Sequence Similarity Clusters for the Entities in PDB 4JJN

Entity #1 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21500
95 % 3 3 12105
90 % 121 145 83
70 % 122 146 101
50 % 124 149 133
40 % 124 149 151
30 % 124 149 168
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12983
95 % 4 4 6784
90 % 130 157 73
70 % 130 157 86
50 % 130 157 124
40 % 130 157 141
30 % 130 157 157
Entity #3 | Chains: C,G
Histone H2A.2 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42417
95 % 5 5 5958
90 % 5 5 5949
70 % 115 145 94
50 % 125 155 120
40 % 125 155 139
30 % 125 155 154
Entity #4 | Chains: D,H
Histone H2B.2 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21629
95 % 4 4 9936
90 % 4 4 9815
70 % 115 139 120
50 % 115 139 145
40 % 115 139 161
30 % 115 139 179
Entity #5 | Chains: K,L
Regulatory protein SIR3 protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31734
95 % 1 1 25404
90 % 1 1 24579
70 % 1 1 22406
50 % 1 1 19362
40 % 1 1 17174
30 % 1 1 14700
Entity #6 | Chains: I
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
DNA (146-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.