Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 267 37
95 % 56 268 51
90 % 56 268 54
70 % 56 268 65
50 % 74 394 25
40 % 74 394 37
30 % 79 490 29
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 35
95 % 56 269 47
90 % 56 269 50
70 % 56 269 60
50 % 68 388 34
40 % 75 487 18
30 % 75 487 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21334
95 % 56 276 36
90 % 56 276 40
70 % 68 401 20
50 % 68 403 23
40 % 68 403 34
30 % 68 403 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 270 33
95 % 56 270 44
90 % 56 270 48
70 % 56 270 57
50 % 68 393 32
40 % 68 393 44
30 % 73 491 32
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 268 36
95 % 56 268 52
90 % 56 268 55
70 % 56 270 58
50 % 56 270 87
40 % 56 270 108
30 % 56 270 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 272 28
95 % 58 277 35
90 % 58 277 39
70 % 58 277 50
50 % 73 401 24
40 % 73 404 33
30 % 73 404 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 264 38
95 % 56 269 49
90 % 56 269 52
70 % 56 269 62
50 % 56 271 86
40 % 56 271 106
30 % 68 389 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 176 55
95 % 56 263 53
90 % 56 267 56
70 % 56 267 66
50 % 56 267 90
40 % 56 267 111
30 % 56 267 123
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 183 53
95 % 50 234 62
90 % 50 234 66
70 % 50 234 77
50 % 50 234 103
40 % 50 234 129
30 % 50 234 140
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 272 27
95 % 57 272 40
90 % 57 272 45
70 % 57 272 54
50 % 69 393 28
40 % 69 393 39
30 % 69 393 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 31
95 % 56 270 41
90 % 56 270 46
70 % 56 270 55
50 % 68 387 33
40 % 68 390 42
30 % 68 390 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 217 49
95 % 56 268 50
90 % 56 268 53
70 % 56 268 64
50 % 56 268 89
40 % 56 268 110
30 % 56 268 122
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 259 41
95 % 56 259 56
90 % 56 259 59
70 % 56 259 69
50 % 56 259 94
40 % 56 259 116
30 % 56 259 129
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 233 45
95 % 50 233 63
90 % 50 233 67
70 % 50 233 78
50 % 52 301 78
40 % 52 301 96
30 % 52 301 113
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 262 39
95 % 56 270 42
90 % 56 270 47
70 % 56 270 56
50 % 68 389 31
40 % 68 392 40
30 % 68 392 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 34
95 % 56 269 46
90 % 56 269 49
70 % 56 269 59
50 % 69 393 29
40 % 69 393 41
30 % 69 395 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 274 24
95 % 63 280 33
90 % 63 280 38
70 % 63 280 49
50 % 63 280 83
40 % 63 280 102
30 % 75 334 87
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 273 26
95 % 57 274 37
90 % 57 274 41
70 % 57 274 51
50 % 68 336 65
40 % 68 339 75
30 % 68 339 89
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 269 32
95 % 57 269 43
90 % 57 273 42
70 % 57 273 52
50 % 71 394 26
40 % 72 398 36
30 % 78 500 28
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 178 65
95 % 56 269 48
90 % 56 269 51
70 % 56 269 61
50 % 68 388 35
40 % 68 388 45
30 % 73 488 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 40 1i, 2i 30S ribosomal protein S9 274
2 5J8B 42 i 30S ribosomal protein S9 274
3 4W2F 9 AI, CI 30S Ribosomal Protein S9 274
4 4Y4P 40 1i, 2i 30S ribosomal protein S9 274
5 5FDV 41 1i, 2i 30S ribosomal protein S9 274
6 5J4B 40 1i, 2i 30S ribosomal protein S9 274
7 4W2G 9 AI, CI 30S Ribosomal Protein S9 274
8 4LFB 9 I ribosomal protein S9 274
9 1VY4 9 AI, CI 30S ribosomal protein S9 274
10 5FDU 40 1i, 2i 30S ribosomal protein S9 274
11 4W2I 9 AI, CI 30S Ribosomal Protein S9 274
12 1VY5 9 AI, CI 30S ribosomal protein S9 274
13 5HCQ 40 1i, 2i 30S ribosomal protein S9 274
14 4WQF 42 BI, DI 30S ribosomal protein S9 274
15 4W2H 9 AI, CI 30S Ribosomal Protein S9 274
16 4WPO 42 BI, DI 30S ribosomal protein S9 274
17 4V8I 9 AI, CI 30S Ribosomal Protein S9 274
18 4JI1 9 I RIBOSOMAL PROTEIN S9 274
19 4Z3S 40 1i, 2i 30S ribosomal protein S9 274
20 5DOY 40 1i, 2i 30S Ribosomal Protein S9 274
21 5HD1 40 1i, 2i 30S ribosomal protein S9 274
22 4DR6 9 I 30S ribosomal protein S9 274
23 4LF7 9 I ribosomal protein S9 274
24 4LF8 9 I ribosomal protein S9 274
25 4WSD 9 82, 8E 30S ribosomal protein S9 274
26 4WQU 42 BI, DI 30S ribosomal protein S9 274
27 5E81 9 82, 8E 30S ribosomal protein S9 274
28 4Z8C 40 1i, 2i 30S ribosomal protein S9 274
29 5HCR 40 1i, 2i 30S ribosomal protein S9 274
30 2UUB 9 I 30S RIBOSOMAL PROTEIN S9 274
31 4DV6 9 I ribosomal protein S9 274
32 5IBB 9 82, 8E 30S ribosomal protein S9 274
33 4DR5 9 I 30S ribosomal protein S9 274
34 5J4C 40 1i, 2i 30S ribosomal protein S9 274
35 4DR2 9 I 30S ribosomal protein S9 274
36 4WRO 13 8E 30S ribosomal protein S9 274
37 4WQ1 9 82, 8E 30S ribosomal protein S9 274
38 4LF9 9 I ribosomal protein S9 274
39 4WQY 42 BI, DI 30S ribosomal protein S9 274
40 4DUY 9 I ribosomal protein S9 274
41 4DV7 9 I ribosomal protein S9 274
42 4WRA 9 82, 8E 30S ribosomal protein S9 274
43 5IB7 9 82, 8E 30S ribosomal protein S9 274
44 4X64 9 I 30S ribosomal protein S9 274
45 5HCP 40 1i, 2i 30S ribosomal protein S9 274
46 4V8D 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
47 4DR3 9 I 30S ribosomal protein S9 274
48 4V90 9 AI 30S RIBOSOMAL PROTEIN S9 274
49 4JI3 9 I RIBOSOMAL PROTEIN S9 274
50 4WQR 9 82, 8E 30S ribosomal protein S9 274
51 4JI6 9 I RIBOSOMAL PROTEIN S9 274
52 4JI8 9 I RIBOSOMAL PROTEIN S9 274
53 5IB8 9 82, 8E 30S ribosomal protein S9 274
54 4V9R 9 AI, CI 30S Ribosomal Protein S9 274
55 5EL6 9 82, 8E 30S ribosomal protein S9 274
56 5EL7 9 82, 8E 30S ribosomal protein S9 274
57 4LF4 9 I ribosomal protein S9 274
58 5DFE 43 QI, XI 30S ribosomal protein S9 274
59 4LF6 9 I ribosomal protein S9 274
60 4JI7 9 I RIBOSOMAL PROTEIN S9 274
61 4WU1 9 82, 8E 30S ribosomal protein S9 274
62 5EL4 9 82, 8E 30S ribosomal protein S9 274
63 4WR6 9 82, 8E 30S ribosomal protein S9 274
64 4V8B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
65 5HAU 42 1i, 2i 30S ribosomal protein S9 274
66 2UUA 9 I 30S RIBOSOMAL PROTEIN S9 274
67 4V87 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
68 4V95 9 AI, CI 30S Ribosomal Protein S9 274
69 1VY7 9 AI, CI 30S ribosomal protein S9 274
70 5E7K 9 82, 8E 30S ribosomal protein S9 274
71 5EL5 9 82, 8E 30S ribosomal protein S9 274
72 4LNT 9 QI, XI 30S ribosomal protein S9 274
73 4DR1 9 I 30S ribosomal protein S9 274
74 4LFA 9 I ribosomal protein S9 274
75 4DV4 9 I ribosomal protein S9 274
76 4YZV 9 QI, XI 30S ribosomal protein S9 274
77 4JI0 9 I ribosomal protein S9 274
78 5IWA 8 I 30S ribosomal protein S9 274
79 4V9S 9 AI, CI 30S Ribosomal Protein S9 274
80 4JI2 9 I RIBOSOMAL PROTEIN S9 274
81 4DR7 9 I 30S ribosomal protein S9 274
82 4DUZ 9 I ribosomal protein S9 274
83 4X65 9 I 30S ribosomal protein S9 274
84 4V8G 9 AI, CI 30S Ribosomal Protein S9 274
85 4DV3 9 I ribosomal protein S9 274
86 4DV5 9 I ribosomal protein S9 274
87 2UUC 9 I 30S RIBOSOMAL PROTEIN S9 274
88 4LFC 9 I ribosomal protein S9 274
89 4WZO 9 82, 8E 30S ribosomal protein S9 274
90 4JI4 9 I RIBOSOMAL PROTEIN S9 274
91 1VY6 9 AI, CI 30S ribosomal protein S9 274
92 4DV0 9 I ribosomal protein S9 274
93 4V9B 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
94 4V6F 39 BL, CL 30S ribosomal protein S9 274
95 4X62 9 I 30S ribosomal protein S9 274
96 4V8F 39 BL, CL 30S RIBOSOMAL PROTEIN S9 274
97 4DV2 9 I ribosomal protein S9 274
98 4DV1 9 I ribosomal protein S9 274
99 5F8K 40 1i, 2i 30S ribosomal protein S9 274
100 4V8H 9 AI, CI 30S Ribosomal Protein S9 274
101 4JI5 9 I RIBOSOMAL PROTEIN S9 274
102 4W2E 42 i 30S ribosomal protein S9 274
103 4V8C 39 CL, DL 30S RIBOSOMAL PROTEIN S9 274
104 5BR8 9 I 30S ribosomal protein S9 274
105 4LF5 9 I ribosomal protein S9 274
106 4V9A 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
107 4V8E 39 BL, DL 30S RIBOSOMAL PROTEIN S9 274
108 5J30 40 QI, XI 30S ribosomal protein S9 274
109 4DR4 9 I 30S ribosomal protein S9 274
110 4WZD 9 82, 8E 30S ribosomal protein S9 274
111 4X66 9 I 30S ribosomal protein S9 274
112 2UU9 9 I 30S RIBOSOMAL PROTEIN S9 274
113 4W4G 9 QI, XI 30S ribosomal protein S9 274
114 4NXM 9 I ribosomal protein S9 274
115 4YPB 9 QI, XI 30S ribosomal protein S9 274
116 4ZER 40 1i, 2i 30S ribosomal protein S9 274
117 4WT1 9 82, 8E 30S ribosomal protein S9 274
118 5DOX 40 1i, 2i 30S ribosomal protein S9 274
119 4NXN 9 I ribosomal protein S9 274
120 4LT8 9 QI, XI 30S ribosomal protein S9 274
121 4V7L 9 AI, CI 30S ribosomal protein S9 274
122 4V5R 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
123 4V5Q 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
124 4V7J 8 Ai, Bi 30S ribosomal protein S9 274
125 5J3C 40 QI, XI 30S ribosomal protein S9 274
126 4L47 9 QI, XI 30S ribosomal protein S9 274
127 4V5P 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
128 4ZSN 9 QI, XI 30S ribosomal protein S9 274
129 4V8X 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
130 4V5S 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
131 4V6G 9 AL, CL 30S RIBOSOMAL PROTEIN S9 274
132 4V8N 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
133 4V97 9 AI, CI 30S ribosomal protein S9 274
134 4V7M 9 AI, CI 30S ribosomal protein S9 274
135 4WSM 9 82, 8E 30S ribosomal protein S9 274
136 4TUD 9 QI, XI 30S ribosomal protein S9 274
137 4V6A 9 AI, CI 30S ribosomal protein S9 274
138 4TUE 9 QI, XI 30S ribosomal protein S9 274
139 4TUA 9 QI, XI 30S ribosomal protein S9 274
140 4V7K 8 Ai, Bi 30S ribosomal protein S9 274
141 4YY3 9 I 30S ribosomal protein S9 274
142 4TUC 9 QI, XI 30S ribosomal protein S9 274
143 4YHH 9 I 30S ribosomal protein S9 274
144 4TUB 9 QI, XI 30S ribosomal protein S9 274
145 4P70 9 QI, XI 30S ribosomal protein S9 274
146 4V8U 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
147 4LSK 9 QI, XI 30S ribosomal protein S9 274
148 4P6F 9 QI, XI 30S ribosomal protein S9 274
149 4V5F 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
150 1VVJ 9 QI, XI 30S ribosomal protein S9 274
151 4LFZ 9 QI, XI 30S ribosomal protein S9 274
152 5CZP 40 QI, XI 30S ribosomal protein S9 274
153 4OX9 9 I 30S ribosomal protein S9 274
154 4L71 9 QI, XI 30S ribosomal protein S9 274
155 4V8J 9 AI, CI 30S ribosomal protein S9 274
156 4LEL 9 QI, XI 30S ribosomal protein S9 274
157 4V9L 8 AI, CI 30S ribosomal protein S9 274
158 4V5G 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
159 4V9M 8 AI, CI 30S ribosomal protein S9 274
160 4W29 8 AI, CI 30S ribosomal protein S9 274
161 4V4Y 11 AL 30S ribosomal protein S9 274
162 4V4X 11 AL 30S ribosomal protein S9 274
163 4V4Z 12 AL 30S ribosomal protein S9 274
164 5LMN 9 I 30S ribosomal protein S9 Uniprot code P80374 274
165 5LMO 9 I 30S ribosomal protein S9 274
166 5LMP 9 I 30S ribosomal protein S9 274
167 5LMQ 9 I 30S ribosomal protein S9 274
168 5LMR 9 I 30S ribosomal protein S9 274
169 5LMS 9 I 30S ribosomal protein S9 274
170 5LMT 9 I 30S ribosomal protein S9 274
171 5LMU 9 I 30S ribosomal protein S9 274
172 5LMV 9 I 30S ribosomal protein S9 274
173 5IMQ 16 M 30S ribosomal protein S9 274
174 5IMR 9 M 30S ribosomal protein S9 274
175 5A9Z 42 BM 30S ribosomal protein S9 274
176 5AA0 42 BM 30S ribosomal protein S9 274
177 4V5N 9 AI 30S RIBOSOMAL PROTEIN S9 274
178 4V5M 9 AI 30S RIBOSOMAL PROTEIN S9 274