Sequence Similarity Clusters for the Entities in PDB 4JJN

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23634
95 % 3 3 13275 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 133 167 79
70 % 134 168 94
50 % 136 172 122
40 % 136 172 144
30 % 136 172 152
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14280
95 % 4 4 7518 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.5
PDBFlex
90 % 142 181 68
70 % 142 181 83
50 % 142 181 113
40 % 142 181 138
30 % 142 181 143
Entity #3 | Chains: C,G
Histone H2A.2 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46220
95 % 5 5 6594 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 5 5 6579
70 % 128 170 88
50 % 138 180 110
40 % 138 180 137
30 % 138 180 142
Entity #4 | Chains: D,H
Histone H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23761
95 % 4 4 10923 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 4 10773
70 % 127 165 96
50 % 127 165 135
40 % 127 165 150
30 % 127 165 160
Entity #5 | Chains: K,L
Regulatory protein SIR3 protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34815
95 % 1 1 27789 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 26828
70 % 1 1 24275
50 % 1 1 20874
40 % 1 1 18509
30 % 1 1 15826
Entity #6 | Chains: I
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures