Sequence Similarity Clusters for the Entities in PDB 4JN1

Entity #1 | Chains: H
anti-dabigatran Fab1, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26823
95 % 2 2 22377 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.3
PDBFlex
90 % 2 2 21713
70 % 270 2222 2
50 % 554 4587 1
40 % 554 4587 1
30 % 598 5392 1
Entity #2 | Chains: L
anti-dabigatran Fab1, light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26973
95 % 2 2 22476 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 75 693 3
70 % 269 2264 1
50 % 555 4587 1
40 % 555 4587 1
30 % 599 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.