Sequence Similarity Clusters for the Entities in PDB 4JJN

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19430
95 % 3 3 10955
90 % 107 126 90
70 % 107 126 108
50 % 109 129 145
40 % 109 129 158
30 % 109 129 177
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 11639
95 % 4 4 6170
90 % 113 135 76
70 % 113 135 92
50 % 113 135 131
40 % 113 135 149
30 % 113 135 166
Entity #3 | Chains: C,G
Histone H2A.2 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38534
95 % 4 4 6101
90 % 4 4 6079
70 % 99 123 102
50 % 105 129 134
40 % 105 129 150
30 % 105 129 167
Entity #4 | Chains: D,H
Histone H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19547
95 % 3 3 10993
90 % 3 3 10824
70 % 99 118 130
50 % 99 118 157
40 % 99 118 170
30 % 99 118 187
Entity #5 | Chains: K,L
Regulatory protein SIR3 protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28695
95 % 1 1 23038
90 % 1 1 22291
70 % 1 1 20325
50 % 1 1 17622
40 % 1 1 15680
30 % 1 1 13425
Entity #6 | Chains: I
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.