Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 269 39
95 % 57 270 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 57 270 58
70 % 57 270 69
50 % 75 428 26
40 % 75 428 38
30 % 81 535 32
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 271 35
95 % 57 271 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 57 271 54
70 % 57 271 65
50 % 69 422 32
40 % 77 546 19
30 % 77 546 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22931
95 % 57 278 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 57 278 44
70 % 69 426 18
50 % 69 439 24
40 % 69 439 36
30 % 69 439 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 272 33
95 % 57 272 46 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 57 272 51
70 % 57 272 62
50 % 69 426 31
40 % 69 426 44
30 % 75 535 35
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 270 36
95 % 57 270 54
90 % 57 270 59
70 % 57 283 53
50 % 57 283 91
40 % 57 283 112
30 % 57 283 124
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 274 30
95 % 59 279 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 59 279 43
70 % 59 279 54
50 % 74 435 25
40 % 74 440 35
30 % 74 440 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 266 41
95 % 57 271 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 57 271 56
70 % 57 271 67
50 % 57 281 92
40 % 57 281 114
30 % 69 419 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 178 59
95 % 57 265 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 57 269 60
70 % 57 269 70
50 % 57 269 95
40 % 57 269 117
30 % 57 269 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 185 57
95 % 51 236 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 51 236 69
70 % 51 236 81
50 % 51 236 114
40 % 51 236 137
30 % 51 236 145
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 274 29
95 % 58 274 42 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 58 274 48
70 % 58 274 58
50 % 70 428 28
40 % 70 431 40
30 % 70 431 57
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 271 31
95 % 57 272 43 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 57 272 49
70 % 57 272 59
50 % 69 415 34
40 % 69 420 45
30 % 69 420 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 219 51
95 % 57 270 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 57 270 57
70 % 57 270 68
50 % 57 270 94
40 % 57 270 116
30 % 57 270 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 261 43
95 % 57 261 59 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 57 261 63
70 % 57 261 74
50 % 57 261 100
40 % 57 261 122
30 % 57 261 135
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 235 49
95 % 51 235 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 51 235 70
70 % 51 235 82
50 % 53 309 85
40 % 53 309 103
30 % 53 309 118
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 264 42
95 % 57 272 44 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 57 272 50
70 % 57 272 60
50 % 69 423 29
40 % 69 428 42
30 % 69 428 58
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 271 34
95 % 57 271 48 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 0.6
PDBFlex
90 % 57 271 53
70 % 57 271 64
50 % 70 423 30
40 % 70 423 43
30 % 70 425 60
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 276 27
95 % 64 282 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 64 282 42
70 % 64 282 52
50 % 64 282 90
40 % 64 282 111
30 % 76 362 93
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 275 28
95 % 58 276 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.9
PDBFlex
90 % 58 276 46
70 % 58 276 56
50 % 69 363 66
40 % 69 368 82
30 % 69 368 95
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 271 32
95 % 58 271 45 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 58 275 47
70 % 58 275 57
50 % 72 428 27
40 % 73 434 37
30 % 80 551 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 180 69
95 % 57 271 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 57 271 55
70 % 57 271 66
50 % 69 417 33
40 % 69 417 46
30 % 75 535 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 40 1i, 2i 30S ribosomal protein S9 274
2 5J8B 42 i 30S ribosomal protein S9 274
3 4W2F 9 AI, CI 30S Ribosomal Protein S9 274
4 4Y4P 40 1i, 2i 30S ribosomal protein S9 274
5 5FDV 41 1i, 2i 30S ribosomal protein S9 274
6 5J4B 40 1i, 2i 30S ribosomal protein S9 274
7 4W2G 9 AI, CI 30S Ribosomal Protein S9 274
8 5W4K 40 1i, 2i 30S ribosomal protein S9 274
9 4LFB 9 I ribosomal protein S9 274
10 1VY4 9 AI, CI 30S ribosomal protein S9 274
11 5FDU 40 1i, 2i 30S ribosomal protein S9 274
12 4W2I 9 AI, CI 30S Ribosomal Protein S9 274
13 1VY5 9 AI, CI 30S ribosomal protein S9 274
14 5HCQ 40 1i, 2i 30S ribosomal protein S9 274
15 4WQF 42 BI, DI 30S ribosomal protein S9 274
16 4W2H 9 AI, CI 30S Ribosomal Protein S9 274
17 4WPO 42 BI, DI 30S ribosomal protein S9 274
18 4V8I 9 AI, CI 30S Ribosomal Protein S9 274
19 4JI1 9 I RIBOSOMAL PROTEIN S9 274
20 4Z3S 40 1i, 2i 30S ribosomal protein S9 274
21 5DOY 40 1i, 2i 30S Ribosomal Protein S9 274
22 5HD1 40 1i, 2i 30S ribosomal protein S9 274
23 4DR6 9 I 30S ribosomal protein S9 274
24 4LF7 9 I ribosomal protein S9 274
25 4LF8 9 I ribosomal protein S9 274
26 4WSD 9 82, 8E 30S ribosomal protein S9 274
27 4WQU 42 BI, DI 30S ribosomal protein S9 274
28 5E81 9 82, 8E 30S ribosomal protein S9 274
29 4Z8C 40 1i, 2i 30S ribosomal protein S9 274
30 5HCR 40 1i, 2i 30S ribosomal protein S9 274
31 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 274
32 4DV6 9 I ribosomal protein S9 274
33 5IBB 9 82, 8E 30S ribosomal protein S9 274
34 4DR5 9 I 30S ribosomal protein S9 274
35 5J4C 40 1i, 2i 30S ribosomal protein S9 274
36 4DR2 9 I 30S ribosomal protein S9 274
37 4WRO 13 8E 30S ribosomal protein S9 274
38 4WQ1 9 82, 8E 30S ribosomal protein S9 274
39 4LF9 9 I ribosomal protein S9 274
40 4WQY 42 BI, DI 30S ribosomal protein S9 274
41 4DUY 9 I ribosomal protein S9 274
42 4DV7 9 I ribosomal protein S9 274
43 4WRA 9 82, 8E 30S ribosomal protein S9 274
44 5IB7 9 82, 8E 30S ribosomal protein S9 274
45 4X64 9 I 30S ribosomal protein S9 274
46 5HCP 40 1i, 2i 30S ribosomal protein S9 274
47 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
48 4DR3 9 I 30S ribosomal protein S9 274
49 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 274
50 4JI3 9 I RIBOSOMAL PROTEIN S9 274
51 4WQR 9 82, 8E 30S ribosomal protein S9 274
52 4JI6 9 I RIBOSOMAL PROTEIN S9 274
53 4JI8 9 I RIBOSOMAL PROTEIN S9 274
54 5IB8 9 82, 8E 30S ribosomal protein S9 274
55 4V9R 9 AI, CI 30S Ribosomal Protein S9 274
56 5EL6 9 82, 8E 30S ribosomal protein S9 274
57 5EL7 9 82, 8E 30S ribosomal protein S9 274
58 5VP2 40 1i, 2i 30S ribosomal protein S9 274
59 4LF4 9 I ribosomal protein S9 274
60 5DFE 43 QI, XI 30S ribosomal protein S9 274
61 4LF6 9 I ribosomal protein S9 274
62 4JI7 9 I RIBOSOMAL PROTEIN S9 274
63 4WU1 9 82, 8E 30S ribosomal protein S9 274
64 5EL4 9 82, 8E 30S ribosomal protein S9 274
65 4WR6 9 82, 8E 30S ribosomal protein S9 274
66 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
67 5HAU 42 1i, 2i 30S ribosomal protein S9 274
68 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 274
69 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
70 4V95 9 AI, CI 30S Ribosomal Protein S9 274
71 1VY7 9 AI, CI 30S ribosomal protein S9 274
72 5E7K 9 82, 8E 30S ribosomal protein S9 274
73 5EL5 9 82, 8E 30S ribosomal protein S9 274
74 4LNT 9 QI, XI 30S ribosomal protein S9 274
75 4DR1 9 I 30S ribosomal protein S9 274
76 4LFA 9 I ribosomal protein S9 274
77 4DV4 9 I ribosomal protein S9 274
78 4YZV 9 QI, XI 30S ribosomal protein S9 274
79 4JI0 9 I ribosomal protein S9 274
80 5IWA 8 I 30S ribosomal protein S9 274
81 4V9S 9 AI, CI 30S Ribosomal Protein S9 274
82 4JI2 9 I RIBOSOMAL PROTEIN S9 274
83 4DR7 9 I 30S ribosomal protein S9 274
84 4DUZ 9 I ribosomal protein S9 274
85 4X65 9 I 30S ribosomal protein S9 274
86 4V8G 9 AI, CI 30S Ribosomal Protein S9 274
87 4DV3 9 I ribosomal protein S9 274
88 4DV5 9 I ribosomal protein S9 274
89 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 274
90 4LFC 9 I ribosomal protein S9 274
91 4WZO 9 82, 8E 30S ribosomal protein S9 274
92 4JI4 9 I RIBOSOMAL PROTEIN S9 274
93 1VY6 9 AI, CI 30S ribosomal protein S9 274
94 4DV0 9 I ribosomal protein S9 274
95 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
96 4V6F 39 BL, CL 30S ribosomal protein S9 274
97 4X62 9 I 30S ribosomal protein S9 274
98 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
99 4DV2 9 I ribosomal protein S9 274
100 4DV1 9 I ribosomal protein S9 274
101 5F8K 40 1i, 2i 30S ribosomal protein S9 274
102 4V8H 9 AI, CI 30S Ribosomal Protein S9 274
103 4JI5 9 I RIBOSOMAL PROTEIN S9 274
104 4W2E 42 i 30S ribosomal protein S9 274
105 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 274
106 5BR8 9 I 30S ribosomal protein S9 274
107 4LF5 9 I ribosomal protein S9 274
108 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
109 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 274
110 5J30 40 QI, XI 30S ribosomal protein S9 274
111 4DR4 9 I 30S ribosomal protein S9 274
112 4WZD 9 82, 8E 30S ribosomal protein S9 274
113 4X66 9 I 30S ribosomal protein S9 274
114 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 274
115 4W4G 9 QI, XI 30S ribosomal protein S9 274
116 4NXM 9 I ribosomal protein S9 274
117 4YPB 9 QI, XI 30S ribosomal protein S9 274
118 4ZER 40 1i, 2i 30S ribosomal protein S9 274
119 4WT1 9 82, 8E 30S ribosomal protein S9 274
120 5DOX 40 1i, 2i 30S ribosomal protein S9 274
121 4NXN 9 I ribosomal protein S9 274
122 4LT8 9 QI, XI 30S ribosomal protein S9 274
123 4V7L 9 AI, CI 30S ribosomal protein S9 274
124 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
125 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
126 4V7J 8 Ai, Bi 30S ribosomal protein S9 274
127 5J3C 40 QI, XI 30S ribosomal protein S9 274
128 4L47 9 QI, XI 30S ribosomal protein S9 274
129 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
130 4ZSN 9 QI, XI 30S ribosomal protein S9 274
131 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
132 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
133 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
134 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
135 4V97 9 AI, CI 30S ribosomal protein S9 274
136 4V7M 9 AI, CI 30S ribosomal protein S9 274
137 4WSM 9 82, 8E 30S ribosomal protein S9 274
138 4TUD 9 QI, XI 30S ribosomal protein S9 274
139 4V6A 9 AI, CI 30S ribosomal protein S9 274
140 4TUE 9 QI, XI 30S ribosomal protein S9 274
141 4TUA 9 QI, XI 30S ribosomal protein S9 274
142 4V7K 8 Ai, Bi 30S ribosomal protein S9 274
143 4YY3 9 I 30S ribosomal protein S9 274
144 4TUC 9 QI, XI 30S ribosomal protein S9 274
145 4YHH 9 I 30S ribosomal protein S9 274
146 4TUB 9 QI, XI 30S ribosomal protein S9 274
147 4P70 9 QI, XI 30S ribosomal protein S9 274
148 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
149 4LSK 9 QI, XI 30S ribosomal protein S9 274
150 4P6F 9 QI, XI 30S ribosomal protein S9 274
151 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
152 1VVJ 9 QI, XI 30S ribosomal protein S9 274
153 4LFZ 9 QI, XI 30S ribosomal protein S9 274
154 5CZP 40 QI, XI 30S ribosomal protein S9 274
155 4OX9 9 I 30S ribosomal protein S9 274
156 4L71 9 QI, XI 30S ribosomal protein S9 274
157 4V8J 9 AI, CI 30S ribosomal protein S9 274
158 4LEL 9 QI, XI 30S ribosomal protein S9 274
159 4V9L 8 AI, CI 30S ribosomal protein S9 274
160 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
161 4V9M 8 AI, CI 30S ribosomal protein S9 274
162 4W29 8 AI, CI 30S ribosomal protein S9 274
163 4V4Y 11 AL 30S ribosomal protein S9 274
164 4V4X 11 AL 30S ribosomal protein S9 274
165 4V4Z 12 AL 30S ribosomal protein S9 274
166 5LMN 9 I 30S ribosomal protein S9 Uniprot code P80374 274
167 5LMO 9 I 30S ribosomal protein S9 274
168 5LMP 9 I 30S ribosomal protein S9 274
169 5LMQ 9 I 30S ribosomal protein S9 274
170 5LMR 9 I 30S ribosomal protein S9 274
171 5LMS 9 I 30S ribosomal protein S9 274
172 5LMT 9 I 30S ribosomal protein S9 274
173 5LMU 9 I 30S ribosomal protein S9 274
174 5LMV 9 I 30S ribosomal protein S9 274
175 5IMQ 16 M 30S ribosomal protein S9 274
176 5IMR 9 M 30S ribosomal protein S9 274
177 5A9Z 42 BM 30S ribosomal protein S9 274
178 5AA0 42 BM 30S ribosomal protein S9 274
179 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 274
180 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 274