POP-OUT | CLOSE

An Information Portal to 109093 Biological Macromolecular Structures

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 81 Members. Sequence cutoff: 100% Cluster size: 116 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
Select for download / view details OR: Select two chains for comparison
  Download      Details  
1 4Y4O 40 1i, 2i 30S ribosomal protein S9 300852  
2 4W2F 9 AI, CI 30S Ribosomal Protein S9 300852  
3 4Y4P 40 1i, 2i 30S ribosomal protein S9 300852  
4 4W2G 9 AI, CI 30S Ribosomal Protein S9 300852  
5 4LFB 9 I ribosomal protein S9 300852  
6 1VY4 9 AI, CI 30S ribosomal protein S9 300852  
7 4W2I 9 AI, CI 30S Ribosomal Protein S9 300852  
8 1VY5 9 AI, CI 30S ribosomal protein S9 300852  
9 4WQF 42 BI, DI 30S ribosomal protein S9 300852  
10 4W2H 9 AI, CI 30S Ribosomal Protein S9 300852  
11 4WPO 42 BI, DI 30S ribosomal protein S9 300852  
12 4V8I 9 AI, CI 30S Ribosomal Protein S9 274  
13 4JI1 9 I RIBOSOMAL PROTEIN S9 300852  
14 4DR6 9 I 30S ribosomal protein S9 300852  
15 4LF7 9 I ribosomal protein S9 300852  
16 4LF8 9 I ribosomal protein S9 300852  
17 4WQU 42 BI, DI 30S ribosomal protein S9 300852  
18 4Z8C 40 1i, 2i 30S ribosomal protein S9 300852  
19 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 300852  
20 4DV6 9 I ribosomal protein S9 300852  
21 4DR5 9 I 30S ribosomal protein S9 300852  
22 4DR2 9 I 30S ribosomal protein S9 300852  
23 4LF9 9 I ribosomal protein S9 300852  
24 4WQY 42 BI, DI 30S ribosomal protein S9 300852  
25 4DUY 9 I ribosomal protein S9 300852  
26 4DV7 9 I ribosomal protein S9 300852  
27 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
28 4DR3 9 I 30S ribosomal protein S9 300852  
29 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
30 4JI3 9 I RIBOSOMAL PROTEIN S9 300852  
31 4JI6 9 I RIBOSOMAL PROTEIN S9 300852  
32 4JI8 9 I RIBOSOMAL PROTEIN S9 300852  
33 4V9R 9 AI, CI 30S Ribosomal Protein S9 274  
34 4LF4 9 I ribosomal protein S9 300852  
35 4LF6 9 I ribosomal protein S9 300852  
36 4JI7 9 I RIBOSOMAL PROTEIN S9 300852  
37 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
38 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 300852  
39 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 300852  
40 4V95 9 AI, CI 30S Ribosomal Protein S9 274  
41 1VY7 9 AI, CI 30S ribosomal protein S9 300852  
42 4LNT 9 QI, XI 30S ribosomal protein S9 300852  
43 4DR1 9 I 30S ribosomal protein S9 300852  
44 4LFA 9 I ribosomal protein S9 300852  
45 4DV4 9 I ribosomal protein S9 300852  
46 4JI0 9 I ribosomal protein S9 300852  
47 4V9S 9 AI, CI 30S Ribosomal Protein S9 274  
48 4JI2 9 I RIBOSOMAL PROTEIN S9 300852  
49 4DR7 9 I 30S ribosomal protein S9 300852  
50 4DUZ 9 I ribosomal protein S9 300852  
51 4V8G 9 AI, CI 30S Ribosomal Protein S9 300852  
52 4DV3 9 I ribosomal protein S9 300852  
53 4DV5 9 I ribosomal protein S9 300852  
54 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 300852  
55 4LFC 9 I ribosomal protein S9 300852  
56 4JI4 9 I RIBOSOMAL PROTEIN S9 300852  
57 1VY6 9 AI, CI 30S ribosomal protein S9 300852  
58 4DV0 9 I ribosomal protein S9 300852  
59 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
60 4V6F 39 BL, CL 30S ribosomal protein S9 300852  
61 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 300852  
62 4DV2 9 I ribosomal protein S9 300852  
63 4DV1 9 I ribosomal protein S9 300852  
64 4V8H 9 AI, CI 30S Ribosomal Protein S9 300852  
65 4JI5 9 I RIBOSOMAL PROTEIN S9 300852  
66 4W2E 42 i 30S ribosomal protein S9 300852  
67 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 300852  
68 4LF5 9 I ribosomal protein S9 300852  
69 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
70 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 300852  
71 4DR4 9 I 30S ribosomal protein S9 300852  
72 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 300852  
73 4NXM 9 I ribosomal protein S9 300852  
74 4ZER 40 1i, 2i 30S ribosomal protein S9 300852  
75 4NXN 9 I ribosomal protein S9 300852  
76 4LT8 9 QI, XI 30S ribosomal protein S9 300852  
77 4V7L 9 AI, CI 30S ribosomal protein S9 300852  
78 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
79 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
80 4V7J 8 Ai, Bi 30S ribosomal protein S9 300852  
81 4L47 9 QI, XI 30S ribosomal protein S9 300852  
82 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
83 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
84 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
85 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
86 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
87 4V97 9 AI, CI 30S ribosomal protein S9 300852  
88 4V7M 9 AI, CI 30S ribosomal protein S9 300852  
89 4TUD 9 QI, XI 30S ribosomal protein S9 300852  
90 4V6A 9 AI, CI 30S ribosomal protein S9 300852  
91 4TUE 9 QI, XI 30S ribosomal protein S9 300852  
92 4TUA 9 QI, XI 30S ribosomal protein S9 300852  
93 4V7K 8 Ai, Bi 30S ribosomal protein S9 300852  
94 4TUC 9 QI, XI 30S ribosomal protein S9 300852  
95 4YHH 9 I 30S ribosomal protein S9 300852  
96 4TUB 9 QI, XI 30S ribosomal protein S9 300852  
97 4P70 9 QI, XI 30S ribosomal protein S9 300852  
98 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
99 4LSK 9 QI, XI 30S ribosomal protein S9 300852  
100 4P6F 9 QI, XI 30S ribosomal protein S9 300852  
101 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
102 1VVJ 9 QI, XI 30S ribosomal protein S9 300852  
103 4LFZ 9 QI, XI 30S ribosomal protein S9 300852  
104 4OX9 9 I 30S ribosomal protein S9 300852  
105 4L71 9 QI, XI 30S ribosomal protein S9 300852  
106 4V8J 9 AI, CI 30S ribosomal protein S9 300852  
107 4LEL 9 QI, XI 30S ribosomal protein S9 300852  
108 4V9L 8 AI, CI 30S ribosomal protein S9 262724  
109 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
110 4V9M 8 AI, CI 30S ribosomal protein S9 262724  
111 4W29 8 AI, CI 30S ribosomal protein S9 262724  
112 4V4Y 11 AL 30S ribosomal protein S9 300852  
113 4V4X 11 AL 30S ribosomal protein S9 300852  
114 4V4Z 12 AL 30S ribosomal protein S9 300852  
115 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
116 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 25
95% 36 205 45
90% 36 205 47
70% 36 205 57
50% 47 290 35
40% 47 290 45
30% 52 342 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 23
95% 36 206 41
90% 36 206 43
70% 36 206 52
50% 41 284 41
40% 48 343 34
30% 48 344 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18113
95% 36 213 32
90% 36 213 35
70% 41 295 24
50% 41 296 34
40% 41 296 44
30% 41 296 67
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 207 20
95% 36 207 39
90% 36 207 41
70% 36 207 50
50% 41 289 39
40% 41 289 49
30% 46 343 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 205 24
95% 36 205 46
90% 36 205 48
70% 36 206 55
50% 36 206 85
40% 36 206 110
30% 36 206 129
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 209 18
95% 38 214 30
90% 38 214 33
70% 38 214 43
50% 46 297 33
40% 46 298 43
30% 46 298 65
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 201 29
95% 36 206 43
90% 36 206 45
70% 36 206 54
50% 36 206 84
40% 36 207 109
30% 41 287 74
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 120 62
95% 36 200 47
90% 36 204 49
70% 36 204 58
50% 36 204 87
40% 36 204 112
30% 36 204 131
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 131 56
95% 33 180 55
90% 33 180 57
70% 33 180 72
50% 33 180 119
40% 33 180 143
30% 33 180 159
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 209 17
95% 37 209 34
90% 37 209 38
70% 37 209 47
50% 42 287 38
40% 42 287 48
30% 42 287 71
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 21
95% 36 207 36
90% 36 207 39
70% 36 207 48
50% 41 283 43
40% 41 284 51
30% 41 284 73
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 156 52
95% 36 205 44
90% 36 205 46
70% 36 205 56
50% 36 205 86
40% 36 205 111
30% 36 205 130
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 196 32
95% 36 196 51
90% 36 196 53
70% 36 196 64
50% 36 196 97
40% 36 196 120
30% 36 196 143
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 179 36
95% 33 179 56
90% 33 179 59
70% 33 179 73
50% 34 220 77
40% 34 220 101
30% 34 220 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 30
95% 36 207 37
90% 36 207 40
70% 36 207 49
50% 41 284 40
40% 41 285 50
30% 41 285 72
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 22
95% 36 206 40
90% 36 206 42
70% 36 206 51
50% 42 288 37
40% 42 288 47
30% 42 290 69
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 211 15
95% 43 217 28
90% 43 217 31
70% 43 217 41
50% 43 217 78
40% 43 217 102
30% 49 256 85
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 210 16
95% 37 211 33
90% 37 211 36
70% 37 211 45
50% 42 254 52
40% 42 255 67
30% 42 255 88
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 206 19
95% 37 206 38
90% 37 210 37
70% 37 210 46
50% 44 290 36
40% 45 292 46
30% 51 347 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 116 81
95% 36 206 42
90% 36 206 44
70% 36 206 53
50% 41 284 42
40% 41 284 52
30% 46 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.