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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 76 Members. Sequence cutoff: 100% Cluster size: 102 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 9 AI, CI 30S Ribosomal Protein S9 300852  
2 4W2G 9 AI, CI 30S Ribosomal Protein S9 300852  
3 4LFB 9 I ribosomal protein S9 300852  
4 1VY4 9 AI, CI 30S ribosomal protein S9 300852  
5 4W2I 9 AI, CI 30S Ribosomal Protein S9 300852  
6 1VY5 9 AI, CI 30S ribosomal protein S9 300852  
7 4W2H 9 AI, CI 30S Ribosomal Protein S9 300852  
8 4V8I 9 AI, CI 30S Ribosomal Protein S9 274  
9 4JI1 9 I RIBOSOMAL PROTEIN S9 300852  
10 4DR6 9 I 30S ribosomal protein S9 300852  
11 4LF7 9 I ribosomal protein S9 300852  
12 4LF8 9 I ribosomal protein S9 300852  
13 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 300852  
14 4DV6 9 I ribosomal protein S9 300852  
15 4DR5 9 I 30S ribosomal protein S9 300852  
16 4DR2 9 I 30S ribosomal protein S9 300852  
17 4LF9 9 I ribosomal protein S9 300852  
18 4DUY 9 I ribosomal protein S9 300852  
19 4DV7 9 I ribosomal protein S9 300852  
20 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
21 4DR3 9 I 30S ribosomal protein S9 300852  
22 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
23 4JI3 9 I RIBOSOMAL PROTEIN S9 300852  
24 4JI6 9 I RIBOSOMAL PROTEIN S9 300852  
25 4JI8 9 I RIBOSOMAL PROTEIN S9 300852  
26 4V9R 9 AI, CI 30S Ribosomal Protein S9 274  
27 4LF4 9 I ribosomal protein S9 300852  
28 4LF6 9 I ribosomal protein S9 300852  
29 4JI7 9 I RIBOSOMAL PROTEIN S9 300852  
30 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
31 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 300852  
32 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 300852  
33 4V95 9 AI, CI 30S Ribosomal Protein S9 274  
34 1VY7 9 AI, CI 30S ribosomal protein S9 300852  
35 4LNT 9 QI, XI 30S ribosomal protein S9 300852  
36 4DR1 9 I 30S ribosomal protein S9 300852  
37 4LFA 9 I ribosomal protein S9 300852  
38 4DV4 9 I ribosomal protein S9 300852  
39 4JI0 9 I ribosomal protein S9 300852  
40 4V9S 9 AI, CI 30S Ribosomal Protein S9 274  
41 4JI2 9 I RIBOSOMAL PROTEIN S9 300852  
42 4DR7 9 I 30S ribosomal protein S9 300852  
43 4DUZ 9 I ribosomal protein S9 300852  
44 4V8G 9 AI, CI 30S Ribosomal Protein S9 300852  
45 4DV3 9 I ribosomal protein S9 300852  
46 4DV5 9 I ribosomal protein S9 300852  
47 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 300852  
48 4LFC 9 I ribosomal protein S9 300852  
49 4JI4 9 I RIBOSOMAL PROTEIN S9 300852  
50 1VY6 9 AI, CI 30S ribosomal protein S9 300852  
51 4DV0 9 I ribosomal protein S9 300852  
52 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
53 4V6F 39 BL, CL 30S ribosomal protein S9 300852  
54 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 300852  
55 4DV2 9 I ribosomal protein S9 300852  
56 4DV1 9 I ribosomal protein S9 300852  
57 4V8H 9 AI, CI 30S Ribosomal Protein S9 300852  
58 4JI5 9 I RIBOSOMAL PROTEIN S9 300852  
59 4W2E 42 i 30S ribosomal protein S9 300852  
60 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 300852  
61 4LF5 9 I ribosomal protein S9 300852  
62 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
63 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 300852  
64 4DR4 9 I 30S ribosomal protein S9 300852  
65 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 300852  
66 4NXM 9 I ribosomal protein S9 300852  
67 4NXN 9 I ribosomal protein S9 300852  
68 4LT8 9 QI, XI 30S ribosomal protein S9 300852  
69 4V7L 9 AI, CI 30S ribosomal protein S9 300852  
70 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
71 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
72 4V7J 8 Ai, Bi 30S ribosomal protein S9 300852  
73 4L47 9 QI, XI 30S ribosomal protein S9 300852  
74 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
75 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
76 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
77 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
78 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
79 4V97 9 AI, CI 30S ribosomal protein S9 300852  
80 4V7M 9 AI, CI 30S ribosomal protein S9 300852  
81 4V6A 9 AI, CI 30S ribosomal protein S9 300852  
82 4V7K 8 Ai, Bi 30S ribosomal protein S9 300852  
83 4P70 9 QI, XI 30S ribosomal protein S9 300852  
84 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
85 4LSK 9 QI, XI 30S ribosomal protein S9 300852  
86 4P6F 9 QI, XI 30S ribosomal protein S9 300852  
87 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
88 1VVJ 9 QI, XI 30S ribosomal protein S9 300852  
89 4LFZ 9 QI, XI 30S ribosomal protein S9 300852  
90 4OX9 9 I 30S ribosomal protein S9 300852  
91 4L71 9 QI, XI 30S ribosomal protein S9 300852  
92 4V8J 9 AI, CI 30S ribosomal protein S9 300852  
93 4LEL 9 QI, XI 30S ribosomal protein S9 300852  
94 4V9L 8 AI, CI 30S ribosomal protein S9 262724  
95 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
96 4V9M 8 AI, CI 30S ribosomal protein S9 262724  
97 4W29 8 AI, CI 30S ribosomal protein S9 262724  
98 4V4Y 11 AL 30S ribosomal protein S9 300852  
99 4V4X 11 AL 30S ribosomal protein S9 300852  
100 4V4Z 12 AL 30S ribosomal protein S9 300852  
101 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
102 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 187 28
95% 29 188 47
90% 29 188 50
70% 29 188 60
50% 39 269 34
40% 39 269 45
30% 39 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 26
95% 29 189 43
90% 29 189 46
70% 29 189 56
50% 33 263 41
40% 40 316 35
30% 40 316 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17466
95% 29 196 35
90% 29 196 37
70% 33 275 24
50% 33 275 33
40% 33 275 44
30% 33 275 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 23
95% 29 190 41
90% 29 190 44
70% 29 190 54
50% 33 268 38
40% 33 268 51
30% 38 317 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 188 27
95% 29 188 48
90% 29 188 51
70% 29 188 61
50% 29 188 94
40% 29 188 119
30% 29 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 21
95% 31 197 33
90% 31 197 35
70% 31 197 47
50% 38 276 32
40% 38 276 43
30% 38 276 66
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 29
95% 29 189 45
90% 29 189 48
70% 29 189 58
50% 29 189 92
40% 29 189 117
30% 33 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 104 55
95% 29 183 49
90% 29 187 52
70% 29 187 62
50% 29 187 95
40% 29 187 120
30% 29 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 49
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 139
30% 26 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 266 37
40% 34 266 50
30% 34 266 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 24
95% 29 190 38
90% 29 190 42
70% 29 190 52
50% 29 190 91
40% 33 263 54
30% 33 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 140 42
95% 29 188 46
90% 29 188 49
70% 29 188 59
50% 29 188 93
40% 29 188 118
30% 29 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 179 34
95% 29 179 54
90% 29 179 56
70% 29 179 69
50% 29 179 105
40% 29 179 132
30% 29 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 166 38
95% 26 166 63
90% 26 166 66
70% 26 166 82
50% 27 205 77
40% 27 205 101
30% 27 205 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 182 31
95% 29 190 39
90% 29 190 43
70% 29 190 53
50% 33 263 39
40% 33 264 52
30% 33 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 25
95% 29 189 42
90% 29 189 45
70% 29 189 55
50% 34 267 36
40% 34 267 49
30% 34 269 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 194 19
95% 36 200 29
90% 36 200 30
70% 36 200 45
50% 36 200 86
40% 36 200 108
30% 41 237 93
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 193 20
95% 30 194 36
90% 30 194 38
70% 30 194 50
50% 34 235 56
40% 34 236 73
30% 34 236 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 22
95% 30 189 40
90% 30 193 39
70% 30 193 51
50% 36 269 35
40% 37 271 46
30% 43 321 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 76
95% 29 189 44
90% 29 189 47
70% 29 189 57
50% 33 263 40
40% 33 263 55
30% 38 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.