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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 35 Members. Sequence cutoff: 90% Cluster size: 199 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1AN7 1 A, B RIBOSOMAL PROTEIN S8 274  
2 4W2F 8 AH, CH 30S Ribosomal Protein S8 300852  
3 4W2G 8 AH, CH 30S Ribosomal Protein S8 300852  
4 4LFB 8 H ribosomal protein S8 300852  
5 1VY4 8 AH, CH 30S ribosomal protein S8 300852  
6 4W2I 8 AH, CH 30S Ribosomal Protein S8 300852  
7 1VY5 8 AH, CH 30S ribosomal protein S8 300852  
8 4WQF 41 BH, DH 30S ribosomal protein S8 300852  
9 4W2H 8 AH, CH 30S Ribosomal Protein S8 300852  
10 4WPO 41 BH, DH 30S ribosomal protein S8 300852  
11 4V8I 8 AH, CH 30S Ribosomal Protein S8 274  
12 4JI1 8 H RIBOSOMAL PROTEIN S8 300852  
13 4DR6 8 H 30S ribosomal protein S8 300852  
14 4LF7 8 H ribosomal protein S8 300852  
15 4LF8 8 H ribosomal protein S8 300852  
16 4WQU 41 BH, DH 30S ribosomal protein S8 300852  
17 2VQE 8 H 30S RIBOSOMAL PROTEIN S8 300852  
18 2UUB 8 H 30S RIBOSOMAL PROTEIN S8 300852  
19 4DV6 8 H ribosomal protein S8 300852  
20 4JYA 8 H 30S ribosomal protein S8 300852  
21 4DR5 8 H 30S ribosomal protein S8 300852  
22 4KHP 8 H 30S Ribosomal protein S8 300852  
23 4DR2 8 H 30S ribosomal protein S8 300852  
24 4LF9 8 H ribosomal protein S8 300852  
25 4WQY 41 BH, DH 30S ribosomal protein S8 300852  
26 4DUY 8 H ribosomal protein S8 300852  
27 4DV7 8 H ribosomal protein S8 300852  
28 4V9H 21 AH 30S ribosomal protein S8 300852  
29 4V8D 8 AK, CK 30S RIBOSOMAL PROTEIN S8 300852  
30 4DR3 8 H 30S ribosomal protein S8 300852  
31 4V90 8 AH 30S RIBOSOMAL PROTEIN S8 300852  
32 4JI3 8 H RIBOSOMAL PROTEIN S8 300852  
33 4JI6 8 H RIBOSOMAL PROTEIN S8 300852  
34 4JI8 8 H RIBOSOMAL PROTEIN S8 300852  
35 2UXC 8 H RIBOSOMAL PROTEIN S8 300852  
36 4V9R 8 AH, CH 30S Ribosomal Protein S8 274  
37 4B3M 8 H 30S RIBOSOMAL PROTEIN S8 300852  
38 4LF4 8 H ribosomal protein S8 300852  
39 4LF6 8 H ribosomal protein S8 300852  
40 4JI7 8 H RIBOSOMAL PROTEIN S8 300852  
41 4B3T 8 H 30S RIBOSOMAL PROTEIN S8 300852  
42 4V8B 8 AK, CK 30S RIBOSOMAL PROTEIN S8 300852  
43 2VQF 8 H 30S RIBOSOMAL PROTEIN S8 300852  
44 2UUA 8 H 30S RIBOSOMAL PROTEIN S8 300852  
45 4V87 38 BK, CK 30S RIBOSOMAL PROTEIN S8 300852  
46 4V95 8 AH, CH 30S Ribosomal Protein S8 274  
47 1VY7 8 AH, CH 30S ribosomal protein S8 300852  
48 4B3R 8 H 30S RIBOSOMAL PROTEIN S8 300852  
49 4LNT 8 QH, XH 30S ribosomal protein S8 300852  
50 4DR1 8 H 30S ribosomal protein S8 300852  
51 4LFA 8 H ribosomal protein S8 300852  
52 4DV4 8 H ribosomal protein S8 300852  
53 4JI0 8 H ribosomal protein S8 300852  
54 4V9S 8 AH, CH 30S Ribosomal Protein S8 274  
55 4JI2 8 H RIBOSOMAL PROTEIN S8 300852  
56 4JV5 8 H 30S ribosomal protein S8 300852  
57 4DR7 8 H 30S ribosomal protein S8 300852  
58 1J5E 8 H 30S RIBOSOMAL PROTEIN S8 274  
59 4GKK 8 H 30S ribosomal protein S8 300852  
60 4DUZ 8 H ribosomal protein S8 300852  
61 4V8G 8 AH, CH 30S Ribosomal Protein S8 300852  
62 4GKJ 8 H 30S ribosomal protein S8 300852  
63 4DV3 8 H ribosomal protein S8 300852  
64 4DV5 8 H ribosomal protein S8 300852  
65 2UUC 8 H 30S RIBOSOMAL PROTEIN S8 300852  
66 4LFC 8 H ribosomal protein S8 300852  
67 1FJG 9 H 30S RIBOSOMAL PROTEIN S8 274  
68 3T1Y 8 H 30S ribosomal protein S8 300852  
69 4JI4 8 H RIBOSOMAL PROTEIN S8 300852  
70 1VY6 8 AH, CH 30S ribosomal protein S8 300852  
71 1XMQ 10 H 30S Ribosomal Protein S8 274  
72 4DV0 8 H ribosomal protein S8 300852  
73 4V9B 8 AK, CK 30S RIBOSOMAL PROTEIN S8 300852  
74 4V6F 38 BK, CK 30S ribosomal protein S8 300852  
75 4V8F 38 BK, CK 30S RIBOSOMAL PROTEIN S8 300852  
76 4B3S 8 H 30S RIBOSOMAL PROTEIN S8 300852  
77 4DV2 8 H ribosomal protein S8 300852  
78 4DV1 8 H ribosomal protein S8 300852  
79 1N32 10 H 30S RIBOSOMAL PROTEIN S8 274  
80 1I94 8 H 30S RIBOSOMAL PROTEIN S8 274  
81 4V8H 8 AH, CH 30S Ribosomal Protein S8 300852  
82 4JI5 8 H RIBOSOMAL PROTEIN S8 300852  
83 4K0K 8 H 30S ribosomal protein S8 300852  
84 4W2E 41 h 30S ribosomal protein S8 300852  
85 4V8C 38 CK, DK 30S RIBOSOMAL PROTEIN S8 300852  
86 4LF5 8 H ribosomal protein S8 300852  
87 4V9A 8 AK, CK 30S RIBOSOMAL PROTEIN S8 300852  
88 4V5J 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
89 4V7Y 8 AH, CH 30S ribosomal protein S8 300852  
90 4V8E 38 BK, DK 30S RIBOSOMAL PROTEIN S8 300852  
91 4DR4 8 H 30S ribosomal protein S8 300852  
92 3OTO 8 H 30S RIBOSOMAL PROTEIN S8 300852  
93 2UU9 8 H 30S RIBOSOMAL PROTEIN S8 300852  
94 4V8Q 42 BH 30S RIBOSOMAL PROTEIN S8 300852  
95 1HR0 9 H 30S RIBOSOMAL PROTEIN S8 274  
96 4AQY 8 H 30S RIBOSOMAL PROTEIN S8 274  
97 4NXM 8 H ribosomal protein S8 300852  
98 4V5L 8 AH 30S RIBOSOMAL PROTEIN S8 300852  
99 4V7X 8 AH, CH 30S ribosomal protein S8 300852  
100 1IBL 11 H 30S RIBOSOMAL PROTEIN S8 274  
101 4V7W 8 AH, CH 30S ribosomal protein S8 300852  
102 4WUS 9 H 30S ribosomal protein S8 300852  
103 4WT8 8 H 30S ribosomal protein S8 300852  
104 4NXN 8 H ribosomal protein S8 300852  
105 1XNR 10 H 16S Ribosomal protein S8 274  
106 4LT8 8 QH, XH 30S ribosomal protein S8 300852  
107 4V51 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
108 4V7L 8 AH, CH 30S ribosomal protein S8 300852  
109 4V5R 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
110 1HNZ 9 H 30S RIBOSOMAL PROTEIN S8 274  
111 1XNQ 10 H Ribosomal protein S8 274  
112 4V8A 38 CH, DH 30S ribosomal protein S8 300852  
113 4V5K 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
114 4V5Q 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
115 4V7J 7 Ah, Bh 30S ribosomal protein S8 300852  
116 4V5C 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
117 4V5E 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
118 4L47 8 QH, XH 30S ribosomal protein S8 300852  
119 4V5P 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
120 4V5D 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
121 4V7Z 8 AH, CH 30S ribosomal protein S8 300852  
122 4V8X 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
123 4V5S 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
124 4V9I 8 AH, CH 30S Ribosomal protein S8 300852  
125 1XMO 10 H 30S ribosomal protein S8 274  
126 3T1H 8 H 30S ribosomal protein S8 300852  
127 2UXD 8 H RIBOSOMAL PROTEIN S8 300852  
128 1N33 10 H 30S RIBOSOMAL PROTEIN S8 274  
129 1IBK 9 H 30S RIBOSOMAL PROTEIN S8 274  
130 4V6G 8 AK, CK 30S RIBOSOMAL PROTEIN S8 300852  
131 4V8N 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
132 4V97 8 AH, CH 30S ribosomal protein S8 300852  
133 1HNW 9 H 30S RIBOSOMAL PROTEIN S8 274  
134 4V7M 8 AH, CH 30S ribosomal protein S8 300852  
135 1IBM 11 H 30S RIBOSOMAL PROTEIN S8 274  
136 4V6A 8 AH, CH 30S ribosomal protein S8 300852  
137 4V84 8 AH, CH 30S ribosomal protein S8 262724  
138 4V7K 7 Ah, Bh 30S ribosomal protein S8 300852  
139 1HNX 9 H 30S RIBOSOMAL PROTEIN S8 274  
140 4V9Q 38 BH, DH 30S ribosomal protein S8 262724  
141 4V9N 11 AH, CH 30S ribosomal protein S8 262724  
142 4P70 8 QH, XH 30S ribosomal protein S8 300852  
143 4V8U 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
144 4LSK 8 QH, XH 30S ribosomal protein S8 300852  
145 4P6F 8 QH, XH 30S ribosomal protein S8 300852  
146 4V67 10 AH, CH 30S ribosomal protein S8 274  
147 4V83 8 AH, CH 30S ribosomal protein S8 262724  
148 4V5F 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
149 1VVJ 8 QH, XH 30S ribosomal protein S8 300852  
150 4LFZ 8 QH, XH 30S ribosomal protein S8 300852  
151 2E5L 9 H 30S ribosomal protein S8 274  
152 2HHH 8 H 30S ribosomal protein S8 300852  
153 4OX9 8 H 30S ribosomal protein S8 300852  
154 2UXB 8 H RIBOSOMAL PROTEIN S8 300852  
155 1I96 8 H 30S RIBOSOMAL PROTEIN S8 274  
156 4V9K 7 AH, CH 30S ribosomal protein S8 262724  
157 1N34 9 H 30S RIBOSOMAL PROTEIN S8 274  
158 4V5A 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
159 4V63 10 AH, CH 30S ribosomal protein S8 262724  
160 4L71 8 QH, XH 30S ribosomal protein S8 300852  
161 4KVB 8 H 30S ribosomal protein S8 262724  
162 4V7P 8 AH, DH 30S ribosomal protein S8 262724  
163 4V8J 8 AH, CH 30S ribosomal protein S8 300852  
164 1N36 8 H 30S RIBOSOMAL PROTEIN S8 274  
165 2ZM6 8 H 30S ribosomal protein S8 274  
166 4LEL 8 QH, XH 30S ribosomal protein S8 300852  
167 2F4V 9 H 30S ribosomal protein S8 274  
168 4V9L 7 AH, CH 30S ribosomal protein S8 262724  
169 1FKA 8 H 30S RIBOSOMAL PROTEIN S8 274  
170 4V5G 8 AH, CH 30S RIBOSOMAL PROTEIN S8 300852  
171 1I97 8 H 30S RIBOSOMAL PROTEIN S8 274  
172 4V9J 7 AH, CH 30S ribosomal protein S8 262724  
173 1I95 8 H 30S RIBOSOMAL PROTEIN S8 274  
174 4V8O 8 AH 30S RIBOSOMAL PROTEIN S8 300852  
175 4V9M 7 AH, CH 30S ribosomal protein S8 262724  
176 4W29 7 AH, CH 30S ribosomal protein S8 262724  
177 4V4Y 10 AK 30S ribosomal protein S8 300852  
178 4V4J 41 i 30S ribosomal protein S8 262724  
179 4V4X 10 AK 30S ribosomal protein S8 300852  
180 4V4Z 11 AK 30S ribosomal protein S8 300852  
181 4V4I 41 i 30S ribosomal protein S8 262724  
182 4V4P 43 BK 30S ribosomal protein S8 300852  
183 4V4R 11 AH 30S ribosomal protein S8 300852  
184 4V4S 11 AH 30S ribosomal protein S8 300852  
185 4V4T 11 AH 30S ribosomal protein S8 300852  
186 4V49 10 AH 30S ribosomal protein S8 562  
187 4V4A 8 AH 30S ribosomal protein S8 562  
188 4V4G 8 AH, CH, EH, GH, IH 30S ribosomal protein S8 562  
189 4V5N 8 AH 30S RIBOSOMAL PROTEIN S8 300852  
190 4V5M 8 AH 30S RIBOSOMAL PROTEIN S8 300852  
191 4V68 6 AH 30S ribosomal protein S8 274  
192 1ML5 13 K 30S RIBOSOMAL PROTEIN S8 562  
193 1JGO 11 K 30S RIBOSOMAL PROTEIN S8 274  
194 1JGP 11 K 30S RIBOSOMAL PROTEIN S8 274  
195 1JGQ 11 K 30S RIBOSOMAL PROTEIN S8 274  
196 4V42 11 AK 30S RIBOSOMAL PROTEIN S8 274  
197 1EMI 2 A RIBOSOMAL PROTEIN S8 274  
198 1EG0 9 E PROTEIN (S8 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1AN7 562  
199 1QD7 7 G S8 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 193 28
95% 33 194 45
90% 33 194 47
70% 33 194 58
50% 43 275 34
40% 43 275 45
30% 43 280 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 26
95% 33 195 41
90% 33 195 43
70% 33 195 54
50% 37 269 41
40% 44 322 35
30% 44 322 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17605
95% 33 202 32
90% 33 202 33
70% 37 281 23
50% 37 281 33
40% 37 281 44
30% 37 281 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 23
95% 33 196 39
90% 33 196 41
70% 33 196 52
50% 37 274 38
40% 37 274 50
30% 42 323 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 27
95% 33 194 46
90% 33 194 48
70% 33 194 59
50% 33 194 92
40% 33 194 115
30% 33 194 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 198 21
95% 35 203 30
90% 35 203 31
70% 35 203 43
50% 42 282 32
40% 42 282 42
30% 42 282 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 190 29
95% 33 195 43
90% 33 195 45
70% 33 195 56
50% 33 195 89
40% 33 195 113
30% 37 272 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 54
95% 33 189 48
90% 33 193 50
70% 33 193 61
50% 33 193 95
40% 33 193 120
30% 33 193 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 47
95% 30 172 58
90% 30 172 62
70% 30 172 76
50% 30 172 111
40% 30 172 137
30% 30 172 156
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 36
95% 31 174 57
90% 31 174 61
70% 31 174 75
50% 38 272 37
40% 38 272 49
30% 38 272 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 24
95% 33 196 36
90% 33 196 39
70% 33 196 50
50% 33 196 87
40% 37 269 52
30% 37 269 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 42
95% 33 194 44
90% 33 194 46
70% 33 194 57
50% 33 194 91
40% 33 194 114
30% 33 194 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 185 32
95% 33 185 51
90% 33 185 54
70% 33 185 65
50% 33 185 101
40% 33 185 127
30% 33 185 147
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 37
95% 30 171 59
90% 30 171 63
70% 30 171 77
50% 31 210 73
40% 31 210 97
30% 31 210 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 188 30
95% 33 196 37
90% 33 196 40
70% 33 196 51
50% 37 269 39
40% 37 270 51
30% 37 270 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 25
95% 33 195 40
90% 33 195 42
70% 33 195 53
50% 38 273 36
40% 38 273 48
30% 38 275 70
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 17
95% 40 206 29
90% 40 206 30
70% 40 206 40
50% 40 206 80
40% 40 206 105
30% 45 243 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 199 20
95% 34 200 33
90% 34 200 34
70% 34 200 47
50% 38 241 54
40% 38 242 70
30% 38 242 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 195 22
95% 34 195 38
90% 34 199 35
70% 34 199 48
50% 40 275 35
40% 41 277 46
30% 47 327 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 73
95% 33 195 42
90% 33 195 44
70% 33 195 55
50% 37 269 40
40% 37 269 53
30% 42 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.