Sequence Similarity Clusters for the Entities in PDB 4JV5

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 268 39
95 % 91 269 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 91 269 58
70 % 91 269 68
50 % 118 418 26
40 % 118 418 38
30 % 131 522 31
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 270 35
95 % 91 270 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 91 270 54
70 % 91 270 64
50 % 112 412 33
40 % 127 522 19
30 % 127 522 32
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 217 51
95 % 91 277 40 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 91 277 45
70 % 112 419 20
50 % 112 429 24
40 % 112 429 36
30 % 112 429 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 271 33
95 % 91 271 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 91 271 52
70 % 91 271 62
50 % 113 416 31
40 % 113 416 44
30 % 126 520 34
Entity #14 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 269 38
95 % 91 269 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 91 269 59
70 % 91 277 56
50 % 91 277 91
40 % 91 277 115
30 % 91 277 123
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 273 30
95 % 95 278 38
90 % 95 278 43
70 % 95 278 54
50 % 119 425 25
40 % 119 430 35
30 % 119 430 54
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 265 41
95 % 91 270 51
90 % 91 270 56
70 % 91 270 66
50 % 91 277 90
40 % 91 277 114
30 % 113 411 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 76 177 58
95 % 91 264 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 91 268 60
70 % 91 268 69
50 % 91 268 93
40 % 91 268 117
30 % 91 268 128
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 30 794
95 % 8 37 852 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 8 37 885
70 % 8 37 919
50 % 8 37 970
40 % 8 37 989
30 % 8 37 965
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 273 29
95 % 92 273 42
90 % 92 273 48
70 % 92 273 59
50 % 113 418 28
40 % 113 421 39
30 % 113 421 56
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 270 31
95 % 91 271 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.7
PDBFlex
90 % 91 271 50
70 % 91 271 60
50 % 112 407 35
40 % 112 412 43
30 % 112 412 62
Entity #20 | Chains: T
30S ribosomal protein 20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 85 218 50
95 % 91 269 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 91 269 57
70 % 91 269 67
50 % 91 269 92
40 % 91 269 116
30 % 91 269 127
Entity #21 | Chains: U
30S ribosomal protein THX protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 260 43
95 % 91 260 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 91 260 63
70 % 91 260 75
50 % 91 260 98
40 % 91 260 121
30 % 91 260 132
Entity #22 | Chains: X
mRNA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ASL-tRNA rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 36 653
95 % 8 36 888 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 8 36 922
70 % 8 36 954
50 % 25 99 333
40 % 25 104 339
30 % 25 104 349
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 263 42
95 % 91 271 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 91 271 51
70 % 91 271 61
50 % 112 413 30
40 % 112 418 40
30 % 112 418 57
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 91 270 34
95 % 91 270 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 91 270 53
70 % 91 270 63
50 % 113 415 29
40 % 113 415 42
30 % 113 417 60
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 275 27
95 % 99 281 37 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 99 281 41
70 % 99 281 52
50 % 99 281 88
40 % 99 281 109
30 % 118 352 93
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 92 274 28
95 % 92 275 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 92 275 46
70 % 92 275 57
50 % 111 353 68
40 % 111 358 85
30 % 111 358 95
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 92 270 32
95 % 92 270 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 92 274 47
70 % 92 274 58
50 % 115 418 27
40 % 116 424 37
30 % 130 535 30
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 91 217
95 % 91 270 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 91 270 55
70 % 91 270 65
50 % 112 409 34
40 % 112 409 47
30 % 125 517 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.