Sequence Similarity Clusters for the Entities in PDB 4JUO

Entity #1 | Chains: A
DNA topoisomerase 4 subunit A protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 1405
95 % 14 14 1888 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.4
PDBFlex
90 % 14 14 1933
70 % 14 14 1955
50 % 45 45 495
40 % 45 45 532
30 % 45 45 534
Entity #2 | Chains: C
DNA topoisomerase 4 subunit B protein, length: 670 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49096
95 % 1 1 36543
90 % 1 1 34940
70 % 1 1 31203
50 % 1 1 26785
40 % 1 1 23719
30 % 1 1 20221
Entity #3 | Chains: E
E-site DNA dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F
E-site DNA dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: G
E-site DNA dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: H
E-site DNA dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.