Sequence Similarity Clusters for the Entities in PDB 4JNG

Entity #1 | Chains: L
RNA (42-MER) rna, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D
Nucleocapsid protein protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 4378
95 % 1 5 4703 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 3.0
PDBFlex
90 % 1 5 4732
70 % 1 5 4611
50 % 1 7 2811
40 % 2 11 1484
30 % 2 11 1474

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures