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Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state (this file contains the 30S subunit)
Sequence Clustering and Redundancy Reduction Results
4JUW
Sequence Clusters for the Sequence Entities in PDB 4JUW
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1516 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 250 30
95% 22 255 46
90% 22 255 49
70% 22 255 61
50% 22 255 97
40% 22 255 122
30% 32 363 78
Entity #11: Chains: Q - 30S ribosomal protein S17 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 157 62
95% 22 249 51
90% 22 253 53
70% 22 253 65
50% 22 253 100
40% 22 253 126
30% 22 253 146
Entity #12: Chains: R - 30S ribosomal protein S18 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 26 1130
95% 3 36 1041
90% 3 36 1064
70% 3 36 1093
50% 3 36 1157
40% 3 36 1189
30% 3 36 1178
Entity #13: Chains: S - 30S ribosomal protein S19 protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 35 741
95% 3 35 1070
90% 3 35 1092
70% 3 35 1130
50% 33 366 38
40% 33 366 52
30% 33 366 75
Entity #14: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 193 43
95% 22 254 47
90% 22 254 50
70% 22 254 62
50% 22 254 98
40% 22 254 123
30% 22 254 143
Entity #15: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 255 25
95% 22 256 39
90% 22 256 43
70% 22 256 55
50% 22 256 96
40% 32 363 55
30% 32 363 77
Entity #16: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 35 734
95% 3 35 1063
90% 3 35 1085
70% 3 35 1119
50% 9 79 449
40% 9 80 467
30% 9 80 487
Entity #17: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 248 32
95% 22 256 40
90% 22 256 44
70% 22 256 56
50% 32 363 40
40% 32 364 54
30% 32 364 76
Entity #18: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 255 26
95% 22 255 43
90% 22 255 46
70% 22 255 58
50% 33 367 37
40% 33 367 51
30% 33 369 72
Entity #19: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 260 18
95% 29 266 34
90% 29 266 36
70% 29 266 47
50% 29 266 88
40% 29 266 112
30% 37 313 94
Entity #2: Chains: V - PE hybrid state tRNA Phe rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 259 20
95% 23 260 37
90% 23 260 39
70% 23 260 51
50% 30 308 57
40% 30 309 73
30% 30 309 97
Entity #21: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 255 23
95% 23 255 41
90% 23 259 40
70% 23 259 52
50% 35 369 36
40% 36 371 49
30% 39 408 50
Entity #22: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 113 133
95% 22 255 45
90% 22 255 48
70% 22 255 60
50% 32 363 41
40% 32 363 56
30% 34 399 59
Entity #23: Chains: Y - Elongation factor G protein, length: 680 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 21 1387
95% 9 34 1044
90% 9 35 1015
70% 9 35 1048
50% 15 52 672
40% 15 52 697
30% 17 54 670
Entity #24: Chains: U - 30S ribosomal protein THX protein, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 238 34
95% 22 238 55
90% 22 238 59
70% 22 238 71
50% 22 238 110
40% 22 238 133
30% 22 238 153
Entity #3: Chains: X - mRNA rna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 252 29
95% 22 254 48
90% 22 254 51
70% 22 254 63
50% 38 369 34
40% 38 369 48
30% 38 374 67
Entity #5: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 255 27
95% 22 255 44
90% 22 255 47
70% 22 255 59
50% 32 363 42
40% 36 403 39
30% 36 403 53
Entity #6: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 224 37
95% 22 262 36
90% 22 262 38
70% 32 375 24
50% 32 375 33
40% 32 375 47
30% 32 375 71
Entity #7: Chains: M - 30S ribosomal protein S13 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 256 24
95% 22 256 42
90% 22 256 45
70% 22 256 57
50% 32 365 39
40% 32 365 53
30% 34 401 57
Entity #8: Chains: N - 30S ribosomal protein S14 TYPE Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 254 28
95% 22 254 49
90% 22 254 52
70% 22 254 64
50% 22 254 99
40% 22 254 124
30% 22 254 144
Entity #9: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 258 21
95% 24 263 35
90% 24 263 37
70% 24 263 48
50% 37 376 32
40% 37 376 45
30% 37 376 69
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.