Sequence Similarity Clusters for the Entities in PDB 4JN1

Entity #1 | Chains: H
anti-dabigatran Fab1, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27630
95 % 2 2 23072
90 % 2 2 22368
70 % 284 2311 2
50 % 584 4781 1
40 % 584 4781 1
30 % 632 5635 1
Entity #2 | Chains: L
anti-dabigatran Fab1, light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27782
95 % 2 2 23175 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 82 729 3
70 % 284 2362 1
50 % 585 4781 1
40 % 585 4781 1
30 % 633 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures