Sequence Similarity Clusters for the Entities in PDB 4JJN

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21991
95 % 3 3 12396
90 % 125 152 78
70 % 126 153 96
50 % 128 156 131
40 % 128 156 145
30 % 128 156 160
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 13289
95 % 4 4 6982
90 % 134 164 74
70 % 134 164 87
50 % 134 164 122
40 % 134 164 139
30 % 134 164 155
Entity #3 | Chains: C,G
Histone H2A.2 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43304
95 % 5 5 6136
90 % 5 5 6118
70 % 120 153 88
50 % 130 163 117
40 % 130 163 138
30 % 130 163 150
Entity #4 | Chains: D,H
Histone H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22122
95 % 4 4 10194
90 % 4 4 10056
70 % 119 146 104
50 % 119 146 140
40 % 119 146 155
30 % 119 146 172
Entity #5 | Chains: K,L
Regulatory protein SIR3 protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32457
95 % 1 1 25966
90 % 1 1 25114
70 % 1 1 22874
50 % 1 1 19731
40 % 1 1 17505
30 % 1 1 14967
Entity #6 | Chains: I
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.