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An Information Portal to 110790 Biological Macromolecular Structures

Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome
Sequence Clustering and Redundancy Reduction Results
4JJN
Sequence Clusters for the Sequence Entities in PDB 4JJN
Entity #1: Chains: A,E - Histone H3 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 18441
95% 3 3 10420
90% 88 103 127
70% 88 103 144
50% 90 106 166
40% 90 106 183
30% 90 106 198
Entity #2: Chains: B,F - Histone H4 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 11046
95% 4 4 5862
90% 93 111 114
70% 93 111 129
50% 93 111 155
40% 93 111 172
30% 93 111 187
Entity #3: Chains: C,G - Histone H2A.2 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 36599
95% 3 3 10450
90% 3 3 10291
70% 76 96 149
50% 82 102 167
40% 82 102 184
30% 82 102 199
Entity #4: Chains: D,H - Histone H2B.2 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 18549
95% 3 3 10458
90% 3 3 10299
70% 80 95 152
50% 80 95 184
40% 80 95 201
30% 80 95 217
Entity #5: Chains: K,L - Regulatory protein SIR3 protein, length: 382 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 27162
95% 1 1 21859
90% 1 1 21186
70% 1 1 19395
50% 1 1 16861
40% 1 1 15030
30% 1 1 12882
Entity #6: Chains: I - DNA (146-MER) dna, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: J - DNA (146-MER) dna, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.