Sequence Similarity Clusters for the Entities in PDB 4JJN

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22767
95 % 3 3 12807
90 % 126 154 78
70 % 127 155 93
50 % 129 158 128
40 % 129 158 145
30 % 129 158 160
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 13731
95 % 4 4 7250
90 % 135 166 73
70 % 135 166 86
50 % 135 166 122
40 % 135 166 140
30 % 135 166 154
Entity #3 | Chains: C,G
Histone H2A.2 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44636
95 % 5 5 6367
90 % 5 5 6347
70 % 121 155 89
50 % 131 165 116
40 % 131 165 138
30 % 131 165 150
Entity #4 | Chains: D,H
Histone H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22896
95 % 4 4 10542
90 % 4 4 10407
70 % 120 148 100
50 % 120 148 139
40 % 120 148 156
30 % 120 148 172
Entity #5 | Chains: K,L
Regulatory protein SIR3 protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33548
95 % 1 1 26840
90 % 1 1 25942
70 % 1 1 23543
50 % 1 1 20268
40 % 1 1 17979
30 % 1 1 15373
Entity #6 | Chains: I
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.