Sequence Similarity Clusters for the Entities in PDB 4JVP

Entity #1 | Chains: A,B
Anti-HCV E2 alpaca nanobody D03 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39413
95 % 1 1 33317 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 31879
70 % 86 417 8
50 % 108 623 5
40 % 560 5890 1
30 % 677 7330 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures