Sequence Similarity Clusters for the Entities in PDB 4JJN

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21048
95 % 3 3 11895
90 % 116 140 105
70 % 117 141 116
50 % 119 144 139
40 % 119 144 156
30 % 119 144 173
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12730
95 % 4 4 6663
90 % 125 152 74
70 % 125 152 88
50 % 125 152 127
40 % 125 152 145
30 % 125 152 159
Entity #3 | Chains: C,G
Histone H2A.2 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41477
95 % 5 5 5844
90 % 5 5 5839
70 % 110 140 97
50 % 120 150 123
40 % 120 150 140
30 % 120 150 154
Entity #4 | Chains: D,H
Histone H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21172
95 % 4 4 9764
90 % 4 4 9642
70 % 110 134 123
50 % 110 134 151
40 % 110 134 166
30 % 110 134 183
Entity #5 | Chains: K,L
Regulatory protein SIR3 protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31018
95 % 1 1 24819
90 % 1 1 24014
70 % 1 1 21889
50 % 1 1 18922
40 % 1 1 16789
30 % 1 1 14348
Entity #6 | Chains: I
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.