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Crystal structures of pseudouridinilated stop codons with ASLs
Sequence Clustering and Redundancy Reduction Results
4JV5
Sequence Clusters for the Sequence Entities in PDB 4JV5
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1517 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 197 29
95% 57 198 45
90% 57 198 47
70% 57 198 60
50% 76 283 35
40% 76 283 45
30% 89 334 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 199 26
95% 57 199 40
90% 57 199 42
70% 57 199 54
50% 70 277 41
40% 85 335 35
30% 85 336 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 166 36
95% 57 206 31
90% 57 206 33
70% 70 288 24
50% 70 289 34
40% 70 289 44
30% 70 289 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 200 23
95% 57 200 38
90% 57 200 40
70% 57 200 51
50% 71 282 39
40% 71 282 50
30% 84 335 49
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 198 27
95% 57 198 46
90% 57 198 48
70% 57 199 57
50% 57 199 90
40% 57 199 113
30% 57 199 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 202 21
95% 61 207 30
90% 61 207 32
70% 61 207 43
50% 77 290 33
40% 77 291 43
30% 77 291 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 194 30
95% 57 199 42
90% 57 199 44
70% 57 199 56
50% 57 199 89
40% 57 200 112
30% 71 280 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 113 66
95% 57 193 50
90% 57 197 49
70% 57 197 61
50% 57 197 93
40% 57 197 116
30% 57 197 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 21 924
95% 4 27 942
90% 4 27 966
70% 4 27 1000
50% 4 27 1041
40% 4 27 1067
30% 4 27 1042
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 202 20
95% 58 202 33
90% 58 202 36
70% 58 202 47
50% 71 280 38
40% 71 280 49
30% 71 280 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 199 24
95% 57 200 35
90% 57 200 38
70% 57 200 48
50% 70 276 43
40% 70 277 52
30% 70 277 75
Entity #20: Chains: T - 30S ribosomal protein 20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 149 54
95% 57 198 44
90% 57 198 46
70% 57 198 59
50% 57 198 92
40% 57 198 114
30% 57 198 138
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 189 32
95% 57 189 52
90% 57 189 55
70% 57 189 67
50% 57 189 112
40% 57 189 135
30% 57 189 153
Entity #22: Chains: X - mRNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ASL-tRNA rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 25 714
95% 4 25 998
90% 4 25 1017
70% 4 25 1042
50% 14 61 403
40% 14 62 424
30% 14 62 429
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 192 31
95% 57 200 36
90% 57 200 39
70% 57 200 49
50% 70 277 40
40% 70 278 51
30% 70 278 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 199 25
95% 57 199 39
90% 57 199 41
70% 57 199 52
50% 71 281 37
40% 71 281 48
30% 71 283 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 204 18
95% 65 210 29
90% 65 210 31
70% 65 210 42
50% 65 210 83
40% 65 210 107
30% 77 249 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 203 19
95% 58 204 32
90% 58 204 34
70% 58 204 44
50% 70 247 55
40% 70 248 70
30% 70 248 94
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 199 22
95% 58 199 37
90% 58 203 35
70% 58 203 45
50% 73 283 36
40% 74 285 46
30% 88 339 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 90 159
95% 57 199 41
90% 57 199 43
70% 57 199 55
50% 70 277 42
40% 70 277 54
30% 83 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.