Sequence Similarity Clusters for the Entities in PDB 4JUO

Entity #1 | Chains: A
DNA topoisomerase 4 subunit A protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 1517
95 % 14 14 2046 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.3
PDBFlex
90 % 14 14 2097
70 % 14 14 2103
50 % 49 49 473
40 % 50 50 514
30 % 50 50 506
Entity #2 | Chains: C
DNA topoisomerase 4 subunit B protein, length: 670 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52067
95 % 1 1 38681
90 % 1 1 36908
70 % 1 1 32831
50 % 1 1 28105
40 % 1 1 24887
30 % 1 1 21221
Entity #3 | Chains: E
E-site DNA dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F
E-site DNA dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: G
E-site DNA dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: H
E-site DNA dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures