Sequence Similarity Clusters for the Entities in PDB 4JJN

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20143
95 % 3 3 11396
90 % 111 133 105
70 % 112 134 116
50 % 114 137 141
40 % 114 137 155
30 % 114 137 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12130
95 % 4 4 6367
90 % 120 145 75
70 % 120 145 90
50 % 120 145 129
40 % 120 145 143
30 % 120 145 162
Entity #3 | Chains: C,G
Histone H2A.2 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39847
95 % 4 4 6298
90 % 4 4 6278
70 % 104 132 112
50 % 111 139 128
40 % 111 139 142
30 % 111 139 161
Entity #4 | Chains: D,H
Histone H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20264
95 % 3 3 11433
90 % 3 3 11248
70 % 104 127 125
50 % 104 127 152
40 % 104 127 169
30 % 104 127 185
Entity #5 | Chains: K,L
Regulatory protein SIR3 protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29718
95 % 1 1 23824
90 % 1 1 23045
70 % 1 1 21003
50 % 1 1 18191
40 % 1 1 16182
30 % 1 1 13840
Entity #6 | Chains: I
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.