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Crystal structures of pseudouridinilated stop codons with ASLs
Sequence Clustering and Redundancy Reduction Results
4JV5
Sequence Clusters for the Sequence Entities in PDB 4JV5
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1517 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 265 27
95% 66 267 47
90% 66 267 49
70% 66 267 59
50% 96 382 34
40% 96 382 45
30% 96 387 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 268 25
95% 66 268 43
90% 66 268 45
70% 66 268 55
50% 90 376 41
40% 118 450 35
30% 118 450 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 237 35
95% 66 275 35
90% 66 275 37
70% 90 388 24
50% 90 388 33
40% 90 388 44
30% 90 388 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 269 22
95% 66 269 41
90% 66 269 43
70% 66 269 53
50% 90 378 38
40% 90 378 51
30% 116 448 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 267 26
95% 66 267 48
90% 66 267 50
70% 66 267 60
50% 66 267 93
40% 66 267 119
30% 66 267 140
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 271 20
95% 70 276 32
90% 70 276 34
70% 70 276 47
50% 97 389 32
40% 97 389 43
30% 97 389 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 263 28
95% 66 268 45
90% 66 268 47
70% 66 268 57
50% 66 268 91
40% 66 268 117
30% 90 376 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 170 53
95% 66 262 49
90% 66 266 51
70% 66 266 61
50% 66 266 94
40% 66 266 120
30% 66 266 142
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 28 1122
95% 4 38 1050
90% 4 38 1073
70% 4 38 1104
50% 4 38 1167
40% 4 38 1183
30% 4 38 1160
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 37 766
95% 4 37 1074
90% 4 37 1095
70% 4 37 1133
50% 91 379 37
40% 91 379 49
30% 91 379 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 268 23
95% 66 269 38
90% 66 269 41
70% 66 269 51
50% 66 269 90
40% 90 376 53
30% 90 376 75
Entity #20: Chains: T - 30S ribosomal protein 20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 206 42
95% 66 267 46
90% 66 267 48
70% 66 267 58
50% 66 267 92
40% 66 267 118
30% 66 267 139
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 249 33
95% 66 249 52
90% 66 249 55
70% 66 249 67
50% 66 249 104
40% 66 249 130
30% 66 249 150
Entity #22: Chains: X - mRNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ASL-tRNA rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 37 760
95% 4 37 1065
90% 4 37 1087
70% 4 37 1120
50% 18 81 439
40% 18 82 461
30% 18 82 477
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 261 29
95% 66 269 39
90% 66 269 42
70% 66 269 52
50% 90 376 39
40% 90 377 52
30% 90 377 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 268 24
95% 66 268 42
90% 66 268 44
70% 66 268 54
50% 91 380 36
40% 91 380 48
30% 91 382 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 273 18
95% 74 279 29
90% 74 279 30
70% 74 279 44
50% 74 279 83
40% 74 279 106
30% 90 326 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 272 19
95% 67 273 36
90% 67 273 38
70% 67 273 49
50% 82 321 56
40% 82 322 74
30% 82 322 96
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 268 21
95% 67 268 40
90% 67 272 39
70% 67 272 50
50% 93 382 35
40% 94 384 46
30% 121 455 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 113 139
95% 66 268 44
90% 66 268 46
70% 66 268 56
50% 90 376 40
40% 90 376 54
30% 116 446 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.