Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 297 38
95 % 65 297 48 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 65 297 53
70 % 65 297 64
50 % 83 468 24
40 % 89 592 20
30 % 89 594 34
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 298 36
95 % 65 298 45 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 65 298 50
70 % 65 298 62
50 % 77 462 32
40 % 85 601 19
30 % 85 601 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 8655
95 % 65 305 36 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 65 305 40
70 % 77 476 14
50 % 77 479 23
40 % 77 479 37
30 % 77 479 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 299 32
95 % 65 299 41 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 65 299 47
70 % 65 299 59
50 % 77 466 30
40 % 77 466 43
30 % 83 598 37
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 297 37
95 % 65 297 47 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 65 297 52
70 % 65 301 56
50 % 65 310 90
40 % 65 310 111
30 % 65 310 124
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 303 26
95 % 67 306 35 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 67 306 39
70 % 67 306 50
50 % 82 474 25
40 % 82 479 36
30 % 82 479 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 293 39
95 % 65 298 43 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 65 298 48
70 % 65 298 60
50 % 65 308 92
40 % 77 464 45
30 % 77 464 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 269 45
95 % 65 295 50 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 65 295 55
70 % 65 295 66
50 % 65 295 95
40 % 65 295 117
30 % 65 295 130
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 246 51
95 % 58 252 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 58 252 69
70 % 58 252 83
50 % 58 252 114
40 % 58 252 137
30 % 58 252 146
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 301 29
95 % 66 301 38 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 66 301 43
70 % 66 301 55
50 % 78 468 27
40 % 78 471 38
30 % 78 471 57
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 298 31
95 % 65 299 40 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.6
PDBFlex
90 % 65 299 45
70 % 65 299 58
50 % 77 452 34
40 % 77 458 46
30 % 77 458 64
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 258 49
95 % 65 297 49 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 65 297 54
70 % 65 297 65
50 % 65 297 94
40 % 65 297 115
30 % 65 297 129
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 288 43
95 % 65 288 53 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 65 288 59
70 % 65 288 71
50 % 65 288 99
40 % 65 288 121
30 % 65 288 131
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 251 50
95 % 58 251 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 58 251 70
70 % 58 251 84
50 % 60 327 84
40 % 60 327 102
30 % 60 327 115
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 299 30
95 % 65 299 39 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 65 299 44
70 % 65 299 57
50 % 77 462 29
40 % 77 468 40
30 % 77 468 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 298 35
95 % 65 298 44 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 65 298 49
70 % 65 298 61
50 % 78 463 31
40 % 78 463 44
30 % 78 465 61
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 303 27
95 % 72 309 34 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 72 309 38
70 % 72 309 49
50 % 72 309 89
40 % 72 309 110
30 % 84 398 89
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 303 28
95 % 66 303 37 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 66 303 41
70 % 66 303 53
50 % 77 401 62
40 % 77 407 71
30 % 77 407 86
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 298 34
95 % 66 298 42 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 66 302 42
70 % 66 302 54
50 % 80 467 26
40 % 88 614 18
30 % 88 614 32
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 202 82
95 % 65 298 46 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 65 298 51
70 % 65 298 63
50 % 77 456 33
40 % 77 457 47
30 % 83 596 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 40 1i, 2i 30S ribosomal protein S9 274
2 5J8B 42 i 30S ribosomal protein S9 274
3 4W2F 9 AI, CI 30S Ribosomal Protein S9 274
4 6CFL 40 1i, 2i 30S ribosomal protein S9 274
5 6CAE 40 1i, 2i 30S ribosomal protein S9 274
6 4Y4P 40 1i, 2i 30S ribosomal protein S9 274
7 5FDV 41 1i, 2i 30S ribosomal protein S9 274
8 5J4B 40 1i, 2i 30S ribosomal protein S9 274
9 4W2G 9 AI, CI 30S Ribosomal Protein S9 274
10 6CFK 40 1i, 2i 30S ribosomal protein S9 274
11 5W4K 40 1i, 2i 30S ribosomal protein S9 274
12 4LFB 9 I ribosomal protein S9 274
13 1VY4 9 AI, CI 30S ribosomal protein S9 274
14 5FDU 40 1i, 2i 30S ribosomal protein S9 274
15 4W2I 9 AI, CI 30S Ribosomal Protein S9 274
16 1VY5 9 AI, CI 30S ribosomal protein S9 274
17 5HCQ 40 1i, 2i 30S ribosomal protein S9 274
18 4WQF 42 BI, DI 30S ribosomal protein S9 274
19 4W2H 9 AI, CI 30S Ribosomal Protein S9 274
20 4WPO 42 BI, DI 30S ribosomal protein S9 274
21 4V8I 9 AI, CI 30S Ribosomal Protein S9 274
22 4JI1 9 I RIBOSOMAL PROTEIN S9 274
23 4Z3S 40 1i, 2i 30S ribosomal protein S9 274
24 5DOY 40 1i, 2i 30S Ribosomal Protein S9 274
25 5HD1 40 1i, 2i 30S ribosomal protein S9 274
26 4DR6 9 I 30S ribosomal protein S9 274
27 4LF7 9 I ribosomal protein S9 274
28 4LF8 9 I ribosomal protein S9 274
29 5WIS 40 1i, 2i 30S ribosomal protein S9 274
30 4WSD 9 82, 8E 30S ribosomal protein S9 274
31 4WQU 42 BI, DI 30S ribosomal protein S9 274
32 5WIT 40 1i, 2i 30S ribosomal protein S9 274
33 5E81 9 82, 8E 30S ribosomal protein S9 274
34 6GSJ 9 82, 8E 30S ribosomal protein S9 274
35 6CFJ 40 1i, 2i 30S ribosomal protein S9 274
36 4Z8C 40 1i, 2i 30S ribosomal protein S9 274
37 5HCR 40 1i, 2i 30S ribosomal protein S9 274
38 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 274
39 4DV6 9 I ribosomal protein S9 274
40 5IBB 9 82, 8E 30S ribosomal protein S9 274
41 4DR5 9 I 30S ribosomal protein S9 274
42 5J4C 40 1i, 2i 30S ribosomal protein S9 274
43 4DR2 9 I 30S ribosomal protein S9 274
44 4WRO 13 8E 30S ribosomal protein S9 274
45 4WQ1 9 82, 8E 30S ribosomal protein S9 274
46 4LF9 9 I ribosomal protein S9 274
47 4WQY 42 BI, DI 30S ribosomal protein S9 274
48 4DUY 9 I ribosomal protein S9 274
49 4DV7 9 I ribosomal protein S9 274
50 4WRA 9 82, 8E 30S ribosomal protein S9 274
51 5IB7 9 82, 8E 30S ribosomal protein S9 274
52 4X64 9 I 30S ribosomal protein S9 274
53 5HCP 40 1i, 2i 30S ribosomal protein S9 274
54 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
55 5WNT 9 I RIBOSOMAL PROTEIN S9 274
56 4DR3 9 I 30S ribosomal protein S9 274
57 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 274
58 4JI3 9 I RIBOSOMAL PROTEIN S9 274
59 4WQR 9 82, 8E 30S ribosomal protein S9 274
60 4JI6 9 I RIBOSOMAL PROTEIN S9 274
61 4JI8 9 I RIBOSOMAL PROTEIN S9 274
62 5IB8 9 82, 8E 30S ribosomal protein S9 274
63 4V9R 9 AI, CI 30S Ribosomal Protein S9 274
64 5EL6 9 82, 8E 30S ribosomal protein S9 274
65 5EL7 9 82, 8E 30S ribosomal protein S9 274
66 5VP2 40 1i, 2i 30S ribosomal protein S9 274
67 4LF4 9 I ribosomal protein S9 274
68 5DFE 43 QI, XI 30S ribosomal protein S9 274
69 5NDK 9 82, 8E 30S ribosomal protein S9 274
70 4LF6 9 I ribosomal protein S9 274
71 4JI7 9 I RIBOSOMAL PROTEIN S9 274
72 4WU1 9 82, 8E 30S ribosomal protein S9 274
73 5EL4 9 82, 8E 30S ribosomal protein S9 274
74 5WNV 9 I 30S ribosomal protein S9 274
75 4WR6 9 82, 8E 30S ribosomal protein S9 274
76 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
77 5HAU 42 1i, 2i 30S ribosomal protein S9 274
78 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 274
79 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
80 4V95 9 AI, CI 30S Ribosomal Protein S9 274
81 1VY7 9 AI, CI 30S ribosomal protein S9 274
82 5E7K 9 82, 8E 30S ribosomal protein S9 274
83 5EL5 9 82, 8E 30S ribosomal protein S9 274
84 6FKR 40 1i, 2i 30S ribosomal protein S9 274
85 4LNT 9 QI, XI 30S ribosomal protein S9 274
86 4DR1 9 I 30S ribosomal protein S9 274
87 4LFA 9 I ribosomal protein S9 274
88 4DV4 9 I ribosomal protein S9 274
89 4YZV 9 QI, XI 30S ribosomal protein S9 274
90 4JI0 9 I ribosomal protein S9 274
91 5IWA 8 I 30S ribosomal protein S9 274
92 4V9S 9 AI, CI 30S Ribosomal Protein S9 274
93 4JI2 9 I RIBOSOMAL PROTEIN S9 274
94 4DR7 9 I 30S ribosomal protein S9 274
95 4DUZ 9 I ribosomal protein S9 274
96 5NDJ 9 82, 8E 30S ribosomal protein S9 274
97 4X65 9 I 30S ribosomal protein S9 274
98 4V8G 9 AI, CI 30S Ribosomal Protein S9 274
99 4DV3 9 I ribosomal protein S9 274
100 4DV5 9 I ribosomal protein S9 274
101 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 274
102 4LFC 9 I ribosomal protein S9 274
103 4WZO 9 82, 8E 30S ribosomal protein S9 274
104 4JI4 9 I RIBOSOMAL PROTEIN S9 274
105 1VY6 9 AI, CI 30S ribosomal protein S9 274
106 5WNP 9 I 30S ribosomal protein S9 274
107 4DV0 9 I ribosomal protein S9 274
108 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
109 4V6F 39 BL, CL 30S ribosomal protein S9 274
110 4X62 9 I 30S ribosomal protein S9 274
111 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
112 4DV2 9 I ribosomal protein S9 274
113 4DV1 9 I ribosomal protein S9 274
114 5WNU 9 I 30S ribosomal protein S9 274
115 5F8K 40 1i, 2i 30S ribosomal protein S9 274
116 4V8H 9 AI, CI 30S Ribosomal Protein S9 274
117 4JI5 9 I RIBOSOMAL PROTEIN S9 274
118 4W2E 42 i 30S ribosomal protein S9 274
119 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 274
120 5BR8 9 I 30S ribosomal protein S9 274
121 4LF5 9 I ribosomal protein S9 274
122 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
123 6GSK 9 82, 8E 30S ribosomal protein S9 274
124 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 274
125 5J30 40 QI, XI 30S ribosomal protein S9 274
126 4DR4 9 I 30S ribosomal protein S9 274
127 4WZD 9 82, 8E 30S ribosomal protein S9 274
128 4X66 9 I 30S ribosomal protein S9 274
129 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 274
130 4W4G 9 QI, XI 30S ribosomal protein S9 274
131 4NXM 9 I ribosomal protein S9 274
132 4YPB 9 QI, XI 30S ribosomal protein S9 274
133 4ZER 40 1i, 2i 30S ribosomal protein S9 274
134 4WT1 9 82, 8E 30S ribosomal protein S9 274
135 5DOX 40 1i, 2i 30S ribosomal protein S9 274
136 4NXN 9 I ribosomal protein S9 274
137 4LT8 9 QI, XI 30S ribosomal protein S9 274
138 5WNQ 9 I 30S ribosomal protein S9 274
139 4V7L 9 AI, CI 30S ribosomal protein S9 274
140 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
141 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
142 4V7J 8 Ai, Bi 30S ribosomal protein S9 274
143 5J3C 40 QI, XI 30S ribosomal protein S9 274
144 4L47 9 QI, XI 30S ribosomal protein S9 274
145 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
146 4ZSN 9 QI, XI 30S ribosomal protein S9 274
147 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
148 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
149 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
150 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
151 4V97 9 AI, CI 30S ribosomal protein S9 274
152 4V7M 9 AI, CI 30S ribosomal protein S9 274
153 4WSM 9 82, 8E 30S ribosomal protein S9 274
154 4TUD 9 QI, XI 30S ribosomal protein S9 274
155 5WNR 9 I 30S ribosomal protein S9 274
156 4V6A 9 AI, CI 30S ribosomal protein S9 274
157 4TUE 9 QI, XI 30S ribosomal protein S9 274
158 4TUA 9 QI, XI 30S ribosomal protein S9 274
159 5WNS 9 I 30S ribosomal protein S9 274
160 4V7K 8 Ai, Bi 30S ribosomal protein S9 274
161 4YY3 9 I 30S ribosomal protein S9 274
162 4TUC 9 QI, XI 30S ribosomal protein S9 274
163 4YHH 9 I 30S ribosomal protein S9 274
164 4TUB 9 QI, XI 30S ribosomal protein S9 274
165 4P70 9 QI, XI 30S ribosomal protein S9 274
166 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
167 4LSK 9 QI, XI 30S ribosomal protein S9 274
168 4P6F 9 QI, XI 30S ribosomal protein S9 274
169 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
170 1VVJ 9 QI, XI 30S ribosomal protein S9 274
171 4LFZ 9 QI, XI 30S ribosomal protein S9 274
172 5CZP 40 QI, XI 30S ribosomal protein S9 274
173 4OX9 9 I 30S ribosomal protein S9 274
174 4L71 9 QI, XI 30S ribosomal protein S9 274
175 4V8J 9 AI, CI 30S ribosomal protein S9 274
176 4LEL 9 QI, XI 30S ribosomal protein S9 274
177 4V9L 8 AI, CI 30S ribosomal protein S9 274
178 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
179 4V9M 8 AI, CI 30S ribosomal protein S9 274
180 4W29 8 AI, CI 30S ribosomal protein S9 274
181 4V4Y 11 AL 30S ribosomal protein S9 274
182 4V4X 11 AL 30S ribosomal protein S9 274
183 4V4Z 12 AL 30S ribosomal protein S9 274
184 6GSL 9 82, 8E 30S ribosomal protein S9 274
185 5OT7 15 H 30S ribosomal protein S9 274
186 5UQ7 40 i 30S ribosomal protein S9 274
187 5UQ8 40 i 30S ribosomal protein S9 274
188 5LMN 9 I 30S ribosomal protein S9 Uniprot code P80374 274
189 5LMO 9 I 30S ribosomal protein S9 274
190 5LMP 9 I 30S ribosomal protein S9 274
191 5LMQ 9 I 30S ribosomal protein S9 274
192 5LMR 9 I 30S ribosomal protein S9 274
193 5LMS 9 I 30S ribosomal protein S9 274
194 5LMT 9 I 30S ribosomal protein S9 274
195 5LMU 9 I 30S ribosomal protein S9 274
196 5LMV 9 I 30S ribosomal protein S9 274
197 5IMQ 16 M 30S ribosomal protein S9 274
198 5IMR 9 M 30S ribosomal protein S9 274
199 5A9Z 42 BM 30S ribosomal protein S9 274
200 5AA0 42 BM 30S ribosomal protein S9 274
201 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 274
202 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 274