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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 75 Members. Sequence cutoff: 100% Cluster size: 130 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 40 1i, 2i 30S ribosomal protein S9 300852  
2 4W2F 9 AI, CI 30S Ribosomal Protein S9 300852  
3 4Y4P 40 1i, 2i 30S ribosomal protein S9 300852  
4 4W2G 9 AI, CI 30S Ribosomal Protein S9 300852  
5 4LFB 9 I ribosomal protein S9 300852  
6 1VY4 9 AI, CI 30S ribosomal protein S9 300852  
7 4W2I 9 AI, CI 30S Ribosomal Protein S9 300852  
8 1VY5 9 AI, CI 30S ribosomal protein S9 300852  
9 4WQF 42 BI, DI 30S ribosomal protein S9 300852  
10 4W2H 9 AI, CI 30S Ribosomal Protein S9 300852  
11 4WPO 42 BI, DI 30S ribosomal protein S9 300852  
12 4V8I 9 AI, CI 30S Ribosomal Protein S9 274  
13 4JI1 9 I RIBOSOMAL PROTEIN S9 300852  
14 4Z3S 40 1i, 2i 30S ribosomal protein S9 300852  
15 4Z3Q 40 1i, 2i 30S Ribosomal Protein S9 300852  
16 4DR6 9 I 30S ribosomal protein S9 300852  
17 4LF7 9 I ribosomal protein S9 300852  
18 4LF8 9 I ribosomal protein S9 300852  
19 4WSD 9 82, 8E 30S ribosomal protein S9 300852  
20 4WQU 42 BI, DI 30S ribosomal protein S9 300852  
21 4Z8C 40 1i, 2i 30S ribosomal protein S9 300852  
22 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 300852  
23 4DV6 9 I ribosomal protein S9 300852  
24 4DR5 9 I 30S ribosomal protein S9 300852  
25 4DR2 9 I 30S ribosomal protein S9 300852  
26 4WRO 13 8E 30S ribosomal protein S9 300852  
27 4WQ1 9 82, 8E 30S ribosomal protein S9 300852  
28 4LF9 9 I ribosomal protein S9 300852  
29 4WQY 42 BI, DI 30S ribosomal protein S9 300852  
30 4DUY 9 I ribosomal protein S9 300852  
31 4DV7 9 I ribosomal protein S9 300852  
32 4WRA 9 82, 8E 30S ribosomal protein S9 300852  
33 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
34 4DR3 9 I 30S ribosomal protein S9 300852  
35 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
36 4JI3 9 I RIBOSOMAL PROTEIN S9 300852  
37 4WQR 9 82, 8E 30S ribosomal protein S9 300852  
38 4JI6 9 I RIBOSOMAL PROTEIN S9 300852  
39 4JI8 9 I RIBOSOMAL PROTEIN S9 300852  
40 4V9R 9 AI, CI 30S Ribosomal Protein S9 274  
41 4LF4 9 I ribosomal protein S9 300852  
42 4LF6 9 I ribosomal protein S9 300852  
43 4JI7 9 I RIBOSOMAL PROTEIN S9 300852  
44 4WU1 9 82, 8E 30S ribosomal protein S9 300852  
45 4WR6 9 82, 8E 30S ribosomal protein S9 300852  
46 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
47 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 300852  
48 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 300852  
49 4V95 9 AI, CI 30S Ribosomal Protein S9 274  
50 1VY7 9 AI, CI 30S ribosomal protein S9 300852  
51 4LNT 9 QI, XI 30S ribosomal protein S9 300852  
52 4DR1 9 I 30S ribosomal protein S9 300852  
53 4LFA 9 I ribosomal protein S9 300852  
54 4DV4 9 I ribosomal protein S9 300852  
55 4JI0 9 I ribosomal protein S9 300852  
56 4V9S 9 AI, CI 30S Ribosomal Protein S9 274  
57 4JI2 9 I RIBOSOMAL PROTEIN S9 300852  
58 4DR7 9 I 30S ribosomal protein S9 300852  
59 4DUZ 9 I ribosomal protein S9 300852  
60 4V8G 9 AI, CI 30S Ribosomal Protein S9 300852  
61 4DV3 9 I ribosomal protein S9 300852  
62 4DV5 9 I ribosomal protein S9 300852  
63 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 300852  
64 4LFC 9 I ribosomal protein S9 300852  
65 4WZO 9 82, 8E 30S ribosomal protein S9 300852  
66 4JI4 9 I RIBOSOMAL PROTEIN S9 300852  
67 1VY6 9 AI, CI 30S ribosomal protein S9 300852  
68 4DV0 9 I ribosomal protein S9 300852  
69 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
70 4V6F 39 BL, CL 30S ribosomal protein S9 300852  
71 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 300852  
72 4DV2 9 I ribosomal protein S9 300852  
73 4DV1 9 I ribosomal protein S9 300852  
74 4V8H 9 AI, CI 30S Ribosomal Protein S9 300852  
75 4JI5 9 I RIBOSOMAL PROTEIN S9 300852  
76 4W2E 42 i 30S ribosomal protein S9 300852  
77 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 300852  
78 4LF5 9 I ribosomal protein S9 300852  
79 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
80 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 300852  
81 4DR4 9 I 30S ribosomal protein S9 300852  
82 4WZD 9 82, 8E 30S ribosomal protein S9 300852  
83 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 300852  
84 4NXM 9 I ribosomal protein S9 300852  
85 4ZER 40 1i, 2i 30S ribosomal protein S9 300852  
86 4WT1 9 82, 8E 30S ribosomal protein S9 300852  
87 4Z3R 40 1i, 2i 30S ribosomal protein S9 300852  
88 4NXN 9 I ribosomal protein S9 300852  
89 4LT8 9 QI, XI 30S ribosomal protein S9 300852  
90 4V7L 9 AI, CI 30S ribosomal protein S9 300852  
91 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
92 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
93 4V7J 8 Ai, Bi 30S ribosomal protein S9 300852  
94 4L47 9 QI, XI 30S ribosomal protein S9 300852  
95 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
96 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
97 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
98 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
99 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
100 4V97 9 AI, CI 30S ribosomal protein S9 300852  
101 4V7M 9 AI, CI 30S ribosomal protein S9 300852  
102 4WSM 9 82, 8E 30S ribosomal protein S9 300852  
103 4TUD 9 QI, XI 30S ribosomal protein S9 300852  
104 4V6A 9 AI, CI 30S ribosomal protein S9 300852  
105 4TUE 9 QI, XI 30S ribosomal protein S9 300852  
106 4TUA 9 QI, XI 30S ribosomal protein S9 300852  
107 4V7K 8 Ai, Bi 30S ribosomal protein S9 300852  
108 4TUC 9 QI, XI 30S ribosomal protein S9 300852  
109 4YHH 9 I 30S ribosomal protein S9 300852  
110 4TUB 9 QI, XI 30S ribosomal protein S9 300852  
111 4P70 9 QI, XI 30S ribosomal protein S9 300852  
112 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
113 4LSK 9 QI, XI 30S ribosomal protein S9 300852  
114 4P6F 9 QI, XI 30S ribosomal protein S9 300852  
115 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
116 1VVJ 9 QI, XI 30S ribosomal protein S9 300852  
117 4LFZ 9 QI, XI 30S ribosomal protein S9 300852  
118 4OX9 9 I 30S ribosomal protein S9 300852  
119 4L71 9 QI, XI 30S ribosomal protein S9 300852  
120 4V8J 9 AI, CI 30S ribosomal protein S9 300852  
121 4LEL 9 QI, XI 30S ribosomal protein S9 300852  
122 4V9L 8 AI, CI 30S ribosomal protein S9 262724  
123 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
124 4V9M 8 AI, CI 30S ribosomal protein S9 262724  
125 4W29 8 AI, CI 30S ribosomal protein S9 262724  
126 4V4Y 11 AL 30S ribosomal protein S9 300852  
127 4V4X 11 AL 30S ribosomal protein S9 300852  
128 4V4Z 12 AL 30S ribosomal protein S9 300852  
129 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
130 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 218 36
95% 43 219 50
90% 43 219 54
70% 43 219 65
50% 54 306 31
40% 54 306 42
30% 59 359 42
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 34
95% 43 220 46
90% 43 220 50
70% 43 220 60
50% 48 300 42
40% 55 360 31
30% 55 361 41
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18311
95% 43 227 27
90% 43 227 32
70% 48 311 21
50% 48 312 30
40% 48 312 41
30% 48 312 56
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 221 32
95% 43 221 44
90% 43 221 48
70% 43 221 58
50% 48 305 38
40% 48 305 50
30% 53 360 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 35
95% 43 219 51
90% 43 219 55
70% 43 220 63
50% 43 220 92
40% 43 220 113
30% 43 220 126
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 223 28
95% 45 228 25
90% 45 228 29
70% 45 228 41
50% 53 313 28
40% 53 314 39
30% 53 314 55
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 215 37
95% 43 220 48
90% 43 220 52
70% 43 220 62
50% 43 220 91
40% 43 221 112
30% 48 303 69
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 134 59
95% 43 214 56
90% 43 218 57
70% 43 218 67
50% 43 218 94
40% 43 218 116
30% 43 218 128
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 145 55
95% 40 194 64
90% 40 194 66
70% 40 194 78
50% 40 194 111
40% 40 194 130
30% 40 194 149
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 223 27
95% 44 223 40
90% 44 223 45
70% 44 223 55
50% 49 303 36
40% 49 303 47
30% 49 303 66
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 30
95% 43 221 41
90% 43 221 46
70% 43 221 56
50% 48 299 41
40% 48 300 51
30% 48 300 68
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 170 49
95% 43 219 49
90% 43 219 53
70% 43 219 64
50% 43 219 93
40% 43 219 114
30% 43 219 127
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 210 39
95% 43 210 59
90% 43 210 62
70% 43 210 72
50% 43 210 98
40% 43 210 120
30% 43 210 133
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 193 45
95% 40 193 65
90% 40 193 67
70% 40 193 79
50% 41 236 78
40% 41 236 99
30% 41 236 119
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 213 38
95% 43 221 42
90% 43 221 47
70% 43 221 57
50% 48 300 39
40% 48 301 49
30% 48 301 67
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 33
95% 43 220 45
90% 43 220 49
70% 43 220 59
50% 49 304 35
40% 49 304 46
30% 49 306 64
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 225 24
95% 50 231 23
90% 50 231 28
70% 50 231 39
50% 50 231 82
40% 50 231 104
30% 56 270 78
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 224 26
95% 44 225 38
90% 44 225 42
70% 44 225 52
50% 49 268 50
40% 49 269 60
30% 49 269 80
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 220 31
95% 44 220 43
90% 44 224 43
70% 44 224 53
50% 51 306 33
40% 52 308 43
30% 58 364 40
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 130 75
95% 43 220 47
90% 43 220 51
70% 43 220 61
50% 48 300 43
40% 48 300 52
30% 53 355 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.