POP-OUT | CLOSE

An Information Portal to 111558 Biological Macromolecular Structures

Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome
Sequence Clustering and Redundancy Reduction Results
4JJN
Sequence Clusters for the Sequence Entities in PDB 4JJN
Entity #1: Chains: A,E - Histone H3 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 18618
95% 3 3 10516
90% 88 103 127
70% 88 103 144
50% 90 106 166
40% 90 106 183
30% 90 106 199
Entity #2: Chains: B,F - Histone H4 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 11158
95% 4 4 5917
90% 93 111 114
70% 93 111 129
50% 93 111 155
40% 93 111 173
30% 93 111 187
Entity #3: Chains: C,G - Histone H2A.2 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 36908
95% 3 3 10547
90% 3 3 10389
70% 76 96 149
50% 82 102 167
40% 82 102 184
30% 82 102 200
Entity #4: Chains: D,H - Histone H2B.2 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 18729
95% 3 3 10556
90% 3 3 10398
70% 80 95 154
50% 80 95 187
40% 80 95 203
30% 80 95 219
Entity #5: Chains: K,L - Regulatory protein SIR3 protein, length: 382 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 27433
95% 1 1 22067
90% 1 1 21374
70% 1 1 19544
50% 1 1 16982
40% 1 1 15137
30% 1 1 12973
Entity #6: Chains: I - DNA (146-MER) dna, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: J - DNA (146-MER) dna, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.