Sequence Similarity Clusters for the Entities in PDB 4JV5

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 253 35
95 % 89 254 48
90 % 89 254 53
70 % 89 254 63
50 % 116 359 28
40 % 116 359 38
30 % 129 432 35
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 255 33
95 % 89 255 43
90 % 89 255 48
70 % 89 255 57
50 % 110 353 35
40 % 125 434 20
30 % 125 435 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 207 46
95 % 89 262 35
90 % 89 262 40
70 % 110 364 22
50 % 110 365 27
40 % 110 365 37
30 % 110 365 56
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 256 31
95 % 89 256 41
90 % 89 256 46
70 % 89 256 55
50 % 111 358 32
40 % 111 358 43
30 % 124 433 38
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 254 34
95 % 89 254 49
90 % 89 254 54
70 % 89 255 60
50 % 89 255 86
40 % 89 255 107
30 % 89 255 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 258 27
95 % 93 263 34
90 % 93 263 39
70 % 93 263 49
50 % 117 366 26
40 % 117 367 36
30 % 117 367 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 250 36
95 % 89 255 45
90 % 89 255 50
70 % 89 255 59
50 % 89 255 85
40 % 89 256 106
30 % 111 356 61
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 162 57
95 % 89 249 51
90 % 89 253 55
70 % 89 253 64
50 % 89 253 88
40 % 89 253 109
30 % 89 253 123
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 30 695
95 % 8 37 718
90 % 8 37 760
70 % 8 37 804
50 % 8 37 849
40 % 8 37 882
30 % 8 37 873
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 258 26
95 % 90 258 37
90 % 90 258 43
70 % 90 258 52
50 % 111 356 31
40 % 111 356 41
30 % 111 356 58
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 255 28
95 % 89 256 38
90 % 89 256 44
70 % 89 256 53
50 % 110 352 34
40 % 110 353 44
30 % 110 353 60
Entity #20 | Chains: T
30S ribosomal protein 20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 203 47
95 % 89 254 47
90 % 89 254 52
70 % 89 254 62
50 % 89 254 87
40 % 89 254 108
30 % 89 254 121
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 245 38
95 % 89 245 53
90 % 89 245 58
70 % 89 245 68
50 % 89 245 93
40 % 89 245 117
30 % 89 245 131
Entity #22 | Chains: X
mRNA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ASL-tRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 36 535
95 % 8 36 753
90 % 8 36 793
70 % 8 36 836
50 % 25 79 336
40 % 25 80 360
30 % 25 80 374
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 248 37
95 % 89 256 39
90 % 89 256 45
70 % 89 256 54
50 % 110 353 33
40 % 110 354 42
30 % 110 354 59
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 255 32
95 % 89 255 42
90 % 89 255 47
70 % 89 255 56
50 % 111 357 30
40 % 111 357 40
30 % 111 359 57
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 260 24
95 % 97 266 33
90 % 97 266 36
70 % 97 266 45
50 % 97 266 83
40 % 97 266 102
30 % 116 312 77
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 259 25
95 % 90 260 36
90 % 90 260 41
70 % 90 260 50
50 % 109 312 52
40 % 109 313 64
30 % 109 313 85
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 255 30
95 % 90 255 40
90 % 90 259 42
70 % 90 259 51
50 % 113 359 29
40 % 114 361 39
30 % 128 438 32
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 91 197
95 % 89 255 44
90 % 89 255 49
70 % 89 255 58
50 % 110 353 36
40 % 110 353 45
30 % 123 429 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.