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An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome
Sequence Clustering and Redundancy Reduction Results
4JJN
Sequence Clusters for the Sequence Entities in PDB 4JJN
Entity #1: Chains: A,E - Histone H3 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 17587
95% 3 3 9984
90% 87 100 88
70% 87 100 111
50% 89 103 143
40% 89 103 171
30% 89 103 192
Entity #2: Chains: B,F - Histone H4 protein, length: 102 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 10476
95% 4 4 5588
90% 89 103 81
70% 89 103 99
50% 89 103 137
40% 89 103 166
30% 89 103 188
Entity #3: Chains: C,G - Histone H2A.2 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 34929
95% 3 3 10013
90% 3 3 9867
70% 76 95 110
50% 82 101 134
40% 82 101 164
30% 82 101 186
Entity #4: Chains: D,H - Histone H2B.2 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 17691
95% 3 3 10021
90% 3 3 9875
70% 80 94 113
50% 80 94 155
40% 80 94 182
30% 80 94 202
Entity #5: Chains: K,L - Regulatory protein SIR3 protein, length: 382 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 25917
95% 1 1 20902
90% 1 1 20267
70% 1 1 18571
50% 1 1 16183
40% 1 1 14431
30% 1 1 12383
Entity #6: Chains: I - DNA (146-MER) dna, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: J - DNA (146-MER) dna, length: 147 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.