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Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state (this file contains the 50S subunit)
Sequence Clustering and Redundancy Reduction Results
4JUX
Sequence Clusters for the Sequence Entities in PDB 4JUX
Entity #1: Chains: A - 23S ribosomal RNA rna, length: 2915 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: U - 50S ribosomal protein L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 148 78
95% 7 156 115
90% 7 156 123
70% 7 156 142
50% 17 295 64
40% 17 296 83
30% 17 296 105
Entity #11: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 156 70
95% 7 156 117
90% 7 156 125
70% 7 156 144
50% 7 184 148
40% 17 290 94
30% 17 290 115
Entity #12: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 163 55
95% 9 164 93
90% 9 164 101
70% 9 164 124
50% 19 275 86
40% 19 275 111
30% 19 277 129
Entity #13: Chains: X - 50S ribosomal protein L23 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 157 63
95% 7 157 106
90% 7 157 115
70% 7 157 136
50% 7 181 151
40% 17 296 86
30% 69 374 73
Entity #14: Chains: Y - 50S ribosomal protein L24 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 156 69
95% 7 156 116
90% 7 156 124
70% 7 156 143
50% 7 158 180
40% 17 270 115
30% 17 272 133
Entity #15: Chains: Z - 50S ribosomal protein L25 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 156 66
95% 8 157 102
90% 8 157 110
70% 8 157 133
50% 8 157 178
40% 8 157 212
30% 8 157 230
Entity #16: Chains: 0 - 50S ribosomal protein L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 141 82
95% 8 157 100
90% 8 157 108
70% 8 157 130
50% 18 293 66
40% 18 293 87
30% 18 293 107
Entity #17: Chains: 1 - 50S ribosomal protein L28 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 131 112
95% 7 153 122
90% 7 153 130
70% 7 153 153
50% 7 153 197
40% 7 153 231
30% 7 153 244
Entity #18: Chains: 2 - 50S ribosomal protein L29 protein, length: 72 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 144 83
95% 7 147 128
90% 7 147 137
70% 7 147 161
50% 7 147 206
40% 17 265 117
30% 17 289 120
Entity #19: Chains: D - 50S ribosomal protein L2 protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 156 64
95% 7 156 107
90% 7 156 116
70% 7 178 113
50% 17 288 74
40% 17 288 98
30% 17 288 121
Entity #2: Chains: B - 5S ribosomal RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 161 58
95% 8 161 97
90% 8 161 105
70% 8 161 128
50% 8 161 173
40% 18 294 89
30% 18 294 110
Entity #21: Chains: 4 - 50S ribosomal protein L31 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 126 115
95% 7 126 172
90% 7 126 181
70% 7 126 217
50% 7 164 170
40% 7 164 204
30% 7 164 224
Entity #22: Chains: 5 - 50S ribosomal protein L32 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 140 102
95% 7 148 126
90% 7 148 135
70% 7 148 158
50% 7 180 152
40% 17 287 99
30% 17 287 122
Entity #23: Chains: 6 - 50S ribosomal protein L33 protein, length: 54 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 154 74
95% 7 154 121
90% 7 154 129
70% 7 154 151
50% 7 155 188
40% 17 285 101
30% 17 285 125
Entity #24: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 156 72
95% 7 156 119
90% 7 156 127
70% 7 156 146
50% 7 156 185
40% 7 156 221
30% 7 156 235
Entity #25: Chains: 8 - 50S ribosomal protein L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 156 71
95% 7 156 118
90% 7 156 126
70% 7 156 145
50% 7 182 150
40% 7 182 178
30% 7 182 199
Entity #26: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 110 149
95% 7 110 218
90% 7 110 231
70% 7 136 195
50% 17 243 106
40% 17 243 129
30% 17 243 150
Entity #27: Chains: C - 50S ribosomal protein L1 protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 68 310
95% 12 92 297
90% 12 93 308
70% 12 93 330
50% 13 130 240
40% 13 130 265
30% 18 172 206
Entity #28: Chains: E - 50S ribosomal protein L3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 156 65
95% 7 156 110
90% 7 156 118
70% 7 156 138
50% 17 293 69
40% 17 293 90
30% 17 294 111
Entity #29: Chains: F - 50S ribosomal protein L4 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 140 96
95% 7 156 109
90% 7 156 117
70% 7 156 137
50% 7 183 149
40% 7 183 177
30% 18 295 108
Entity #3: Chains: N - 50S ribosomal protein L13 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 151 75
95% 7 151 123
90% 7 151 132
70% 7 151 156
50% 17 270 89
40% 17 270 114
30% 17 271 135
Entity #30: Chains: G - 50S ribosomal protein L5 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 141 85
95% 8 157 103
90% 8 157 111
70% 8 179 111
50% 19 293 67
40% 19 293 88
30% 19 293 109
Entity #31: Chains: H - 50S ribosomal protein L6 protein, length: 180 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 156 67
95% 7 156 111
90% 7 156 119
70% 7 156 139
50% 8 188 144
40% 18 297 84
30% 72 402 60
Entity #32: Chains: K - 50S ribosomal protein L11 protein, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 38 525
95% 6 41 678
90% 6 41 709
70% 6 63 462
50% 17 199 127
40% 17 202 152
30% 17 204 173
Entity #33: Chains: J - 50S ribosomal protein L10 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #34: Chains: L - 50S ribosomal protein L12 CTD protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 137 104
95% 7 156 114
90% 7 156 122
70% 7 178 114
50% 18 301 62
40% 18 302 79
30% 72 407 56
Entity #5: Chains: P - 50S ribosomal protein L15 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 156 68
95% 7 156 112
90% 7 156 120
70% 7 156 140
50% 7 158 179
40% 17 290 92
30% 71 399 62
Entity #6: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 141 86
95% 7 157 105
90% 7 157 114
70% 7 182 110
50% 17 292 70
40% 17 292 91
30% 17 292 113
Entity #7: Chains: R - 50S ribosomal protein L17 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 161 51
95% 8 161 89
90% 8 161 98
70% 8 161 120
50% 18 292 63
40% 18 294 80
30% 18 296 99
Entity #8: Chains: S - 50S ribosomal protein L18 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 135 107
95% 7 135 157
90% 7 135 168
70% 7 135 198
50% 17 289 73
40% 17 289 97
30% 17 289 119
Entity #9: Chains: T - 50S ribosomal protein L19 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 140 100
95% 7 156 113
90% 7 156 121
70% 7 156 141
50% 7 156 183
40% 7 156 218
30% 7 156 233
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.