Sequence Similarity Clusters for the Entities in PDB 4JKC

Entity #1 | Chains: A,B
Pre-mRNA-processing-splicing factor 8 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 2786
95 % 5 13 2800 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 5 13 2864
70 % 5 13 2840
50 % 5 13 2791
40 % 5 13 2727
30 % 5 13 2544

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4JK8 1 A, B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990 9606
2 4JKB 1 A, B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990 9606
3 4JKA 1 A, B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990 9606
4 4JK7 1 A, B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990 9606
5 4JKC 1 A, B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990' 9606
6 4JK9 1 A, B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990 9606
7 4JKD 1 A, B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990' 9606
8 4JKE 1 A, B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990' 9606
9 4JKH 1 A, B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990' 9606
10 4JKG 1 A Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990 9606
11 4JKG 2 B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990 9606
12 3ENB 1 A, B Pre-mRNA-processing-splicing factor 8 UNP residues 1769-1990 9606
13 4JKF 1 A, B Pre-mRNA-processing-splicing factor 8 PRP8 RNase H-like domain, UNP residues 1769-1990' 9606