 290 35
40% 30 290 45
30% 33 342 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 206 23
95% 22 206 41
90% 22 206 43
70% 22 206 52
50% 24 284 41
40% 29 343 34
30% 29 344 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 172 33
95% 22 213 32
90% 22 213 35
70% 24 295 24
50% 24 296 34
40% 24 296 44
30% 24 296 67
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 207 20
95% 22 207 39
90% 22 207 41
70% 22 207 50
50% 24 289 39
40% 24 289 49
30% 27 343 48
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 205 24
95% 22 205 46
90% 22 205 48
70% 22 206 55
50% 22 206 85
40% 22 206 110
30% 22 206 129
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 209 18
95% 23 214 30
90% 23 214 33
70% 23 214 43
50% 28 297 33
40% 28 298 43
30% 28 298 65
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 201 29
95% 22 206 43
90% 22 206 45
70% 22 206 54
50% 22 206 84
40% 22 207 109
30% 24 287 74
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 120 62
95% 22 200 47
90% 22 204 49
70% 22 204 58
50% 22 204 87
40% 22 204 112
30% 22 204 131
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 22 869
95% 1 28 911
90% 1 28 933
70% 1 28 965
50% 1 28 1006
40% 1 28 1035
30% 1 28 1015
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 209 17
95% 23 209 34
90% 23 209 38
70% 23 209 47
50% 25 287 38
40% 25 287 48
30% 25 287 71
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 206 21
95% 22 207 36
90% 22 207 39
70% 22 207 48
50% 24 283 43
40% 24 284 51
30% 24 284 73
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 156 52
95% 22 205 44
90% 22 205 46
70% 22 205 56
50% 22 205 86
40% 22 205 111
30% 22 205 130
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 196 32
95% 22 196 51
90% 22 196 53
70% 22 196 64
50% 22 196 97
40% 22 196 120
30% 22 196 143
Entity #22: Chains: X - mRNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ASL-tRNA rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 26 684
95% 1 26 949
90% 1 26 972
70% 1 26 1004
50% 3 62 398
40% 3 63 419
30% 3 63 428
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 199 30
95% 22 207 37
90% 22 207 40
70% 22 207 49
50% 24 284 40
40% 24 285 50
30% 24 285 72
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 206 22
95% 22 206 40
90% 22 206 42
70% 22 206 51
50% 24 288 37
40% 24 288 47
30% 24 290 69
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 211 15
95% 29 217 28
90% 29 217 31
70% 29 217 41
50% 29 217 78
40% 29 217 102
30% 33 256 85
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 210 16
95% 23 211 33
90% 23 211 36
70% 23 211 45
50% 26 254 52
40% 26 255 67
30% 26 255 88
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 206 19
95% 23 206 38
90% 23 210 37
70% 23 210 46
50% 26 290 36
40% 27 292 46
30% 31 347 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 90 160
95% 22 206 42
90% 22 206 44
70% 22 206 53
50% 24 284 42
40% 24 284 52
30% 27 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.