Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 237 25
95 % 47 238 38
90 % 47 238 43
70 % 47 238 53
50 % 59 330 30
40 % 59 330 40
30 % 64 396 41
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 23
95 % 47 239 34
90 % 47 239 39
70 % 47 239 48
50 % 53 324 38
40 % 60 397 27
30 % 60 398 39
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19424
95 % 47 246 22
90 % 47 246 27
70 % 53 335 23
50 % 53 336 29
40 % 53 336 39
30 % 53 336 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 240 20
95 % 47 240 32
90 % 47 240 37
70 % 47 240 46
50 % 53 329 35
40 % 53 329 46
30 % 58 397 46
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 238 24
95 % 47 238 39
90 % 47 238 44
70 % 47 239 51
50 % 47 239 82
40 % 47 239 107
30 % 47 239 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 242 16
95 % 49 247 21
90 % 49 247 26
70 % 49 247 37
50 % 58 337 27
40 % 58 338 38
30 % 58 338 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 234 26
95 % 47 239 36
90 % 47 239 41
70 % 47 239 50
50 % 47 239 81
40 % 47 240 106
30 % 53 327 64
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 149 57
95 % 47 233 40
90 % 47 237 45
70 % 47 237 54
50 % 47 237 87
40 % 47 237 113
30 % 47 237 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 156 56
95 % 41 205 63
90 % 41 205 66
70 % 41 205 75
50 % 41 205 109
40 % 41 205 129
30 % 41 205 145
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 242 15
95 % 48 242 26
90 % 48 242 31
70 % 48 242 42
50 % 54 327 34
40 % 54 327 44
30 % 54 327 60
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 17
95 % 47 240 27
90 % 47 240 33
70 % 47 240 43
50 % 53 323 37
40 % 53 324 47
30 % 53 324 63
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 188 48
95 % 47 238 37
90 % 47 238 42
70 % 47 238 52
50 % 47 238 83
40 % 47 238 109
30 % 47 238 125
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 229 39
95 % 47 229 54
90 % 47 229 58
70 % 47 229 69
50 % 47 229 96
40 % 47 229 118
30 % 47 229 132
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 204 43
95 % 41 204 64
90 % 41 204 67
70 % 41 204 76
50 % 43 252 68
40 % 43 252 93
30 % 43 252 110
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 232 27
95 % 47 240 28
90 % 47 240 34
70 % 47 240 44
50 % 53 324 36
40 % 53 325 45
30 % 53 325 62
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 22
95 % 47 239 33
90 % 47 239 38
70 % 47 239 47
50 % 54 328 33
40 % 54 328 43
30 % 54 330 59
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 244 13
95 % 54 250 20
90 % 54 250 25
70 % 54 250 35
50 % 54 250 70
40 % 54 250 94
30 % 60 289 80
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 243 14
95 % 48 244 25
90 % 48 244 29
70 % 48 244 40
50 % 53 289 50
40 % 53 290 62
30 % 53 290 83
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 239 19
95 % 48 239 31
90 % 48 243 30
70 % 48 243 41
50 % 56 330 31
40 % 57 332 41
30 % 63 401 37
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 149 70
95 % 47 239 35
90 % 47 239 40
70 % 47 239 49
50 % 53 324 39
40 % 53 324 49
30 % 58 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 40 1i, 2i 30S ribosomal protein S9 274
2 4W2F 9 AI, CI 30S Ribosomal Protein S9 274
3 4Y4P 40 1i, 2i 30S ribosomal protein S9 274
4 5FDV 41 1i, 2i 30S ribosomal protein S9 274
5 4W2G 9 AI, CI 30S Ribosomal Protein S9 274
6 4LFB 9 I ribosomal protein S9 274
7 1VY4 9 AI, CI 30S ribosomal protein S9 274
8 5FDU 40 1i, 2i 30S ribosomal protein S9 274
9 4W2I 9 AI, CI 30S Ribosomal Protein S9 274
10 1VY5 9 AI, CI 30S ribosomal protein S9 274
11 4WQF 42 BI, DI 30S ribosomal protein S9 274
12 4W2H 9 AI, CI 30S Ribosomal Protein S9 274
13 4WPO 42 BI, DI 30S ribosomal protein S9 274
14 4V8I 9 AI, CI 30S Ribosomal Protein S9 274
15 4JI1 9 I RIBOSOMAL PROTEIN S9 274
16 4Z3S 40 1i, 2i 30S ribosomal protein S9 274
17 5DOY 40 1i, 2i 30S Ribosomal Protein S9 274
18 4DR6 9 I 30S ribosomal protein S9 274
19 4LF7 9 I ribosomal protein S9 274
20 4LF8 9 I ribosomal protein S9 274
21 4WSD 9 82, 8E 30S ribosomal protein S9 274
22 4WQU 42 BI, DI 30S ribosomal protein S9 274
23 5E81 9 82, 8E 30S ribosomal protein S9 274
24 4Z8C 40 1i, 2i 30S ribosomal protein S9 274
25 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 274
26 4DV6 9 I ribosomal protein S9 274
27 4DR5 9 I 30S ribosomal protein S9 274
28 4DR2 9 I 30S ribosomal protein S9 274
29 4WRO 13 8E 30S ribosomal protein S9 274
30 4WQ1 9 82, 8E 30S ribosomal protein S9 274
31 4LF9 9 I ribosomal protein S9 274
32 4WQY 42 BI, DI 30S ribosomal protein S9 274
33 4DUY 9 I ribosomal protein S9 274
34 4DV7 9 I ribosomal protein S9 274
35 4WRA 9 82, 8E 30S ribosomal protein S9 274
36 4X64 9 I 30S ribosomal protein S9 274
37 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
38 4DR3 9 I 30S ribosomal protein S9 274
39 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 274
40 4JI3 9 I RIBOSOMAL PROTEIN S9 274
41 4WQR 9 82, 8E 30S ribosomal protein S9 274
42 4JI6 9 I RIBOSOMAL PROTEIN S9 274
43 4JI8 9 I RIBOSOMAL PROTEIN S9 274
44 4V9R 9 AI, CI 30S Ribosomal Protein S9 274
45 5EL6 9 82, 8E 30S ribosomal protein S9 274
46 5EL7 9 82, 8E 30S ribosomal protein S9 274
47 4LF4 9 I ribosomal protein S9 274
48 4LF6 9 I ribosomal protein S9 274
49 4JI7 9 I RIBOSOMAL PROTEIN S9 274
50 4WU1 9 82, 8E 30S ribosomal protein S9 274
51 5EL4 9 82, 8E 30S ribosomal protein S9 274
52 4WR6 9 82, 8E 30S ribosomal protein S9 274
53 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
54 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 274
55 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
56 4V95 9 AI, CI 30S Ribosomal Protein S9 274
57 1VY7 9 AI, CI 30S ribosomal protein S9 274
58 5E7K 9 82, 8E 30S ribosomal protein S9 274
59 5EL5 9 82, 8E 30S ribosomal protein S9 274
60 4LNT 9 QI, XI 30S ribosomal protein S9 274
61 4DR1 9 I 30S ribosomal protein S9 274
62 4LFA 9 I ribosomal protein S9 274
63 4DV4 9 I ribosomal protein S9 274
64 4YZV 9 QI, XI 30S ribosomal protein S9 274
65 4JI0 9 I ribosomal protein S9 274
66 4V9S 9 AI, CI 30S Ribosomal Protein S9 274
67 4JI2 9 I RIBOSOMAL PROTEIN S9 274
68 4DR7 9 I 30S ribosomal protein S9 274
69 4DUZ 9 I ribosomal protein S9 274
70 4X65 9 I 30S ribosomal protein S9 274
71 4V8G 9 AI, CI 30S Ribosomal Protein S9 274
72 4DV3 9 I ribosomal protein S9 274
73 4DV5 9 I ribosomal protein S9 274
74 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 274
75 4LFC 9 I ribosomal protein S9 274
76 4WZO 9 82, 8E 30S ribosomal protein S9 274
77 4JI4 9 I RIBOSOMAL PROTEIN S9 274
78 1VY6 9 AI, CI 30S ribosomal protein S9 274
79 4DV0 9 I ribosomal protein S9 274
80 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
81 4V6F 39 BL, CL 30S ribosomal protein S9 274
82 4X62 9 I 30S ribosomal protein S9 274
83 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
84 4DV2 9 I ribosomal protein S9 274
85 4DV1 9 I ribosomal protein S9 274
86 5F8K 40 1i, 2i 30S ribosomal protein S9 274
87 4V8H 9 AI, CI 30S Ribosomal Protein S9 274
88 4JI5 9 I RIBOSOMAL PROTEIN S9 274
89 4W2E 42 i 30S ribosomal protein S9 274
90 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 274
91 5BR8 9 I 30S ribosomal protein S9 274
92 4LF5 9 I ribosomal protein S9 274
93 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
94 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 274
95 4DR4 9 I 30S ribosomal protein S9 274
96 4WZD 9 82, 8E 30S ribosomal protein S9 274
97 4X66 9 I 30S ribosomal protein S9 274
98 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 274
99 4W4G 9 QI, XI 30S ribosomal protein S9 274
100 4NXM 9 I ribosomal protein S9 274
101 4YPB 9 QI, XI 30S ribosomal protein S9 274
102 4ZER 40 1i, 2i 30S ribosomal protein S9 274
103 4WT1 9 82, 8E 30S ribosomal protein S9 274
104 5DOX 40 1i, 2i 30S ribosomal protein S9 274
105 4NXN 9 I ribosomal protein S9 274
106 4LT8 9 QI, XI 30S ribosomal protein S9 274
107 4V7L 9 AI, CI 30S ribosomal protein S9 274
108 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
109 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
110 4V7J 8 Ai, Bi 30S ribosomal protein S9 274
111 4L47 9 QI, XI 30S ribosomal protein S9 274
112 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
113 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
114 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
115 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
116 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
117 4V97 9 AI, CI 30S ribosomal protein S9 274
118 4V7M 9 AI, CI 30S ribosomal protein S9 274
119 4WSM 9 82, 8E 30S ribosomal protein S9 274
120 4TUD 9 QI, XI 30S ribosomal protein S9 274
121 4V6A 9 AI, CI 30S ribosomal protein S9 274
122 4TUE 9 QI, XI 30S ribosomal protein S9 274
123 4TUA 9 QI, XI 30S ribosomal protein S9 274
124 4V7K 8 Ai, Bi 30S ribosomal protein S9 274
125 4TUC 9 QI, XI 30S ribosomal protein S9 274
126 4YHH 9 I 30S ribosomal protein S9 274
127 4TUB 9 QI, XI 30S ribosomal protein S9 274
128 4P70 9 QI, XI 30S ribosomal protein S9 274
129 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
130 4LSK 9 QI, XI 30S ribosomal protein S9 274
131 4P6F 9 QI, XI 30S ribosomal protein S9 274
132 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
133 1VVJ 9 QI, XI 30S ribosomal protein S9 274
134 4LFZ 9 QI, XI 30S ribosomal protein S9 274
135 4OX9 9 I 30S ribosomal protein S9 274
136 4L71 9 QI, XI 30S ribosomal protein S9 274
137 4V8J 9 AI, CI 30S ribosomal protein S9 274
138 4LEL 9 QI, XI 30S ribosomal protein S9 274
139 4V9L 8 AI, CI 30S ribosomal protein S9 274
140 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
141 4V9M 8 AI, CI 30S ribosomal protein S9 274
142 4W29 8 AI, CI 30S ribosomal protein S9 274
143 4V4Y 11 AL 30S ribosomal protein S9 274
144 4V4X 11 AL 30S ribosomal protein S9 274
145 4V4Z 12 AL 30S ribosomal protein S9 274
146 5A9Z 42 BM 30S ribosomal protein S9 274
147 5AA0 42 BM 30S ribosomal protein S9 274
148 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 274
149 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 274