Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 252 35
95 % 56 253 48
90 % 56 253 53
70 % 56 253 63
50 % 68 348 28
40 % 68 348 38
30 % 73 420 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 33
95 % 56 254 44
90 % 56 254 49
70 % 56 254 58
50 % 62 342 36
40 % 69 421 22
30 % 69 422 35
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20207
95 % 56 261 35
90 % 56 261 39
70 % 62 353 23
50 % 62 354 27
40 % 62 354 37
30 % 62 354 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 30
95 % 56 255 41
90 % 56 255 46
70 % 56 255 55
50 % 62 347 33
40 % 62 347 45
30 % 67 421 41
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 253 34
95 % 56 253 49
90 % 56 253 54
70 % 56 254 61
50 % 56 254 86
40 % 56 254 107
30 % 56 254 119
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 257 27
95 % 58 262 34
90 % 58 262 38
70 % 58 262 49
50 % 67 355 26
40 % 67 356 36
30 % 67 356 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 249 36
95 % 56 254 46
90 % 56 254 51
70 % 56 254 60
50 % 56 254 85
40 % 56 255 106
30 % 62 345 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 161 57
95 % 56 248 50
90 % 56 252 55
70 % 56 252 64
50 % 56 252 88
40 % 56 252 109
30 % 56 252 122
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 168 56
95 % 50 219 63
90 % 50 219 68
70 % 50 219 78
50 % 50 219 108
40 % 50 219 130
30 % 50 219 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 257 26
95 % 57 257 37
90 % 57 257 43
70 % 57 257 52
50 % 63 345 31
40 % 63 345 42
30 % 63 345 60
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 28
95 % 56 255 38
90 % 56 255 44
70 % 56 255 53
50 % 62 341 35
40 % 62 342 47
30 % 62 342 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 202 47
95 % 56 253 47
90 % 56 253 52
70 % 56 253 62
50 % 56 253 87
40 % 56 253 108
30 % 56 253 121
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 244 38
95 % 56 244 54
90 % 56 244 57
70 % 56 244 68
50 % 56 244 92
40 % 56 244 115
30 % 56 244 129
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 218 44
95 % 50 218 64
90 % 50 218 69
70 % 50 218 79
50 % 52 269 79
40 % 52 269 98
30 % 52 269 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 247 37
95 % 56 255 39
90 % 56 255 45
70 % 56 255 54
50 % 62 342 34
40 % 62 343 44
30 % 62 343 61
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 32
95 % 56 254 43
90 % 56 254 48
70 % 56 254 57
50 % 63 346 30
40 % 63 346 41
30 % 63 348 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 259 24
95 % 63 265 33
90 % 63 265 36
70 % 63 265 44
50 % 63 265 82
40 % 63 265 101
30 % 69 304 78
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 258 25
95 % 57 259 36
90 % 57 259 41
70 % 57 259 50
50 % 62 304 51
40 % 62 305 64
30 % 62 305 87
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 254 29
95 % 57 254 40
90 % 57 258 42
70 % 57 258 51
50 % 65 348 29
40 % 66 350 39
30 % 72 425 33
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 163 72
95 % 56 254 45
90 % 56 254 50
70 % 56 254 59
50 % 62 342 37
40 % 62 342 48
30 % 67 416 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 40 1i, 2i 30S ribosomal protein S9 274
2 5J8B 42 i 30S ribosomal protein S9 274
3 4W2F 9 AI, CI 30S Ribosomal Protein S9 274
4 4Y4P 40 1i, 2i 30S ribosomal protein S9 274
5 5FDV 41 1i, 2i 30S ribosomal protein S9 274
6 5J4B 40 1i, 2i 30S ribosomal protein S9 274
7 4W2G 9 AI, CI 30S Ribosomal Protein S9 274
8 4LFB 9 I ribosomal protein S9 274
9 1VY4 9 AI, CI 30S ribosomal protein S9 274
10 5FDU 40 1i, 2i 30S ribosomal protein S9 274
11 4W2I 9 AI, CI 30S Ribosomal Protein S9 274
12 1VY5 9 AI, CI 30S ribosomal protein S9 274
13 5HCQ 40 1i, 2i 30S ribosomal protein S9 274
14 4WQF 42 BI, DI 30S ribosomal protein S9 274
15 4W2H 9 AI, CI 30S Ribosomal Protein S9 274
16 4WPO 42 BI, DI 30S ribosomal protein S9 274
17 4V8I 9 AI, CI 30S Ribosomal Protein S9 274
18 4JI1 9 I RIBOSOMAL PROTEIN S9 274
19 4Z3S 40 1i, 2i 30S ribosomal protein S9 274
20 5DOY 40 1i, 2i 30S Ribosomal Protein S9 274
21 5HD1 40 1i, 2i 30S ribosomal protein S9 274
22 4DR6 9 I 30S ribosomal protein S9 274
23 4LF7 9 I ribosomal protein S9 274
24 4LF8 9 I ribosomal protein S9 274
25 4WSD 9 82, 8E 30S ribosomal protein S9 274
26 4WQU 42 BI, DI 30S ribosomal protein S9 274
27 5E81 9 82, 8E 30S ribosomal protein S9 274
28 4Z8C 40 1i, 2i 30S ribosomal protein S9 274
29 5HCR 40 1i, 2i 30S ribosomal protein S9 274
30 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 274
31 4DV6 9 I ribosomal protein S9 274
32 5IBB 9 82, 8E 30S ribosomal protein S9 274
33 4DR5 9 I 30S ribosomal protein S9 274
34 5J4C 40 1i, 2i 30S ribosomal protein S9 274
35 4DR2 9 I 30S ribosomal protein S9 274
36 4WRO 13 8E 30S ribosomal protein S9 274
37 4WQ1 9 82, 8E 30S ribosomal protein S9 274
38 4LF9 9 I ribosomal protein S9 274
39 4WQY 42 BI, DI 30S ribosomal protein S9 274
40 4DUY 9 I ribosomal protein S9 274
41 4DV7 9 I ribosomal protein S9 274
42 4WRA 9 82, 8E 30S ribosomal protein S9 274
43 5IB7 9 82, 8E 30S ribosomal protein S9 274
44 4X64 9 I 30S ribosomal protein S9 274
45 5HCP 40 1i, 2i 30S ribosomal protein S9 274
46 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
47 4DR3 9 I 30S ribosomal protein S9 274
48 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 274
49 4JI3 9 I RIBOSOMAL PROTEIN S9 274
50 4WQR 9 82, 8E 30S ribosomal protein S9 274
51 4JI6 9 I RIBOSOMAL PROTEIN S9 274
52 4JI8 9 I RIBOSOMAL PROTEIN S9 274
53 5IB8 9 82, 8E 30S ribosomal protein S9 274
54 4V9R 9 AI, CI 30S Ribosomal Protein S9 274
55 5EL6 9 82, 8E 30S ribosomal protein S9 274
56 5EL7 9 82, 8E 30S ribosomal protein S9 274
57 4LF4 9 I ribosomal protein S9 274
58 4LF6 9 I ribosomal protein S9 274
59 4JI7 9 I RIBOSOMAL PROTEIN S9 274
60 4WU1 9 82, 8E 30S ribosomal protein S9 274
61 5EL4 9 82, 8E 30S ribosomal protein S9 274
62 4WR6 9 82, 8E 30S ribosomal protein S9 274
63 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
64 5HAU 42 1i, 2i 30S ribosomal protein S9 274
65 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 274
66 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
67 4V95 9 AI, CI 30S Ribosomal Protein S9 274
68 1VY7 9 AI, CI 30S ribosomal protein S9 274
69 5E7K 9 82, 8E 30S ribosomal protein S9 274
70 5EL5 9 82, 8E 30S ribosomal protein S9 274
71 4LNT 9 QI, XI 30S ribosomal protein S9 274
72 4DR1 9 I 30S ribosomal protein S9 274
73 4LFA 9 I ribosomal protein S9 274
74 4DV4 9 I ribosomal protein S9 274
75 4YZV 9 QI, XI 30S ribosomal protein S9 274
76 4JI0 9 I ribosomal protein S9 274
77 5IWA 8 I 30S ribosomal protein S9 274
78 4V9S 9 AI, CI 30S Ribosomal Protein S9 274
79 4JI2 9 I RIBOSOMAL PROTEIN S9 274
80 4DR7 9 I 30S ribosomal protein S9 274
81 4DUZ 9 I ribosomal protein S9 274
82 4X65 9 I 30S ribosomal protein S9 274
83 4V8G 9 AI, CI 30S Ribosomal Protein S9 274
84 4DV3 9 I ribosomal protein S9 274
85 4DV5 9 I ribosomal protein S9 274
86 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 274
87 4LFC 9 I ribosomal protein S9 274
88 4WZO 9 82, 8E 30S ribosomal protein S9 274
89 4JI4 9 I RIBOSOMAL PROTEIN S9 274
90 1VY6 9 AI, CI 30S ribosomal protein S9 274
91 4DV0 9 I ribosomal protein S9 274
92 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
93 4V6F 39 BL, CL 30S ribosomal protein S9 274
94 4X62 9 I 30S ribosomal protein S9 274
95 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
96 4DV2 9 I ribosomal protein S9 274
97 4DV1 9 I ribosomal protein S9 274
98 5F8K 40 1i, 2i 30S ribosomal protein S9 274
99 4V8H 9 AI, CI 30S Ribosomal Protein S9 274
100 4JI5 9 I RIBOSOMAL PROTEIN S9 274
101 4W2E 42 i 30S ribosomal protein S9 274
102 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 274
103 5BR8 9 I 30S ribosomal protein S9 274
104 4LF5 9 I ribosomal protein S9 274
105 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
106 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 274
107 4DR4 9 I 30S ribosomal protein S9 274
108 4WZD 9 82, 8E 30S ribosomal protein S9 274
109 4X66 9 I 30S ribosomal protein S9 274
110 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 274
111 4W4G 9 QI, XI 30S ribosomal protein S9 274
112 4NXM 9 I ribosomal protein S9 274
113 4YPB 9 QI, XI 30S ribosomal protein S9 274
114 4ZER 40 1i, 2i 30S ribosomal protein S9 274
115 4WT1 9 82, 8E 30S ribosomal protein S9 274
116 5DOX 40 1i, 2i 30S ribosomal protein S9 274
117 4NXN 9 I ribosomal protein S9 274
118 4LT8 9 QI, XI 30S ribosomal protein S9 274
119 4V7L 9 AI, CI 30S ribosomal protein S9 274
120 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
121 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
122 4V7J 8 Ai, Bi 30S ribosomal protein S9 274
123 4L47 9 QI, XI 30S ribosomal protein S9 274
124 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
125 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
126 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
127 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
128 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
129 4V97 9 AI, CI 30S ribosomal protein S9 274
130 4V7M 9 AI, CI 30S ribosomal protein S9 274
131 4WSM 9 82, 8E 30S ribosomal protein S9 274
132 4TUD 9 QI, XI 30S ribosomal protein S9 274
133 4V6A 9 AI, CI 30S ribosomal protein S9 274
134 4TUE 9 QI, XI 30S ribosomal protein S9 274
135 4TUA 9 QI, XI 30S ribosomal protein S9 274
136 4V7K 8 Ai, Bi 30S ribosomal protein S9 274
137 4TUC 9 QI, XI 30S ribosomal protein S9 274
138 4YHH 9 I 30S ribosomal protein S9 274
139 4TUB 9 QI, XI 30S ribosomal protein S9 274
140 4P70 9 QI, XI 30S ribosomal protein S9 274
141 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
142 4LSK 9 QI, XI 30S ribosomal protein S9 274
143 4P6F 9 QI, XI 30S ribosomal protein S9 274
144 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
145 1VVJ 9 QI, XI 30S ribosomal protein S9 274
146 4LFZ 9 QI, XI 30S ribosomal protein S9 274
147 4OX9 9 I 30S ribosomal protein S9 274
148 4L71 9 QI, XI 30S ribosomal protein S9 274
149 4V8J 9 AI, CI 30S ribosomal protein S9 274
150 4LEL 9 QI, XI 30S ribosomal protein S9 274
151 4V9L 8 AI, CI 30S ribosomal protein S9 274
152 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
153 4V9M 8 AI, CI 30S ribosomal protein S9 274
154 4W29 8 AI, CI 30S ribosomal protein S9 274
155 4V4Y 11 AL 30S ribosomal protein S9 274
156 4V4X 11 AL 30S ribosomal protein S9 274
157 4V4Z 12 AL 30S ribosomal protein S9 274
158 5IMQ 16 M 30S ribosomal protein S9 274
159 5IMR 9 M 30S ribosomal protein S9 274
160 5A9Z 42 BM 30S ribosomal protein S9 274
161 5AA0 42 BM 30S ribosomal protein S9 274
162 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 274
163 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 274