Sequence Similarity Clusters for the Entities in PDB 4JNG

Entity #1 | Chains: L
RNA (42-MER) rna, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D
Nucleocapsid protein protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 3642
95 % 1 5 4424 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 3.0
PDBFlex
90 % 1 5 4447
70 % 1 5 4373
50 % 1 7 2668
40 % 2 11 1437
30 % 2 11 1412

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.