POP-OUT | CLOSE

An Information Portal to 107620 Biological Macromolecular Structures

Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome
Sequence Clustering and Redundancy Reduction Results
4JJN
Sequence Clusters for the Sequence Entities in PDB 4JJN
Entity #1: Chains: A,E - Histone H3 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 17869
95% 3 3 10120
90% 88 101 103
70% 88 101 123
50% 90 104 159
40% 90 104 181
30% 90 104 198
Entity #2: Chains: B,F - Histone H4 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 10690
95% 4 4 5693
90% 90 104 95
70% 90 104 114
50% 90 104 153
40% 90 104 176
30% 90 104 195
Entity #3: Chains: C,G - Histone H2A.2 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 35421
95% 3 3 10150
90% 3 3 9998
70% 76 95 124
50% 82 101 150
40% 82 101 174
30% 82 101 192
Entity #4: Chains: D,H - Histone H2B.2 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 17974
95% 3 3 10158
90% 3 3 10006
70% 80 94 128
50% 80 94 172
40% 80 94 193
30% 80 94 209
Entity #5: Chains: K,L - Regulatory protein SIR3 protein, length: 382 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 26298
95% 1 1 21164
90% 1 1 20512
70% 1 1 18792
50% 1 1 16362
40% 1 1 14591
30% 1 1 12510
Entity #6: Chains: I - DNA (146-MER) dna, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: J - DNA (146-MER) dna, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.