Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 268 39
95 % 56 269 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 56 269 58
70 % 56 269 68
50 % 74 419 26
40 % 74 419 38
30 % 80 525 31
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 270 35
95 % 56 270 49
90 % 56 270 54
70 % 56 270 64
50 % 68 413 32
40 % 76 525 19
30 % 76 525 32
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22522
95 % 56 277 40
90 % 56 277 45
70 % 68 420 19
50 % 68 430 24
40 % 68 430 36
30 % 68 430 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 271 33
95 % 56 271 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 56 271 52
70 % 56 271 62
50 % 68 417 31
40 % 68 417 46
30 % 74 523 34
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 269 38
95 % 56 269 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 56 269 59
70 % 56 277 55
50 % 56 277 91
40 % 56 277 115
30 % 56 277 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 273 30
95 % 58 278 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 58 278 43
70 % 58 278 53
50 % 73 426 25
40 % 73 431 35
30 % 73 431 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 265 41
95 % 56 270 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 56 270 56
70 % 56 270 66
50 % 56 277 90
40 % 56 277 114
30 % 68 412 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 177 58
95 % 56 264 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 56 268 60
70 % 56 268 69
50 % 56 268 94
40 % 56 268 118
30 % 56 268 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 184 56
95 % 50 235 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 50 235 70
70 % 50 235 82
50 % 50 235 111
40 % 50 235 135
30 % 50 235 143
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 273 29
95 % 57 273 42
90 % 57 273 48
70 % 57 273 59
50 % 69 419 28
40 % 69 422 40
30 % 69 422 56
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 270 31
95 % 56 271 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 56 271 50
70 % 56 271 60
50 % 68 408 36
40 % 68 413 45
30 % 68 413 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 218 50
95 % 56 269 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 56 269 57
70 % 56 269 67
50 % 56 269 93
40 % 56 269 116
30 % 56 269 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 260 43
95 % 56 260 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 56 260 63
70 % 56 260 74
50 % 56 260 98
40 % 56 260 121
30 % 56 260 133
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 234 48
95 % 50 234 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 50 234 71
70 % 50 234 83
50 % 52 308 84
40 % 52 308 103
30 % 52 308 116
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 263 42
95 % 56 271 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 56 271 51
70 % 56 271 61
50 % 68 414 30
40 % 68 419 41
30 % 68 419 57
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 270 34
95 % 56 270 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 56 270 53
70 % 56 270 63
50 % 69 416 29
40 % 69 416 42
30 % 69 418 61
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 275 27
95 % 63 281 37
90 % 63 281 42
70 % 63 281 51
50 % 63 281 88
40 % 63 281 110
30 % 75 353 93
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 274 28
95 % 57 275 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 57 275 46
70 % 57 275 56
50 % 68 354 68
40 % 68 359 85
30 % 68 359 95
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 270 32
95 % 57 270 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 57 274 47
70 % 57 274 57
50 % 71 419 27
40 % 72 425 37
30 % 79 538 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 179 68
95 % 56 270 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 56 270 55
70 % 56 270 65
50 % 68 410 35
40 % 68 410 48
30 % 74 520 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 40 1i, 2i 30S ribosomal protein S9 274
2 5J8B 42 i 30S ribosomal protein S9 274
3 4W2F 9 AI, CI 30S Ribosomal Protein S9 274
4 4Y4P 40 1i, 2i 30S ribosomal protein S9 274
5 5FDV 41 1i, 2i 30S ribosomal protein S9 274
6 5J4B 40 1i, 2i 30S ribosomal protein S9 274
7 4W2G 9 AI, CI 30S Ribosomal Protein S9 274
8 4LFB 9 I ribosomal protein S9 274
9 1VY4 9 AI, CI 30S ribosomal protein S9 274
10 5FDU 40 1i, 2i 30S ribosomal protein S9 274
11 4W2I 9 AI, CI 30S Ribosomal Protein S9 274
12 1VY5 9 AI, CI 30S ribosomal protein S9 274
13 5HCQ 40 1i, 2i 30S ribosomal protein S9 274
14 4WQF 42 BI, DI 30S ribosomal protein S9 274
15 4W2H 9 AI, CI 30S Ribosomal Protein S9 274
16 4WPO 42 BI, DI 30S ribosomal protein S9 274
17 4V8I 9 AI, CI 30S Ribosomal Protein S9 274
18 4JI1 9 I RIBOSOMAL PROTEIN S9 274
19 4Z3S 40 1i, 2i 30S ribosomal protein S9 274
20 5DOY 40 1i, 2i 30S Ribosomal Protein S9 274
21 5HD1 40 1i, 2i 30S ribosomal protein S9 274
22 4DR6 9 I 30S ribosomal protein S9 274
23 4LF7 9 I ribosomal protein S9 274
24 4LF8 9 I ribosomal protein S9 274
25 4WSD 9 82, 8E 30S ribosomal protein S9 274
26 4WQU 42 BI, DI 30S ribosomal protein S9 274
27 5E81 9 82, 8E 30S ribosomal protein S9 274
28 4Z8C 40 1i, 2i 30S ribosomal protein S9 274
29 5HCR 40 1i, 2i 30S ribosomal protein S9 274
30 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 274
31 4DV6 9 I ribosomal protein S9 274
32 5IBB 9 82, 8E 30S ribosomal protein S9 274
33 4DR5 9 I 30S ribosomal protein S9 274
34 5J4C 40 1i, 2i 30S ribosomal protein S9 274
35 4DR2 9 I 30S ribosomal protein S9 274
36 4WRO 13 8E 30S ribosomal protein S9 274
37 4WQ1 9 82, 8E 30S ribosomal protein S9 274
38 4LF9 9 I ribosomal protein S9 274
39 4WQY 42 BI, DI 30S ribosomal protein S9 274
40 4DUY 9 I ribosomal protein S9 274
41 4DV7 9 I ribosomal protein S9 274
42 4WRA 9 82, 8E 30S ribosomal protein S9 274
43 5IB7 9 82, 8E 30S ribosomal protein S9 274
44 4X64 9 I 30S ribosomal protein S9 274
45 5HCP 40 1i, 2i 30S ribosomal protein S9 274
46 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
47 4DR3 9 I 30S ribosomal protein S9 274
48 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 274
49 4JI3 9 I RIBOSOMAL PROTEIN S9 274
50 4WQR 9 82, 8E 30S ribosomal protein S9 274
51 4JI6 9 I RIBOSOMAL PROTEIN S9 274
52 4JI8 9 I RIBOSOMAL PROTEIN S9 274
53 5IB8 9 82, 8E 30S ribosomal protein S9 274
54 4V9R 9 AI, CI 30S Ribosomal Protein S9 274
55 5EL6 9 82, 8E 30S ribosomal protein S9 274
56 5EL7 9 82, 8E 30S ribosomal protein S9 274
57 5VP2 40 1i, 2i 30S ribosomal protein S9 274
58 4LF4 9 I ribosomal protein S9 274
59 5DFE 43 QI, XI 30S ribosomal protein S9 274
60 4LF6 9 I ribosomal protein S9 274
61 4JI7 9 I RIBOSOMAL PROTEIN S9 274
62 4WU1 9 82, 8E 30S ribosomal protein S9 274
63 5EL4 9 82, 8E 30S ribosomal protein S9 274
64 4WR6 9 82, 8E 30S ribosomal protein S9 274
65 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
66 5HAU 42 1i, 2i 30S ribosomal protein S9 274
67 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 274
68 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
69 4V95 9 AI, CI 30S Ribosomal Protein S9 274
70 1VY7 9 AI, CI 30S ribosomal protein S9 274
71 5E7K 9 82, 8E 30S ribosomal protein S9 274
72 5EL5 9 82, 8E 30S ribosomal protein S9 274
73 4LNT 9 QI, XI 30S ribosomal protein S9 274
74 4DR1 9 I 30S ribosomal protein S9 274
75 4LFA 9 I ribosomal protein S9 274
76 4DV4 9 I ribosomal protein S9 274
77 4YZV 9 QI, XI 30S ribosomal protein S9 274
78 4JI0 9 I ribosomal protein S9 274
79 5IWA 8 I 30S ribosomal protein S9 274
80 4V9S 9 AI, CI 30S Ribosomal Protein S9 274
81 4JI2 9 I RIBOSOMAL PROTEIN S9 274
82 4DR7 9 I 30S ribosomal protein S9 274
83 4DUZ 9 I ribosomal protein S9 274
84 4X65 9 I 30S ribosomal protein S9 274
85 4V8G 9 AI, CI 30S Ribosomal Protein S9 274
86 4DV3 9 I ribosomal protein S9 274
87 4DV5 9 I ribosomal protein S9 274
88 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 274
89 4LFC 9 I ribosomal protein S9 274
90 4WZO 9 82, 8E 30S ribosomal protein S9 274
91 4JI4 9 I RIBOSOMAL PROTEIN S9 274
92 1VY6 9 AI, CI 30S ribosomal protein S9 274
93 4DV0 9 I ribosomal protein S9 274
94 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
95 4V6F 39 BL, CL 30S ribosomal protein S9 274
96 4X62 9 I 30S ribosomal protein S9 274
97 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
98 4DV2 9 I ribosomal protein S9 274
99 4DV1 9 I ribosomal protein S9 274
100 5F8K 40 1i, 2i 30S ribosomal protein S9 274
101 4V8H 9 AI, CI 30S Ribosomal Protein S9 274
102 4JI5 9 I RIBOSOMAL PROTEIN S9 274
103 4W2E 42 i 30S ribosomal protein S9 274
104 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 274
105 5BR8 9 I 30S ribosomal protein S9 274
106 4LF5 9 I ribosomal protein S9 274
107 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
108 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 274
109 5J30 40 QI, XI 30S ribosomal protein S9 274
110 4DR4 9 I 30S ribosomal protein S9 274
111 4WZD 9 82, 8E 30S ribosomal protein S9 274
112 4X66 9 I 30S ribosomal protein S9 274
113 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 274
114 4W4G 9 QI, XI 30S ribosomal protein S9 274
115 4NXM 9 I ribosomal protein S9 274
116 4YPB 9 QI, XI 30S ribosomal protein S9 274
117 4ZER 40 1i, 2i 30S ribosomal protein S9 274
118 4WT1 9 82, 8E 30S ribosomal protein S9 274
119 5DOX 40 1i, 2i 30S ribosomal protein S9 274
120 4NXN 9 I ribosomal protein S9 274
121 4LT8 9 QI, XI 30S ribosomal protein S9 274
122 4V7L 9 AI, CI 30S ribosomal protein S9 274
123 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
124 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
125 4V7J 8 Ai, Bi 30S ribosomal protein S9 274
126 5J3C 40 QI, XI 30S ribosomal protein S9 274
127 4L47 9 QI, XI 30S ribosomal protein S9 274
128 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
129 4ZSN 9 QI, XI 30S ribosomal protein S9 274
130 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
131 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
132 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
133 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
134 4V97 9 AI, CI 30S ribosomal protein S9 274
135 4V7M 9 AI, CI 30S ribosomal protein S9 274
136 4WSM 9 82, 8E 30S ribosomal protein S9 274
137 4TUD 9 QI, XI 30S ribosomal protein S9 274
138 4V6A 9 AI, CI 30S ribosomal protein S9 274
139 4TUE 9 QI, XI 30S ribosomal protein S9 274
140 4TUA 9 QI, XI 30S ribosomal protein S9 274
141 4V7K 8 Ai, Bi 30S ribosomal protein S9 274
142 4YY3 9 I 30S ribosomal protein S9 274
143 4TUC 9 QI, XI 30S ribosomal protein S9 274
144 4YHH 9 I 30S ribosomal protein S9 274
145 4TUB 9 QI, XI 30S ribosomal protein S9 274
146 4P70 9 QI, XI 30S ribosomal protein S9 274
147 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
148 4LSK 9 QI, XI 30S ribosomal protein S9 274
149 4P6F 9 QI, XI 30S ribosomal protein S9 274
150 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
151 1VVJ 9 QI, XI 30S ribosomal protein S9 274
152 4LFZ 9 QI, XI 30S ribosomal protein S9 274
153 5CZP 40 QI, XI 30S ribosomal protein S9 274
154 4OX9 9 I 30S ribosomal protein S9 274
155 4L71 9 QI, XI 30S ribosomal protein S9 274
156 4V8J 9 AI, CI 30S ribosomal protein S9 274
157 4LEL 9 QI, XI 30S ribosomal protein S9 274
158 4V9L 8 AI, CI 30S ribosomal protein S9 274
159 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
160 4V9M 8 AI, CI 30S ribosomal protein S9 274
161 4W29 8 AI, CI 30S ribosomal protein S9 274
162 4V4Y 11 AL 30S ribosomal protein S9 274
163 4V4X 11 AL 30S ribosomal protein S9 274
164 4V4Z 12 AL 30S ribosomal protein S9 274
165 5LMN 9 I 30S ribosomal protein S9 Uniprot code P80374 274
166 5LMO 9 I 30S ribosomal protein S9 274
167 5LMP 9 I 30S ribosomal protein S9 274
168 5LMQ 9 I 30S ribosomal protein S9 274
169 5LMR 9 I 30S ribosomal protein S9 274
170 5LMS 9 I 30S ribosomal protein S9 274
171 5LMT 9 I 30S ribosomal protein S9 274
172 5LMU 9 I 30S ribosomal protein S9 274
173 5LMV 9 I 30S ribosomal protein S9 274
174 5IMQ 16 M 30S ribosomal protein S9 274
175 5IMR 9 M 30S ribosomal protein S9 274
176 5A9Z 42 BM 30S ribosomal protein S9 274
177 5AA0 42 BM 30S ribosomal protein S9 274
178 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 274
179 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 274