Sequence Similarity Clusters for the Entities in PDB 4JV5

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 254 36
95 % 89 255 49
90 % 89 255 54
70 % 89 255 64
50 % 116 362 28
40 % 116 362 38
30 % 129 436 36
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 256 34
95 % 89 256 45
90 % 89 256 50
70 % 89 256 59
50 % 110 356 35
40 % 125 438 20
30 % 125 439 34
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 208 46
95 % 89 263 36
90 % 89 263 41
70 % 110 367 22
50 % 110 368 27
40 % 110 368 37
30 % 110 368 57
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 257 32
95 % 89 257 43
90 % 89 257 48
70 % 89 257 57
50 % 111 361 32
40 % 111 361 43
30 % 124 437 39
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 255 35
95 % 89 255 50
90 % 89 255 55
70 % 89 256 62
50 % 89 256 88
40 % 89 256 108
30 % 89 256 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 259 29
95 % 93 264 35
90 % 93 264 40
70 % 93 264 50
50 % 117 369 26
40 % 117 370 36
30 % 117 370 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 251 37
95 % 89 256 47
90 % 89 256 52
70 % 89 256 61
50 % 89 256 87
40 % 89 257 107
30 % 111 359 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 163 58
95 % 89 250 51
90 % 89 254 56
70 % 89 254 66
50 % 89 254 90
40 % 89 254 111
30 % 89 254 123
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 30 703
95 % 8 37 749
90 % 8 37 786
70 % 8 37 837
50 % 8 37 876
40 % 8 37 904
30 % 8 37 896
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 259 27
95 % 90 259 38
90 % 90 259 44
70 % 90 259 53
50 % 111 359 31
40 % 111 359 41
30 % 111 359 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 256 30
95 % 89 257 39
90 % 89 257 45
70 % 89 257 54
50 % 110 355 34
40 % 110 356 44
30 % 110 356 62
Entity #20 | Chains: T
30S ribosomal protein 20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 204 48
95 % 89 255 48
90 % 89 255 53
70 % 89 255 63
50 % 89 255 89
40 % 89 255 110
30 % 89 255 122
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 246 39
95 % 89 246 54
90 % 89 246 59
70 % 89 246 69
50 % 89 246 95
40 % 89 246 118
30 % 89 246 131
Entity #22 | Chains: X
mRNA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ASL-tRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 36 563
95 % 8 36 781
90 % 8 36 818
70 % 8 36 861
50 % 25 79 343
40 % 25 80 371
30 % 25 80 377
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 249 38
95 % 89 257 40
90 % 89 257 46
70 % 89 257 55
50 % 110 356 33
40 % 110 357 42
30 % 110 357 61
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 256 33
95 % 89 256 44
90 % 89 256 49
70 % 89 256 58
50 % 111 360 30
40 % 111 360 40
30 % 111 362 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 261 25
95 % 97 267 34
90 % 97 267 37
70 % 97 267 46
50 % 97 267 84
40 % 97 267 103
30 % 116 313 77
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 260 26
95 % 90 261 37
90 % 90 261 42
70 % 90 261 51
50 % 109 313 54
40 % 109 314 68
30 % 109 314 89
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 256 31
95 % 90 256 42
90 % 90 260 43
70 % 90 260 52
50 % 113 362 29
40 % 114 364 39
30 % 128 443 33
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 91 198
95 % 89 256 46
90 % 89 256 51
70 % 89 256 60
50 % 110 356 36
40 % 110 356 46
30 % 123 433 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.