Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 270 38
95 % 57 271 53 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 57 271 57
70 % 57 271 69
50 % 75 432 26
40 % 75 432 40
30 % 81 545 34
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 272 35
95 % 57 272 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 57 272 53
70 % 57 272 65
50 % 69 426 33
40 % 77 557 19
30 % 77 557 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23216
95 % 57 279 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 57 279 44
70 % 69 430 18
50 % 69 443 24
40 % 69 443 38
30 % 69 443 57
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 273 33
95 % 57 273 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 57 273 51
70 % 57 273 62
50 % 69 430 32
40 % 69 430 45
30 % 75 546 37
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 271 36
95 % 57 271 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 57 271 59
70 % 57 284 54
50 % 57 284 92
40 % 57 284 115
30 % 57 284 124
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 275 30
95 % 59 280 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 59 280 43
70 % 59 280 55
50 % 74 439 25
40 % 74 444 37
30 % 74 444 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 267 41
95 % 57 272 51
90 % 57 272 55
70 % 57 272 67
50 % 57 282 93
40 % 57 282 116
30 % 69 423 65
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 179 61
95 % 57 266 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 57 270 60
70 % 57 270 70
50 % 57 270 97
40 % 57 270 120
30 % 57 270 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 186 59
95 % 51 237 66 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 51 237 70
70 % 51 237 84
50 % 51 237 117
40 % 51 237 140
30 % 51 237 145
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 275 29
95 % 58 275 43 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 58 275 48
70 % 58 275 59
50 % 70 432 29
40 % 70 435 41
30 % 70 435 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 272 31
95 % 57 273 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 57 273 49
70 % 57 273 60
50 % 69 419 35
40 % 69 424 46
30 % 69 424 63
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 220 53
95 % 57 271 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 57 271 56
70 % 57 271 68
50 % 57 271 96
40 % 57 271 119
30 % 57 271 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 262 43
95 % 57 262 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 57 262 63
70 % 57 262 75
50 % 57 262 102
40 % 57 262 125
30 % 57 262 133
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 236 49
95 % 51 236 67 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 51 236 71
70 % 51 236 85
50 % 53 310 86
40 % 53 310 106
30 % 53 310 118
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 265 42
95 % 57 273 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 57 273 50
70 % 57 273 61
50 % 69 427 30
40 % 69 432 43
30 % 69 432 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 272 34
95 % 57 272 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 57 272 52
70 % 57 272 63
50 % 70 427 31
40 % 70 427 44
30 % 70 429 62
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 277 27
95 % 64 283 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 64 283 42
70 % 64 283 52
50 % 64 283 91
40 % 64 283 114
30 % 76 366 94
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 276 28
95 % 58 277 40 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 58 277 45
70 % 58 277 56
50 % 69 367 66
40 % 69 372 84
30 % 69 372 96
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 272 32
95 % 58 272 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 58 276 46
70 % 58 276 57
50 % 72 432 28
40 % 73 438 39
30 % 80 562 32
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 181 71
95 % 57 272 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 57 272 54
70 % 57 272 66
50 % 69 421 34
40 % 69 421 47
30 % 75 546 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 40 1i, 2i 30S ribosomal protein S9 274
2 5J8B 42 i 30S ribosomal protein S9 274
3 4W2F 9 AI, CI 30S Ribosomal Protein S9 274
4 4Y4P 40 1i, 2i 30S ribosomal protein S9 274
5 5FDV 41 1i, 2i 30S ribosomal protein S9 274
6 5J4B 40 1i, 2i 30S ribosomal protein S9 274
7 4W2G 9 AI, CI 30S Ribosomal Protein S9 274
8 5W4K 40 1i, 2i 30S ribosomal protein S9 274
9 4LFB 9 I ribosomal protein S9 274
10 1VY4 9 AI, CI 30S ribosomal protein S9 274
11 5FDU 40 1i, 2i 30S ribosomal protein S9 274
12 4W2I 9 AI, CI 30S Ribosomal Protein S9 274
13 1VY5 9 AI, CI 30S ribosomal protein S9 274
14 5HCQ 40 1i, 2i 30S ribosomal protein S9 274
15 4WQF 42 BI, DI 30S ribosomal protein S9 274
16 4W2H 9 AI, CI 30S Ribosomal Protein S9 274
17 4WPO 42 BI, DI 30S ribosomal protein S9 274
18 4V8I 9 AI, CI 30S Ribosomal Protein S9 274
19 4JI1 9 I RIBOSOMAL PROTEIN S9 274
20 4Z3S 40 1i, 2i 30S ribosomal protein S9 274
21 5DOY 40 1i, 2i 30S Ribosomal Protein S9 274
22 5HD1 40 1i, 2i 30S ribosomal protein S9 274
23 4DR6 9 I 30S ribosomal protein S9 274
24 4LF7 9 I ribosomal protein S9 274
25 4LF8 9 I ribosomal protein S9 274
26 4WSD 9 82, 8E 30S ribosomal protein S9 274
27 4WQU 42 BI, DI 30S ribosomal protein S9 274
28 5E81 9 82, 8E 30S ribosomal protein S9 274
29 4Z8C 40 1i, 2i 30S ribosomal protein S9 274
30 5HCR 40 1i, 2i 30S ribosomal protein S9 274
31 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 274
32 4DV6 9 I ribosomal protein S9 274
33 5IBB 9 82, 8E 30S ribosomal protein S9 274
34 4DR5 9 I 30S ribosomal protein S9 274
35 5J4C 40 1i, 2i 30S ribosomal protein S9 274
36 4DR2 9 I 30S ribosomal protein S9 274
37 4WRO 13 8E 30S ribosomal protein S9 274
38 4WQ1 9 82, 8E 30S ribosomal protein S9 274
39 4LF9 9 I ribosomal protein S9 274
40 4WQY 42 BI, DI 30S ribosomal protein S9 274
41 4DUY 9 I ribosomal protein S9 274
42 4DV7 9 I ribosomal protein S9 274
43 4WRA 9 82, 8E 30S ribosomal protein S9 274
44 5IB7 9 82, 8E 30S ribosomal protein S9 274
45 4X64 9 I 30S ribosomal protein S9 274
46 5HCP 40 1i, 2i 30S ribosomal protein S9 274
47 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
48 4DR3 9 I 30S ribosomal protein S9 274
49 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 274
50 4JI3 9 I RIBOSOMAL PROTEIN S9 274
51 4WQR 9 82, 8E 30S ribosomal protein S9 274
52 4JI6 9 I RIBOSOMAL PROTEIN S9 274
53 4JI8 9 I RIBOSOMAL PROTEIN S9 274
54 5IB8 9 82, 8E 30S ribosomal protein S9 274
55 4V9R 9 AI, CI 30S Ribosomal Protein S9 274
56 5EL6 9 82, 8E 30S ribosomal protein S9 274
57 5EL7 9 82, 8E 30S ribosomal protein S9 274
58 5VP2 40 1i, 2i 30S ribosomal protein S9 274
59 4LF4 9 I ribosomal protein S9 274
60 5DFE 43 QI, XI 30S ribosomal protein S9 274
61 5NDK 9 82, 8E 30S ribosomal protein S9 274
62 4LF6 9 I ribosomal protein S9 274
63 4JI7 9 I RIBOSOMAL PROTEIN S9 274
64 4WU1 9 82, 8E 30S ribosomal protein S9 274
65 5EL4 9 82, 8E 30S ribosomal protein S9 274
66 4WR6 9 82, 8E 30S ribosomal protein S9 274
67 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
68 5HAU 42 1i, 2i 30S ribosomal protein S9 274
69 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 274
70 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
71 4V95 9 AI, CI 30S Ribosomal Protein S9 274
72 1VY7 9 AI, CI 30S ribosomal protein S9 274
73 5E7K 9 82, 8E 30S ribosomal protein S9 274
74 5EL5 9 82, 8E 30S ribosomal protein S9 274
75 4LNT 9 QI, XI 30S ribosomal protein S9 274
76 4DR1 9 I 30S ribosomal protein S9 274
77 4LFA 9 I ribosomal protein S9 274
78 4DV4 9 I ribosomal protein S9 274
79 4YZV 9 QI, XI 30S ribosomal protein S9 274
80 4JI0 9 I ribosomal protein S9 274
81 5IWA 8 I 30S ribosomal protein S9 274
82 4V9S 9 AI, CI 30S Ribosomal Protein S9 274
83 4JI2 9 I RIBOSOMAL PROTEIN S9 274
84 4DR7 9 I 30S ribosomal protein S9 274
85 4DUZ 9 I ribosomal protein S9 274
86 4X65 9 I 30S ribosomal protein S9 274
87 4V8G 9 AI, CI 30S Ribosomal Protein S9 274
88 4DV3 9 I ribosomal protein S9 274
89 4DV5 9 I ribosomal protein S9 274
90 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 274
91 4LFC 9 I ribosomal protein S9 274
92 4WZO 9 82, 8E 30S ribosomal protein S9 274
93 4JI4 9 I RIBOSOMAL PROTEIN S9 274
94 1VY6 9 AI, CI 30S ribosomal protein S9 274
95 4DV0 9 I ribosomal protein S9 274
96 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
97 4V6F 39 BL, CL 30S ribosomal protein S9 274
98 4X62 9 I 30S ribosomal protein S9 274
99 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
100 4DV2 9 I ribosomal protein S9 274
101 4DV1 9 I ribosomal protein S9 274
102 5F8K 40 1i, 2i 30S ribosomal protein S9 274
103 4V8H 9 AI, CI 30S Ribosomal Protein S9 274
104 4JI5 9 I RIBOSOMAL PROTEIN S9 274
105 4W2E 42 i 30S ribosomal protein S9 274
106 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 274
107 5BR8 9 I 30S ribosomal protein S9 274
108 4LF5 9 I ribosomal protein S9 274
109 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
110 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 274
111 5J30 40 QI, XI 30S ribosomal protein S9 274
112 4DR4 9 I 30S ribosomal protein S9 274
113 4WZD 9 82, 8E 30S ribosomal protein S9 274
114 4X66 9 I 30S ribosomal protein S9 274
115 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 274
116 4W4G 9 QI, XI 30S ribosomal protein S9 274
117 4NXM 9 I ribosomal protein S9 274
118 4YPB 9 QI, XI 30S ribosomal protein S9 274
119 4ZER 40 1i, 2i 30S ribosomal protein S9 274
120 4WT1 9 82, 8E 30S ribosomal protein S9 274
121 5DOX 40 1i, 2i 30S ribosomal protein S9 274
122 4NXN 9 I ribosomal protein S9 274
123 4LT8 9 QI, XI 30S ribosomal protein S9 274
124 4V7L 9 AI, CI 30S ribosomal protein S9 274
125 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
126 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
127 4V7J 8 Ai, Bi 30S ribosomal protein S9 274
128 5J3C 40 QI, XI 30S ribosomal protein S9 274
129 4L47 9 QI, XI 30S ribosomal protein S9 274
130 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
131 4ZSN 9 QI, XI 30S ribosomal protein S9 274
132 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
133 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
134 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
135 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
136 4V97 9 AI, CI 30S ribosomal protein S9 274
137 4V7M 9 AI, CI 30S ribosomal protein S9 274
138 4WSM 9 82, 8E 30S ribosomal protein S9 274
139 4TUD 9 QI, XI 30S ribosomal protein S9 274
140 4V6A 9 AI, CI 30S ribosomal protein S9 274
141 4TUE 9 QI, XI 30S ribosomal protein S9 274
142 4TUA 9 QI, XI 30S ribosomal protein S9 274
143 4V7K 8 Ai, Bi 30S ribosomal protein S9 274
144 4YY3 9 I 30S ribosomal protein S9 274
145 4TUC 9 QI, XI 30S ribosomal protein S9 274
146 4YHH 9 I 30S ribosomal protein S9 274
147 4TUB 9 QI, XI 30S ribosomal protein S9 274
148 4P70 9 QI, XI 30S ribosomal protein S9 274
149 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
150 4LSK 9 QI, XI 30S ribosomal protein S9 274
151 4P6F 9 QI, XI 30S ribosomal protein S9 274
152 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
153 1VVJ 9 QI, XI 30S ribosomal protein S9 274
154 4LFZ 9 QI, XI 30S ribosomal protein S9 274
155 5CZP 40 QI, XI 30S ribosomal protein S9 274
156 4OX9 9 I 30S ribosomal protein S9 274
157 4L71 9 QI, XI 30S ribosomal protein S9 274
158 4V8J 9 AI, CI 30S ribosomal protein S9 274
159 4LEL 9 QI, XI 30S ribosomal protein S9 274
160 4V9L 8 AI, CI 30S ribosomal protein S9 274
161 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
162 4V9M 8 AI, CI 30S ribosomal protein S9 274
163 4W29 8 AI, CI 30S ribosomal protein S9 274
164 4V4Y 11 AL 30S ribosomal protein S9 274
165 4V4X 11 AL 30S ribosomal protein S9 274
166 4V4Z 12 AL 30S ribosomal protein S9 274
167 5LMN 9 I 30S ribosomal protein S9 Uniprot code P80374 274
168 5LMO 9 I 30S ribosomal protein S9 274
169 5LMP 9 I 30S ribosomal protein S9 274
170 5LMQ 9 I 30S ribosomal protein S9 274
171 5LMR 9 I 30S ribosomal protein S9 274
172 5LMS 9 I 30S ribosomal protein S9 274
173 5LMT 9 I 30S ribosomal protein S9 274
174 5LMU 9 I 30S ribosomal protein S9 274
175 5LMV 9 I 30S ribosomal protein S9 274
176 5IMQ 16 M 30S ribosomal protein S9 274
177 5IMR 9 M 30S ribosomal protein S9 274
178 5A9Z 42 BM 30S ribosomal protein S9 274
179 5AA0 42 BM 30S ribosomal protein S9 274
180 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 274
181 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 274