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Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state (this file contains the 50S subunit)
Sequence Clustering and Redundancy Reduction Results
4JUX
Sequence Clusters for the Sequence Entities in PDB 4JUX
Entity #1: Chains: A - 23S ribosomal RNA rna, length: 2915 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: U - 50S ribosomal protein L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 143 80
95% 7 151 115
90% 7 151 124
70% 7 151 148
50% 17 290 66
40% 17 291 84
30% 17 291 106
Entity #11: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 151 71
95% 7 151 117
90% 7 151 126
70% 7 151 150
50% 7 179 148
40% 17 285 96
30% 17 285 118
Entity #12: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 158 60
95% 9 159 96
90% 9 159 104
70% 9 159 127
50% 19 270 87
40% 19 270 108
30% 19 272 130
Entity #13: Chains: X - 50S ribosomal protein L23 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 152 64
95% 7 152 107
90% 7 152 115
70% 7 152 141
50% 7 176 154
40% 17 291 87
30% 69 369 73
Entity #14: Chains: Y - 50S ribosomal protein L24 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 151 70
95% 7 151 116
90% 7 151 125
70% 7 151 149
50% 7 153 193
40% 17 265 115
30% 17 267 137
Entity #15: Chains: Z - 50S ribosomal protein L25 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 151 67
95% 8 152 104
90% 8 152 112
70% 8 152 139
50% 8 152 191
40% 8 152 228
30% 8 152 240
Entity #16: Chains: 0 - 50S ribosomal protein L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 136 96
95% 8 152 102
90% 8 152 110
70% 8 152 135
50% 18 288 67
40% 18 288 88
30% 18 288 108
Entity #17: Chains: 1 - 50S ribosomal protein L28 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 126 114
95% 7 148 123
90% 7 148 132
70% 7 148 155
50% 7 148 202
40% 7 148 236
30% 7 148 252
Entity #18: Chains: 2 - 50S ribosomal protein L29 protein, length: 72 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 139 97
95% 7 142 131
90% 7 142 144
70% 7 142 168
50% 7 142 212
40% 17 260 119
30% 17 284 120
Entity #19: Chains: D - 50S ribosomal protein L2 protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 151 65
95% 7 151 108
90% 7 151 116
70% 7 173 114
50% 17 283 79
40% 17 283 100
30% 17 283 122
Entity #2: Chains: B - 5S ribosomal RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 158 58
95% 8 158 98
90% 8 158 106
70% 8 158 129
50% 8 158 176
40% 18 291 86
30% 18 291 107
Entity #21: Chains: 4 - 50S ribosomal protein L31 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 125 117
95% 7 125 171
90% 7 125 180
70% 7 125 216
50% 7 163 172
40% 7 163 206
30% 7 163 225
Entity #22: Chains: 5 - 50S ribosomal protein L32 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 135 105
95% 7 143 128
90% 7 143 140
70% 7 143 165
50% 7 175 161
40% 17 282 102
30% 17 282 124
Entity #23: Chains: 6 - 50S ribosomal protein L33 protein, length: 54 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 149 76
95% 7 149 122
90% 7 149 131
70% 7 149 153
50% 7 150 199
40% 17 280 104
30% 17 280 126
Entity #24: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 151 73
95% 7 151 119
90% 7 151 128
70% 7 151 152
50% 7 151 197
40% 7 151 232
30% 7 151 246
Entity #25: Chains: 8 - 50S ribosomal protein L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 151 72
95% 7 151 118
90% 7 151 127
70% 7 151 151
50% 7 177 152
40% 7 177 182
30% 7 177 205
Entity #26: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 105 184
95% 7 105 262
90% 7 105 273
70% 7 131 206
50% 17 238 109
40% 17 238 132
30% 17 238 152
Entity #27: Chains: C - 50S ribosomal protein L1 protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 66 334
95% 12 90 301
90% 12 91 315
70% 12 91 338
50% 13 128 240
40% 13 128 269
30% 18 170 210
Entity #28: Chains: E - 50S ribosomal protein L3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 151 66
95% 7 151 110
90% 7 151 118
70% 7 151 144
50% 17 288 72
40% 17 288 93
30% 17 289 114
Entity #29: Chains: F - 50S ribosomal protein L4 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 135 103
95% 7 151 109
90% 7 151 117
70% 7 151 143
50% 7 178 150
40% 7 178 178
30% 18 290 109
Entity #3: Chains: N - 50S ribosomal protein L13 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 146 77
95% 7 146 125
90% 7 146 135
70% 7 146 158
50% 17 265 90
40% 17 265 114
30% 17 266 139
Entity #30: Chains: G - 50S ribosomal protein L5 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 136 98
95% 8 152 105
90% 8 152 113
70% 8 174 113
50% 19 288 68
40% 19 288 89
30% 19 288 110
Entity #31: Chains: H - 50S ribosomal protein L6 protein, length: 180 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 151 68
95% 7 151 111
90% 7 151 120
70% 7 151 145
50% 8 183 147
40% 18 292 85
30% 72 397 61
Entity #32: Chains: K - 50S ribosomal protein L11 protein, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 35 581
95% 6 38 737
90% 6 38 763
70% 6 60 486
50% 17 196 127
40% 17 199 155
30% 17 201 179
Entity #33: Chains: J - 50S ribosomal protein L10 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #34: Chains: L - 50S ribosomal protein L12 CTD protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 132 108
95% 7 151 114
90% 7 151 123
70% 7 173 115
50% 18 296 62
40% 18 297 81
30% 72 402 56
Entity #5: Chains: P - 50S ribosomal protein L15 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 151 69
95% 7 151 112
90% 7 151 121
70% 7 151 146
50% 7 153 192
40% 17 285 95
30% 71 394 62
Entity #6: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 136 102
95% 7 152 106
90% 7 152 114
70% 7 177 111
50% 17 287 73
40% 17 287 94
30% 17 287 116
Entity #7: Chains: R - 50S ribosomal protein L17 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 156 53
95% 8 156 91
90% 8 156 99
70% 8 156 122
50% 18 287 64
40% 18 289 82
30% 18 291 102
Entity #8: Chains: S - 50S ribosomal protein L18 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 132 109
95% 7 132 159
90% 7 132 170
70% 7 132 200
50% 17 284 78
40% 17 284 99
30% 17 284 119
Entity #9: Chains: T - 50S ribosomal protein L19 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 135 104
95% 7 151 113
90% 7 151 122
70% 7 151 147
50% 7 151 196
40% 7 151 231
30% 7 151 245
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.