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Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome
Sequence Clustering and Redundancy Reduction Results
4JJN
Sequence Clusters for the Sequence Entities in PDB 4JJN
Entity #1: Chains: A,E - Histone H3 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 17985
95% 3 3 10184
90% 88 101 104
70% 88 101 123
50% 90 104 159
40% 90 104 181
30% 90 104 199
Entity #2: Chains: B,F - Histone H4 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 10765
95% 4 4 5730
90% 90 104 97
70% 90 104 115
50% 90 104 153
40% 90 104 176
30% 90 104 194
Entity #3: Chains: C,G - Histone H2A.2 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 35782
95% 3 3 10215
90% 3 3 10061
70% 76 95 124
50% 82 101 150
40% 82 101 175
30% 82 101 192
Entity #4: Chains: D,H - Histone H2B.2 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 18090
95% 3 3 10223
90% 3 3 10069
70% 80 94 128
50% 80 94 173
40% 80 94 194
30% 80 94 210
Entity #5: Chains: K,L - Regulatory protein SIR3 protein, length: 382 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 26518
95% 1 1 21354
90% 1 1 20707
70% 1 1 18986
50% 1 1 16521
40% 1 1 14732
30% 1 1 12632
Entity #6: Chains: I - DNA (146-MER) dna, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: J - DNA (146-MER) dna, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.