Sequence Similarity Clusters for the Entities in PDB 4JJN

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21312
95 % 3 3 12025
90 % 116 140 105
70 % 117 141 116
50 % 119 144 140
40 % 119 144 157
30 % 119 144 173
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12894
95 % 4 4 6742
90 % 125 152 74
70 % 125 152 91
50 % 125 152 128
40 % 125 152 147
30 % 125 152 160
Entity #3 | Chains: C,G
Histone H2A.2 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42007
95 % 5 5 5917
90 % 5 5 5910
70 % 110 140 99
50 % 120 150 124
40 % 120 150 142
30 % 120 150 155
Entity #4 | Chains: D,H
Histone H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21440
95 % 4 4 9870
90 % 4 4 9750
70 % 110 134 124
50 % 110 134 154
40 % 110 134 170
30 % 110 134 186
Entity #5 | Chains: K,L
Regulatory protein SIR3 protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31403
95 % 1 1 25135
90 % 1 1 24317
70 % 1 1 22162
50 % 1 1 19149
40 % 1 1 16983
30 % 1 1 14511
Entity #6 | Chains: I
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.