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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 87 Members. Sequence cutoff: 100% Cluster size: 108 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 40 1i, 2i 30S ribosomal protein S9 300852  
2 4W2F 9 AI, CI 30S Ribosomal Protein S9 300852  
3 4Y4P 40 1i, 2i 30S ribosomal protein S9 300852  
4 4W2G 9 AI, CI 30S Ribosomal Protein S9 300852  
5 4LFB 9 I ribosomal protein S9 300852  
6 1VY4 9 AI, CI 30S ribosomal protein S9 300852  
7 4W2I 9 AI, CI 30S Ribosomal Protein S9 300852  
8 1VY5 9 AI, CI 30S ribosomal protein S9 300852  
9 4WQF 42 BI, DI 30S ribosomal protein S9 300852  
10 4W2H 9 AI, CI 30S Ribosomal Protein S9 300852  
11 4WPO 42 BI, DI 30S ribosomal protein S9 300852  
12 4V8I 9 AI, CI 30S Ribosomal Protein S9 274  
13 4JI1 9 I RIBOSOMAL PROTEIN S9 300852  
14 4DR6 9 I 30S ribosomal protein S9 300852  
15 4LF7 9 I ribosomal protein S9 300852  
16 4LF8 9 I ribosomal protein S9 300852  
17 4WQU 42 BI, DI 30S ribosomal protein S9 300852  
18 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 300852  
19 4DV6 9 I ribosomal protein S9 300852  
20 4DR5 9 I 30S ribosomal protein S9 300852  
21 4DR2 9 I 30S ribosomal protein S9 300852  
22 4LF9 9 I ribosomal protein S9 300852  
23 4WQY 42 BI, DI 30S ribosomal protein S9 300852  
24 4DUY 9 I ribosomal protein S9 300852  
25 4DV7 9 I ribosomal protein S9 300852  
26 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
27 4DR3 9 I 30S ribosomal protein S9 300852  
28 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
29 4JI3 9 I RIBOSOMAL PROTEIN S9 300852  
30 4JI6 9 I RIBOSOMAL PROTEIN S9 300852  
31 4JI8 9 I RIBOSOMAL PROTEIN S9 300852  
32 4V9R 9 AI, CI 30S Ribosomal Protein S9 274  
33 4LF4 9 I ribosomal protein S9 300852  
34 4LF6 9 I ribosomal protein S9 300852  
35 4JI7 9 I RIBOSOMAL PROTEIN S9 300852  
36 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
37 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 300852  
38 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 300852  
39 4V95 9 AI, CI 30S Ribosomal Protein S9 274  
40 1VY7 9 AI, CI 30S ribosomal protein S9 300852  
41 4LNT 9 QI, XI 30S ribosomal protein S9 300852  
42 4DR1 9 I 30S ribosomal protein S9 300852  
43 4LFA 9 I ribosomal protein S9 300852  
44 4DV4 9 I ribosomal protein S9 300852  
45 4JI0 9 I ribosomal protein S9 300852  
46 4V9S 9 AI, CI 30S Ribosomal Protein S9 274  
47 4JI2 9 I RIBOSOMAL PROTEIN S9 300852  
48 4DR7 9 I 30S ribosomal protein S9 300852  
49 4DUZ 9 I ribosomal protein S9 300852  
50 4V8G 9 AI, CI 30S Ribosomal Protein S9 300852  
51 4DV3 9 I ribosomal protein S9 300852  
52 4DV5 9 I ribosomal protein S9 300852  
53 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 300852  
54 4LFC 9 I ribosomal protein S9 300852  
55 4JI4 9 I RIBOSOMAL PROTEIN S9 300852  
56 1VY6 9 AI, CI 30S ribosomal protein S9 300852  
57 4DV0 9 I ribosomal protein S9 300852  
58 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
59 4V6F 39 BL, CL 30S ribosomal protein S9 300852  
60 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 300852  
61 4DV2 9 I ribosomal protein S9 300852  
62 4DV1 9 I ribosomal protein S9 300852  
63 4V8H 9 AI, CI 30S Ribosomal Protein S9 300852  
64 4JI5 9 I RIBOSOMAL PROTEIN S9 300852  
65 4W2E 42 i 30S ribosomal protein S9 300852  
66 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 300852  
67 4LF5 9 I ribosomal protein S9 300852  
68 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
69 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 300852  
70 4DR4 9 I 30S ribosomal protein S9 300852  
71 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 300852  
72 4NXM 9 I ribosomal protein S9 300852  
73 4NXN 9 I ribosomal protein S9 300852  
74 4LT8 9 QI, XI 30S ribosomal protein S9 300852  
75 4V7L 9 AI, CI 30S ribosomal protein S9 300852  
76 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
77 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
78 4V7J 8 Ai, Bi 30S ribosomal protein S9 300852  
79 4L47 9 QI, XI 30S ribosomal protein S9 300852  
80 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
81 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
82 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
83 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 300852  
84 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
85 4V97 9 AI, CI 30S ribosomal protein S9 300852  
86 4V7M 9 AI, CI 30S ribosomal protein S9 300852  
87 4V6A 9 AI, CI 30S ribosomal protein S9 300852  
88 4V7K 8 Ai, Bi 30S ribosomal protein S9 300852  
89 4P70 9 QI, XI 30S ribosomal protein S9 300852  
90 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
91 4LSK 9 QI, XI 30S ribosomal protein S9 300852  
92 4P6F 9 QI, XI 30S ribosomal protein S9 300852  
93 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
94 1VVJ 9 QI, XI 30S ribosomal protein S9 300852  
95 4LFZ 9 QI, XI 30S ribosomal protein S9 300852  
96 4OX9 9 I 30S ribosomal protein S9 300852  
97 4L71 9 QI, XI 30S ribosomal protein S9 300852  
98 4V8J 9 AI, CI 30S ribosomal protein S9 300852  
99 4LEL 9 QI, XI 30S ribosomal protein S9 300852  
100 4V9L 8 AI, CI 30S ribosomal protein S9 262724  
101 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 300852  
102 4V9M 8 AI, CI 30S ribosomal protein S9 262724  
103 4W29 8 AI, CI 30S ribosomal protein S9 262724  
104 4V4Y 11 AL 30S ribosomal protein S9 300852  
105 4V4X 11 AL 30S ribosomal protein S9 300852  
106 4V4Z 12 AL 30S ribosomal protein S9 300852  
107 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
108 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 300852  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 196 28
95% 35 197 44
90% 35 197 46
70% 35 197 58
50% 46 280 35
40% 46 280 45
30% 51 331 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 24
95% 35 198 40
90% 35 198 42
70% 35 198 54
50% 40 274 42
40% 47 330 35
30% 47 330 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17888
95% 35 205 31
90% 35 205 33
70% 40 286 24
50% 40 286 34
40% 40 286 44
30% 40 286 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 21
95% 35 199 37
90% 35 199 39
70% 35 199 51
50% 40 279 39
40% 40 279 51
30% 45 331 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 25
95% 35 197 45
90% 35 197 47
70% 35 197 59
50% 35 197 92
40% 35 197 114
30% 35 197 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 201 19
95% 37 206 30
90% 37 206 32
70% 37 206 43
50% 45 287 33
40% 45 287 43
30% 45 287 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 193 29
95% 35 198 42
90% 35 198 44
70% 35 198 56
50% 35 198 90
40% 35 198 112
30% 40 277 75
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 112 66
95% 35 192 49
90% 35 196 48
70% 35 196 60
50% 35 196 93
40% 35 196 116
30% 35 196 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 58
95% 32 174 71
90% 32 174 75
70% 32 174 88
50% 32 174 128
40% 32 174 146
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 176 45
95% 33 176 67
90% 33 176 70
70% 33 176 83
50% 41 277 38
40% 41 277 48
30% 41 277 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 22
95% 35 199 34
90% 35 199 37
70% 35 199 48
50% 35 199 88
40% 40 274 53
30% 40 274 74
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 148 54
95% 35 197 43
90% 35 197 45
70% 35 197 57
50% 35 197 91
40% 35 197 113
30% 35 197 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 188 31
95% 35 188 51
90% 35 188 54
70% 35 188 66
50% 35 188 111
40% 35 188 133
30% 35 188 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 90
50% 33 213 75
40% 33 213 102
30% 33 213 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 191 30
95% 35 199 35
90% 35 199 38
70% 35 199 49
50% 40 274 40
40% 40 275 52
30% 40 275 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 23
95% 35 198 39
90% 35 198 41
70% 35 198 53
50% 41 278 37
40% 41 278 47
30% 41 280 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 17
95% 42 209 29
90% 42 209 31
70% 42 209 42
50% 42 209 80
40% 42 209 106
30% 48 247 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 18
95% 36 203 32
90% 36 203 34
70% 36 203 45
50% 41 245 53
40% 41 246 70
30% 41 246 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 198 20
95% 36 198 36
90% 36 202 35
70% 36 202 46
50% 43 280 36
40% 44 282 46
30% 50 335 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 108 87
95% 35 198 41
90% 35 198 43
70% 35 198 55
50% 40 274 41
40% 40 274 54
30% 45 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.