Sequence Similarity Clusters for the Entities in PDB 4JV5

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 267 37
95 % 90 268 51
90 % 90 268 54
70 % 90 268 65
50 % 117 395 25
40 % 117 395 37
30 % 130 494 30
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 269 35
95 % 90 269 47
90 % 90 269 50
70 % 90 269 60
50 % 111 389 34
40 % 126 491 18
30 % 126 491 31
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 217 48
95 % 90 276 36
90 % 90 276 40
70 % 111 402 20
50 % 111 407 23
40 % 111 407 33
30 % 111 407 54
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 270 33
95 % 90 270 44
90 % 90 270 48
70 % 90 270 57
50 % 112 394 31
40 % 112 394 43
30 % 125 495 33
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 268 36
95 % 90 268 52
90 % 90 268 55
70 % 90 270 58
50 % 90 270 87
40 % 90 270 108
30 % 90 270 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 272 29
95 % 94 277 35
90 % 94 277 39
70 % 94 277 50
50 % 118 402 24
40 % 118 405 34
30 % 118 405 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 264 38
95 % 90 269 49
90 % 90 269 52
70 % 90 269 62
50 % 90 271 86
40 % 90 271 106
30 % 112 390 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 176 55
95 % 90 263 53
90 % 90 267 56
70 % 90 267 66
50 % 90 267 90
40 % 90 267 111
30 % 90 267 123
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 30 750
95 % 8 37 804
90 % 8 37 834
70 % 8 37 878
50 % 8 37 924
40 % 8 37 947
30 % 8 37 935
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 272 28
95 % 91 272 40
90 % 91 272 45
70 % 91 272 54
50 % 112 394 28
40 % 112 397 39
30 % 112 397 56
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 269 31
95 % 90 270 41
90 % 90 270 46
70 % 90 270 55
50 % 111 388 33
40 % 111 391 42
30 % 111 391 61
Entity #20 | Chains: T
30S ribosomal protein 20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 217 49
95 % 90 268 50
90 % 90 268 53
70 % 90 268 64
50 % 90 268 89
40 % 90 268 110
30 % 90 268 122
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 259 42
95 % 90 259 56
90 % 90 259 60
70 % 90 259 69
50 % 90 259 94
40 % 90 259 116
30 % 90 259 129
Entity #22 | Chains: X
mRNA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ASL-tRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 36 608
95 % 8 36 838
90 % 8 36 872
70 % 8 36 906
50 % 25 87 360
40 % 25 90 369
30 % 25 90 369
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 262 39
95 % 90 270 42
90 % 90 270 47
70 % 90 270 56
50 % 111 390 30
40 % 111 393 40
30 % 111 393 59
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 269 34
95 % 90 269 46
90 % 90 269 49
70 % 90 269 59
50 % 112 394 29
40 % 112 394 41
30 % 112 396 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 274 26
95 % 98 280 33
90 % 98 280 38
70 % 98 280 49
50 % 98 280 84
40 % 98 280 103
30 % 117 334 88
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 273 27
95 % 91 274 38
90 % 91 274 42
70 % 91 274 52
50 % 110 336 65
40 % 110 339 76
30 % 110 339 91
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 269 32
95 % 91 269 43
90 % 91 273 43
70 % 91 273 53
50 % 114 395 26
40 % 115 399 35
30 % 129 504 28
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 91 204
95 % 90 269 48
90 % 90 269 51
70 % 90 269 61
50 % 111 389 35
40 % 111 389 45
30 % 124 492 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.