Sequence Similarity Clusters for the Entities in PDB 4JN1

Entity #1 | Chains: H
anti-dabigatran Fab1, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27305
95 % 2 2 22807 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 2 22121
70 % 273 2244 2
50 % 560 4633 1
40 % 560 4633 1
30 % 608 5461 1
Entity #2 | Chains: L
anti-dabigatran Fab1, light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27457
95 % 2 2 22907 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 75 701 3
70 % 272 2287 1
50 % 561 4633 1
40 % 561 4633 1
30 % 609 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.