Sequence Similarity Clusters for the Entities in PDB 4JJN

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19856
95 % 3 3 11193
90 % 107 129 103
70 % 108 130 116
50 % 110 133 142
40 % 110 133 156
30 % 110 133 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 11909
95 % 4 4 6281
90 % 115 140 78
70 % 115 140 92
50 % 115 140 130
40 % 115 140 144
30 % 115 140 163
Entity #3 | Chains: C,G
Histone H2A.2 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39319
95 % 4 4 6214
90 % 4 4 6193
70 % 100 127 106
50 % 107 134 129
40 % 107 134 143
30 % 107 134 162
Entity #4 | Chains: D,H
Histone H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19975
95 % 3 3 11230
90 % 3 3 11056
70 % 100 122 128
50 % 100 122 155
40 % 100 122 169
30 % 100 122 185
Entity #5 | Chains: K,L
Regulatory protein SIR3 protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29304
95 % 1 1 23509
90 % 1 1 22749
70 % 1 1 20734
50 % 1 1 17965
40 % 1 1 15986
30 % 1 1 13687
Entity #6 | Chains: I
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.