Sequence Similarity Clusters for the Entities in PDB 4JN1

Entity #1 | Chains: H
anti-dabigatran Fab1, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 25387
95 % 2 2 22413
90 % 2 2 21709
70 % 315 2475 2
50 % 645 5101 1
40 % 799 5750 1
30 % 987 7168 1
Entity #2 | Chains: L
anti-dabigatran Fab1, light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29456
95 % 2 2 22411 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 103 761 2
70 % 314 2516 1
50 % 646 5101 1
40 % 800 5750 1
30 % 988 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures