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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 36 Members. Sequence cutoff: 90% Cluster size: 210 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 39 1h, 2h 30S ribosomal protein S8 300852  
2 1AN7 1 A, B RIBOSOMAL PROTEIN S8 274  
3 4W2F 8 AH, CH 30S Ribosomal Protein S8 300852  
4 4Y4P 39 1h, 2h 30S ribosomal protein S8 300852  
5 4W2G 8 AH, CH 30S Ribosomal Protein S8 300852  
6 4LFB 8 H ribosomal protein S8 300852  
7 1VY4 8 AH, CH 30S ribosomal protein S8 300852  
8 4W2I 8 AH, CH 30S Ribosomal Protein S8 300852  
9 1VY5 8 AH, CH 30S ribosomal protein S8 300852  
10 4WQF 41 BH, DH 30S ribosomal protein S8 300852  
11 4W2H 8 AH, CH 30S Ribosomal Protein S8 300852  
12 4WPO 41 BH, DH 30S ribosomal protein S8 300852  
13 4V8I 8 AH, CH 30S Ribosomal Protein S8 274  
14 4JI1 8 H RIBOSOMAL PROTEIN S8 300852  
15 4DR6 8 H 30S ribosomal protein S8 300852  
16 4LF7 8 H ribosomal protein S8 300852  
17 4LF8 8 H ribosomal protein S8 300852  
18 4WQU 41 BH, DH 30S ribosomal protein S8 300852  
19 2VQE 8 H 30S RIBOSOMAL PROTEIN S8 300852  
20 4Z8C 39 1h, 2h 30S ribosomal protein S8 300852  
21 2UUB 8 H 30S RIBOSOMAL PROTEIN S8 300852  
22 4DV6 8 H ribosomal protein S8 300852  
23 4JYA 8 H 30S ribosomal protein S8 300852  
24 4DR5 8 H 30S ribosomal protein S8 300852  
25 4KHP 8 H 30S Ribosomal protein S8 300852  
26 4DR2 8 H 30S ribosomal protein S8 300852  
27 4LF9 8 H ribosomal protein S8 300852  
28 4WQY 41 BH, DH 30S ribosomal protein S8 300852  
29 4DUY 8 H ribosomal protein S8 300852  
30 4DV7 8 H ribosomal protein S8 300852  
31 4V9H 21 AH 30S ribosomal protein S8 300852  
32 4V8D 8 AK, CK 30S RIBOSOMAL PROTEIN S8 300852  
33 4DR3 8 H 30S ribosomal protein S8 300852  
34 4V90 8 AH 30S RIBOSOMAL PROTEIN S8 300852  
35 4JI3 8 H RIBOSOMAL PROTEIN S8 300852  
36 4JI6 8 H RIBOSOMAL PROTEIN S8 300852  
37 4JI8 8 H RIBOSOMAL PROTEIN S8 300852  
38 2UXC 8 H RIBOSOMAL PROTEIN S8 300852  
39 4V9R 8 AH, CH 30S Ribosomal Protein S8 274  
40 4B3M 8 H 30S RIBOSOMAL PROTEIN S8 300852  
41 4LF4 8 H ribosomal protein S8 300852  
42 4LF6 8 H ribosomal protein S8 300852  
43 4JI7 8 H RIBOSOMAL PROTEIN S8 300852  
44 4B3T 8 H 30S RIBOSOMAL PROTEIN S8 300852  
45 4V8B 8 AK, CK 30S RIBOSOMAL PROTEIN S8 300852  
46 2VQF 8 H 30S RIBOSOMAL PROTEIN S8 300852  
47 2UUA 8 H 30S RIBOSOMAL PROTEIN S8 300852  
48 4V87 38 BK, CK 30S RIBOSOMAL PROTEIN S8 300852  
49 4V95 8 AH, CH 30S Ribosomal Protein S8 274  
50 1VY7 8 AH, CH 30S ribosomal protein S8 300852  
51 4B3R 8 H 30S RIBOSOMAL PROTEIN S8 300852  
52 4LNT 8 QH, XH 30S ribosomal protein S8 300852  
53 4DR1 8 H 30S ribosomal protein S8 300852  
54 4LFA 8 H ribosomal protein S8 300852  
55 4DV4 8 H ribosomal protein S8 300852  
56 4JI0 8 H ribosomal protein S8 300852  
57 4V9S 8 AH, CH 30S Ribosomal Protein S8 274  
58 4JI2 8 H RIBOSOMAL PROTEIN S8 300852  
59 4JV5 8 H 30S ribosomal protein S8 300852  
60 4DR7 8 H 30S ribosomal protein S8 300852  
61 1J5E 8 H 30S RIBOSOMAL PROTEIN S8 274  
62 4GKK 8 H 30S ribosomal protein S8 300852  
63 4DUZ 8 H ribosomal protein S8 300852  
64 4V8G 8 AH, CH 30S Ribosomal Protein S8 300852  
65 4GKJ 8 H 30S ribosomal protein S8 300852  
66 4DV3 8 H ribosomal protein S8 300852  
67 4DV5 8 H ribosomal protein S8 300852  
68 2UUC 8 H 30S RIBOSOMAL PROTEIN S8 300852  
69 4LFC 8 H ribosomal protein S8 300852  
70 1FJG 9 H 30S RIBOSOMAL PROTEIN S8 274  
71 3T1Y 8 H 30S ribosomal protein S8 300852  
72 4JI4 8 H RIBOSOMAL PROTEIN S8 300852  
73 1VY6 8 AH, CH 30S ribosomal protein S8 300852  
74 1XMQ 10 H 30S Ribosomal Protein S8 274  
75 4DV0 8 H ribosomal protein S8 300852  
76 4V9B 8 AK, CK 30S RIBOSOMAL PROTEIN S8 300852  
77 4V6F 38 BK, CK 30S ribosomal protein S8 300852  
78 4V8F 38 BK, CK 30S RIBOSOMAL PROTEIN S8 300852  
79 4B3S 8 H 30S RIBOSOMAL PROTEIN S8 300852  
80 4DV2 8 H ribosomal protein S8 300852  
81 4DV1 8 H ribosomal protein S8 300852  
82 1N32 10 H 30S RIBOSOMAL PROTEIN S8 274  
83 1I94 8 H 30S RIBOSOMAL PROTEIN S8 274  
84 4V8H 8 AH, CH 30S Ribosomal Protein S8 300852  
85 4JI5 8 H RIBOSOMAL PROTEIN S8 300852  
86 4K0K 8 H 30S ribosomal protein S8 300852  
87 4W2E 41 h 30S ribosomal protein S8 300852  
88 4V8C 38 CK, DK 30S RIBOSOMAL PROTEIN S8 300852  
89 4LF5 8 H ribosomal protein S8 300852  
90 4V9A 8 AK, CK 30S RIBOSOMAL PROTEIN S8 300852  
91 4V5J 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
92 4V7Y 8 AH, CH 30S ribosomal protein S8 300852  
93 4V8E 38 BK, DK 30S RIBOSOMAL PROTEIN S8 300852  
94 4DR4 8 H 30S ribosomal protein S8 300852  
95 3OTO 8 H 30S RIBOSOMAL PROTEIN S8 300852  
96 2UU9 8 H 30S RIBOSOMAL PROTEIN S8 300852  
97 4V8Q 42 BH 30S RIBOSOMAL PROTEIN S8 300852  
98 1HR0 9 H 30S RIBOSOMAL PROTEIN S8 274  
99 4AQY 8 H 30S RIBOSOMAL PROTEIN S8 274  
100 4NXM 8 H ribosomal protein S8 300852  
101 4V5L 8 AH 30S RIBOSOMAL PROTEIN S8 300852  
102 4V7X 8 AH, CH 30S ribosomal protein S8 300852  
103 4ZER 39 1h, 2h 30S ribosomal protein S8 300852  
104 1IBL 11 H 30S RIBOSOMAL PROTEIN S8 274  
105 4V7W 8 AH, CH 30S ribosomal protein S8 300852  
106 4WUS 9 H 30S ribosomal protein S8 300852  
107 4WT8 8 H 30S ribosomal protein S8 300852  
108 4NXN 8 H ribosomal protein S8 300852  
109 1XNR 10 H 16S Ribosomal protein S8 274  
110 4LT8 8 QH, XH 30S ribosomal protein S8 300852  
111 4V51 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
112 4V7L 8 AH, CH 30S ribosomal protein S8 300852  
113 4V5R 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
114 1HNZ 9 H 30S RIBOSOMAL PROTEIN S8 274  
115 1XNQ 10 H Ribosomal protein S8 274  
116 4V8A 38 CH, DH 30S ribosomal protein S8 300852  
117 4V5K 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
118 4V5Q 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
119 4V7J 7 Ah, Bh 30S ribosomal protein S8 300852  
120 4V5C 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
121 4V5E 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
122 4L47 8 QH, XH 30S ribosomal protein S8 300852  
123 4V5P 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
124 4V5D 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
125 4V7Z 8 AH, CH 30S ribosomal protein S8 300852  
126 4V8X 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
127 4V5S 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
128 4V9I 8 AH, CH 30S Ribosomal protein S8 300852  
129 1XMO 10 H 30S ribosomal protein S8 274  
130 3T1H 8 H 30S ribosomal protein S8 300852  
131 2UXD 8 H RIBOSOMAL PROTEIN S8 300852  
132 1N33 10 H 30S RIBOSOMAL PROTEIN S8 274  
133 1IBK 9 H 30S RIBOSOMAL PROTEIN S8 274  
134 4V6G 8 AK, CK 30S RIBOSOMAL PROTEIN S8 300852  
135 4V8N 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
136 4V97 8 AH, CH 30S ribosomal protein S8 300852  
137 1HNW 9 H 30S RIBOSOMAL PROTEIN S8 274  
138 4V7M 8 AH, CH 30S ribosomal protein S8 300852  
139 4TUD 8 QH, XH 30S ribosomal protein S8 300852  
140 1IBM 11 H 30S RIBOSOMAL PROTEIN S8 274  
141 4V6A 8 AH, CH 30S ribosomal protein S8 300852  
142 4TUE 8 QH, XH 30S ribosomal protein S8 300852  
143 4TUA 8 QH, XH 30S ribosomal protein S8 300852  
144 4V84 8 AH, CH 30S ribosomal protein S8 262724  
145 4V7K 7 Ah, Bh 30S ribosomal protein S8 300852  
146 1HNX 9 H 30S RIBOSOMAL PROTEIN S8 274  
147 4V9Q 38 BH, DH 30S ribosomal protein S8 262724  
148 4TUC 8 QH, XH 30S ribosomal protein S8 300852  
149 4YHH 8 H 30S ribosomal protein S8 262724  
150 4TUB 8 QH, XH 30S ribosomal protein S8 300852  
151 4V9N 11 AH, CH 30S ribosomal protein S8 262724  
152 4P70 8 QH, XH 30S ribosomal protein S8 300852  
153 4V8U 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
154 4LSK 8 QH, XH 30S ribosomal protein S8 300852  
155 4P6F 8 QH, XH 30S ribosomal protein S8 300852  
156 4V67 10 AH, CH 30S ribosomal protein S8 274  
157 4V83 8 AH, CH 30S ribosomal protein S8 262724  
158 4V5F 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
159 1VVJ 8 QH, XH 30S ribosomal protein S8 300852  
160 4LFZ 8 QH, XH 30S ribosomal protein S8 300852  
161 2E5L 9 H 30S ribosomal protein S8 274  
162 2HHH 8 H 30S ribosomal protein S8 300852  
163 4OX9 8 H 30S ribosomal protein S8 300852  
164 2UXB 8 H RIBOSOMAL PROTEIN S8 300852  
165 1I96 8 H 30S RIBOSOMAL PROTEIN S8 274  
166 4V9K 7 AH, CH 30S ribosomal protein S8 262724  
167 1N34 9 H 30S RIBOSOMAL PROTEIN S8 274  
168 4V5A 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
169 4V63 10 AH, CH 30S ribosomal protein S8 262724  
170 4L71 8 QH, XH 30S ribosomal protein S8 300852  
171 4KVB 8 H 30S ribosomal protein S8 262724  
172 4XEJ 35 AS08, BS08 30S ribosomal protein S8 262724  
173 4V7P 8 AH, DH 30S ribosomal protein S8 262724  
174 4V8J 8 AH, CH 30S ribosomal protein S8 300852  
175 1N36 8 H 30S RIBOSOMAL PROTEIN S8 274  
176 2ZM6 8 H 30S ribosomal protein S8 274  
177 4LEL 8 QH, XH 30S ribosomal protein S8 300852  
178 2F4V 9 H 30S ribosomal protein S8 274  
179 4V9L 7 AH, CH 30S ribosomal protein S8 262724  
180 1FKA 8 H 30S RIBOSOMAL PROTEIN S8 274  
181 4V5G 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
182 1I97 8 H 30S RIBOSOMAL PROTEIN S8 274  
183 4V9J 7 AH, CH 30S ribosomal protein S8 262724  
184 1I95 8 H 30S RIBOSOMAL PROTEIN S8 274  
185 4V8O 8 AH 30S RIBOSOMAL PROTEIN S8 300852  
186 4V9M 7 AH, CH 30S ribosomal protein S8 262724  
187 4W29 7 AH, CH 30S ribosomal protein S8 262724  
188 4V4Y 10 AK 30S ribosomal protein S8 300852  
189 4V4J 41 i 30S ribosomal protein S8 262724  
190 4V4X 10 AK 30S ribosomal protein S8 300852  
191 4V4Z 11 AK 30S ribosomal protein S8 300852  
192 4V4I 41 i 30S ribosomal protein S8 262724  
193 4V4P 43 BK 30S ribosomal protein S8 300852  
194 4V4R 11 AH 30S ribosomal protein S8 300852  
195 4V4S 11 AH 30S ribosomal protein S8 300852  
196 4V4T 11 AH 30S ribosomal protein S8 300852  
197 4V49 10 AH 30S ribosomal protein S8 562  
198 4V4A 8 AH 30S ribosomal protein S8 562  
199 4V4G 8 AH, CH, EH, GH, IH 30S ribosomal protein S8 562  
200 4V5N 8 AH 30S RIBOSOMAL PROTEIN S8 300852  
201 4V5M 8 AH 30S RIBOSOMAL PROTEIN S8 300852  
202 4V68 6 AH 30S ribosomal protein S8 274  
203 1ML5 13 K 30S RIBOSOMAL PROTEIN S8 562  
204 1JGO 11 K 30S RIBOSOMAL PROTEIN S8 274  
205 1JGP 11 K 30S RIBOSOMAL PROTEIN S8 274  
206 1JGQ 11 K 30S RIBOSOMAL PROTEIN S8 274  
207 4V42 11 AK 30S RIBOSOMAL PROTEIN S8 274  
208 1EMI 2 A RIBOSOMAL PROTEIN S8 274  
209 1EG0 9 E PROTEIN (S8 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1AN7 562  
210 1QD7 7 G S8 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 25
95% 36 205 45
90% 36 205 47
70% 36 205 57
50% 47 290 35
40% 47 290 45
30% 52 342 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 23
95% 36 206 41
90% 36 206 43
70% 36 206 52
50% 41 284 41
40% 48 343 34
30% 48 344 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18091
95% 36 213 31
90% 36 213 34
70% 41 295 24
50% 41 296 34
40% 41 296 44
30% 41 296 67
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 207 20
95% 36 207 39
90% 36 207 41
70% 36 207 50
50% 41 289 39
40% 41 289 49
30% 46 343 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 205 24
95% 36 205 46
90% 36 205 48
70% 36 206 55
50% 36 206 85
40% 36 206 110
30% 36 206 129
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 209 18
95% 38 214 29
90% 38 214 32
70% 38 214 42
50% 46 297 33
40% 46 298 43
30% 46 298 65
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 201 29
95% 36 206 43
90% 36 206 45
70% 36 206 54
50% 36 206 84
40% 36 207 109
30% 41 287 74
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 120 62
95% 36 200 47
90% 36 204 49
70% 36 204 58
50% 36 204 87
40% 36 204 112
30% 36 204 131
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 131 56
95% 33 180 55
90% 33 180 57
70% 33 180 72
50% 33 180 119
40% 33 180 143
30% 33 180 159
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 209 17
95% 37 209 33
90% 37 209 37
70% 37 209 46
50% 42 287 38
40% 42 287 48
30% 42 287 71
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 21
95% 36 207 35
90% 36 207 38
70% 36 207 47
50% 41 283 43
40% 41 284 51
30% 41 284 73
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 156 52
95% 36 205 44
90% 36 205 46
70% 36 205 56
50% 36 205 86
40% 36 205 111
30% 36 205 130
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 196 32
95% 36 196 51
90% 36 196 53
70% 36 196 64
50% 36 196 97
40% 36 196 120
30% 36 196 143
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 179 36
95% 33 179 56
90% 33 179 59
70% 33 179 73
50% 34 220 77
40% 34 220 100
30% 34 220 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 30
95% 36 207 37
90% 36 207 40
70% 36 207 49
50% 41 284 40
40% 41 285 50
30% 41 285 72
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 22
95% 36 206 40
90% 36 206 42
70% 36 206 51
50% 42 288 37
40% 42 288 47
30% 42 290 69
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 211 15
95% 43 217 28
90% 43 217 31
70% 43 217 41
50% 43 217 78
40% 43 217 102
30% 49 256 85
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 210 16
95% 37 211 32
90% 37 211 35
70% 37 211 44
50% 42 254 51
40% 42 255 67
30% 42 255 88
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 206 19
95% 37 206 38
90% 37 210 36
70% 37 210 45
50% 44 290 36
40% 45 292 46
30% 51 347 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 116 81
95% 36 206 42
90% 36 206 44
70% 36 206 53
50% 41 284 42
40% 41 284 52
30% 46 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.