Sequence Similarity Clusters for the Entities in PDB 4JVP

Entity #1 | Chains: A,B
Anti-HCV E2 alpaca nanobody D03 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38954
95 % 1 1 32937 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 31537
70 % 82 409 9
50 % 102 609 6
40 % 538 5756 1
30 % 654 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures