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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 49 Members. Sequence cutoff: 70% Cluster size: 194 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1RSS 1 A RIBOSOMAL PROTEIN S7 274  
2 4W2F 7 AG, CG 30S Ribosomal Protein S7 300852  
3 4W2G 7 AG, CG 30S Ribosomal Protein S7 300852  
4 4LFB 7 G ribosomal protein S7 300852  
5 1VY4 7 AG, CG 30S ribosomal protein S7 300852  
6 4W2I 7 AG, CG 30S Ribosomal Protein S7 300852  
7 1VY5 7 AG, CG 30S ribosomal protein S7 300852  
8 4W2H 7 AG, CG 30S Ribosomal Protein S7 300852  
9 4V8I 7 AG, CG 30S Ribosomal Protein S7 274  
10 4JI1 7 G RIBOSOMAL PROTEIN S7 300852  
11 4DR6 7 G 30S ribosomal protein S7 300852  
12 4LF7 7 G ribosomal protein S7 300852  
13 4LF8 7 G ribosomal protein S7 300852  
14 2VQE 7 G 30S RIBOSOMAL PROTEIN S7 300852  
15 2UUB 7 G 30S RIBOSOMAL PROTEIN S7 300852  
16 4DV6 7 G ribosomal protein S7 300852  
17 4JYA 7 G 30S ribosomal protein S7 300852  
18 4DR5 7 G 30S ribosomal protein S7 300852  
19 4KHP 7 G 30S Ribosomal protein S7 300852  
20 4DR2 7 G 30S ribosomal protein S7 300852  
21 4LF9 7 G ribosomal protein S7 300852  
22 4DUY 7 G ribosomal protein S7 300852  
23 4DV7 7 G ribosomal protein S7 300852  
24 4V9H 20 AG 30S ribosomal protein S7 300852  
25 4V8D 7 AJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
26 4DR3 7 G 30S ribosomal protein S7 300852  
27 4V90 7 AG 30S RIBOSOMAL PROTEIN S7 300852  
28 4JI3 7 G RIBOSOMAL PROTEIN S7 300852  
29 4JI6 7 G RIBOSOMAL PROTEIN S7 300852  
30 4JI8 7 G RIBOSOMAL PROTEIN S7 300852  
31 2UXC 7 G RIBOSOMAL PROTEIN S7 300852  
32 4V9R 7 AG, CG 30S Ribosomal Protein S7 274  
33 4B3M 7 G 30S RIBOSOMAL PROTEIN S7 300852  
34 4LF4 7 G ribosomal protein S7 300852  
35 4LF6 7 G ribosomal protein S7 300852  
36 4JI7 7 G RIBOSOMAL PROTEIN S7 300852  
37 4B3T 7 G 30S RIBOSOMAL PROTEIN S7 300852  
38 4V8B 7 AJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
39 2VQF 7 G 30S RIBOSOMAL PROTEIN S7 300852  
40 2UUA 7 G 30S RIBOSOMAL PROTEIN S7 300852  
41 4V87 37 BJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
42 4V95 7 AG, CG 30S Ribosomal Protein S7 274  
43 1VY7 7 AG, CG 30S ribosomal protein S7 300852  
44 4B3R 7 G 30S RIBOSOMAL PROTEIN S7 300852  
45 4LNT 7 QG, XG 30S ribosomal protein S7 300852  
46 4DR1 7 G 30S ribosomal protein S7 300852  
47 4LFA 7 G ribosomal protein S7 300852  
48 4DV4 7 G ribosomal protein S7 300852  
49 4JI0 7 G ribosomal protein S7 300852  
50 4V9S 7 AG, CG 30S Ribosomal Protein S7 274  
51 4JI2 7 G RIBOSOMAL PROTEIN S7 300852  
52 4JV5 7 G 30S ribosomal protein S7 300852  
53 4DR7 7 G 30S ribosomal protein S7 300852  
54 1J5E 7 G 30S RIBOSOMAL PROTEIN S7 274  
55 4GKK 7 G 30S ribosomal protein S7 300852  
56 4DUZ 7 G ribosomal protein S7 300852  
57 4V8G 7 AG, CG 30S Ribosomal Protein S7 300852  
58 4GKJ 7 G 30S ribosomal protein S7 300852  
59 4DV3 7 G ribosomal protein S7 300852  
60 4DV5 7 G ribosomal protein S7 300852  
61 2UUC 7 G 30S RIBOSOMAL PROTEIN S7 300852  
62 4LFC 7 G ribosomal protein S7 300852  
63 1FJG 8 G 30S RIBOSOMAL PROTEIN S7 274  
64 3T1Y 7 G 30S ribosomal protein S7 300852  
65 4JI4 7 G RIBOSOMAL PROTEIN S7 300852  
66 1VY6 7 AG, CG 30S ribosomal protein S7 300852  
67 1XMQ 9 G 30S Ribosomal Protein S7 274  
68 4DV0 7 G ribosomal protein S7 300852  
69 4V9B 7 AJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
70 4V6F 37 BJ, CJ 30S ribosomal protein S7 300852  
71 4V8F 37 BJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
72 4B3S 7 G 30S RIBOSOMAL PROTEIN S7 300852  
73 4DV2 7 G ribosomal protein S7 300852  
74 4DV1 7 G ribosomal protein S7 300852  
75 1N32 9 G 30S RIBOSOMAL PROTEIN S7 274  
76 1I94 7 G 30S RIBOSOMAL PROTEIN S7 274  
77 4V8H 7 AG, CG 30S Ribosomal Protein S7 300852  
78 4JI5 7 G RIBOSOMAL PROTEIN S7 300852  
79 4K0K 7 G 30S ribosomal protein S7 300852  
80 4W2E 40 g 30S ribosomal protein S7 300852  
81 4V8C 37 CJ, DJ 30S RIBOSOMAL PROTEIN S7 300852  
82 4LF5 7 G ribosomal protein S7 300852  
83 4V9A 7 AJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
84 4V5J 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
85 4V7Y 7 AG, CG 30S ribosomal protein S7 300852  
86 4V8E 37 BJ, DJ 30S RIBOSOMAL PROTEIN S7 300852  
87 4DR4 7 G 30S ribosomal protein S7 300852  
88 3OTO 7 G 30S RIBOSOMAL PROTEIN S7 300852  
89 2UU9 7 G 30S RIBOSOMAL PROTEIN S7 300852  
90 4V8Q 41 BG 30S RIBOSOMAL PROTEIN S7 300852  
91 1HR0 8 G 30S RIBOSOMAL PROTEIN S7 274  
92 4AQY 7 G 30S RIBOSOMAL PROTEIN S7 274  
93 4NXM 7 G ribosomal protein S7 300852  
94 4V5L 7 AG 30S RIBOSOMAL PROTEIN S7 300852  
95 4V7X 7 AG, CG 30S ribosomal protein S7 300852  
96 1IBL 10 G 30S RIBOSOMAL PROTEIN S7 274  
97 4V7W 7 AG, CG 30S ribosomal protein S7 300852  
98 4NXN 7 G ribosomal protein S7 300852  
99 1XNR 9 G 16S Ribosomal protein S7 274  
100 4LT8 7 QG, XG 30S ribosomal protein S7 300852  
101 4V51 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
102 4V7L 7 AG, CG 30S ribosomal protein S7 300852  
103 4V5R 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
104 1HNZ 8 G 30S RIBOSOMAL PROTEIN S7 274  
105 1XNQ 9 G Ribosomal protein S7 274  
106 4V8A 37 CG, DG 30S ribosomal protein S7 300852  
107 4V5K 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
108 4V5Q 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
109 4V7J 6 Ag, Bg 30S ribosomal protein S7 300852  
110 4V5C 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
111 4V5E 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
112 4L47 7 QG, XG 30S ribosomal protein S7 300852  
113 4V5P 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
114 4V5D 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
115 4V7Z 7 AG, CG 30S ribosomal protein S7 300852  
116 4V8X 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
117 4V5S 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
118 4V9I 7 AG, CG 30S Ribosomal protein S7 300852  
119 1XMO 9 G 30S ribosomal protein S7 274  
120 3T1H 7 G 30S ribosomal protein S7 300852  
121 2UXD 7 G RIBOSOMAL PROTEIN S7 300852  
122 1N33 9 G 30S RIBOSOMAL PROTEIN S7 274  
123 1IBK 8 G 30S RIBOSOMAL PROTEIN S7 274  
124 4V6G 7 AJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
125 4V8N 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
126 4V97 7 AG, CG 30S ribosomal protein S7 300852  
127 1HNW 8 G 30S RIBOSOMAL PROTEIN S7 274  
128 4V7M 7 AG, CG 30S ribosomal protein S7 300852  
129 1IBM 10 G 30S RIBOSOMAL PROTEIN S7 274  
130 4V6A 7 AG, CG 30S ribosomal protein S7 300852  
131 4V84 7 AG, CG 30S ribosomal protein S7 262724  
132 4V7K 6 Ag, Bg 30S ribosomal protein S7 300852  
133 1HNX 8 G 30S RIBOSOMAL PROTEIN S7 274  
134 4V9Q 37 BG, DG 30S ribosomal protein S7 262724  
135 4V9N 10 AG, CG 30S ribosomal protein S7 262724  
136 4P70 7 QG, XG 30S ribosomal protein S7 300852  
137 4V8U 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
138 4LSK 7 QG, XG 30S ribosomal protein S7 300852  
139 4P6F 7 QG, XG 30S ribosomal protein S7 300852  
140 4V67 9 AG, CG 30S ribosomal protein S7 274  
141 4V83 7 AG, CG 30S ribosomal protein S7 262724  
142 4V5F 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
143 1VVJ 7 QG, XG 30S ribosomal protein S7 300852  
144 4LFZ 7 QG, XG 30S ribosomal protein S7 300852  
145 2E5L 8 G 30S ribosomal protein S7 274  
146 2HHH 7 G 30S ribosomal protein S7 300852  
147 4OX9 7 G 30S ribosomal protein S7 300852  
148 2UXB 7 G RIBOSOMAL PROTEIN S7 300852  
149 1I96 7 G 30S RIBOSOMAL PROTEIN S7 274  
150 4V9K 6 AG, CG 30S ribosomal protein S7 262724  
151 1N34 8 G 30S RIBOSOMAL PROTEIN S7 274  
152 4V5A 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
153 4V63 9 AG, CG 30S ribosomal protein S7 262724  
154 4L71 7 QG, XG 30S ribosomal protein S7 300852  
155 4KVB 7 G 30S ribosomal protein S7 262724  
156 4V7P 7 AG, DG 30S ribosomal protein S7 262724  
157 4V8J 7 AG, CG 30S ribosomal protein S7 300852  
158 1N36 7 G 30S RIBOSOMAL PROTEIN S7 274  
159 2ZM6 7 G 30S ribosomal protein S7 274  
160 4LEL 7 QG, XG 30S ribosomal protein S7 300852  
161 2F4V 8 G 30S ribosomal protein S7 274  
162 4V9L 6 AG, CG 30S ribosomal protein S7 262724  
163 1FKA 7 G 30S RIBOSOMAL PROTEIN S7 274  
164 4V5G 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
165 1I97 7 G 30S RIBOSOMAL PROTEIN S7 274  
166 4V9J 6 AG, CG 30S ribosomal protein S7 262724  
167 1I95 7 G 30S RIBOSOMAL PROTEIN S7 274  
168 4V8O 7 AG 30S RIBOSOMAL PROTEIN S7 300852  
169 4V9M 6 AG, CG 30S ribosomal protein S7 262724  
170 4W29 6 AG, CG 30S ribosomal protein S7 262724  
171 4V4Y 9 AJ 30S ribosomal protein S7 300852  
172 4V4J 40 h 30S ribosomal protein S7 262724  
173 4V4X 9 AJ 30S ribosomal protein S7 300852  
174 4V4Z 10 AJ 30S ribosomal protein S7 300852  
175 4V4I 40 h 30S ribosomal protein S7 262724  
176 4V4P 42 BJ 30S ribosomal protein S7 300852  
177 4V4R 10 AG 30S ribosomal protein S7 300852  
178 4V4S 10 AG 30S ribosomal protein S7 300852  
179 4V4T 10 AG 30S ribosomal protein S7 300852  
180 4V49 9 AG 30S ribosomal protein S7 562  
181 4V4A 7 AG 30S ribosomal protein S7 562  
182 4V4G 7 AG, CG, EG, GG, IG 30S ribosomal protein S7 562  
183 4V5N 7 AG 30S RIBOSOMAL PROTEIN S7 300852  
184 4V5M 7 AG 30S RIBOSOMAL PROTEIN S7 300852  
185 4V68 15 AG 30S ribosomal protein S7 274  
186 1X18 6 F 30S ribosomal protein S7 274  
187 1ML5 12 J 30S RIBOSOMAL PROTEIN S7 562  
188 1JGO 10 J 30S RIBOSOMAL PROTEIN S7 274  
189 1JGP 10 J 30S RIBOSOMAL PROTEIN S7 274  
190 1JGQ 10 J 30S RIBOSOMAL PROTEIN S7 274  
191 4V42 10 AJ 30S RIBOSOMAL PROTEIN S7 274  
192 1EG0 8 D PROTEIN (S7 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1RSS 562  
193 1DV4 3 G RIBOSOMAL PROTEIN S7 RESIDUES 12-146 274  
194 1QD7 6 F S7 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 187 27
95% 29 188 47
90% 29 188 50
70% 29 188 60
50% 39 269 34
40% 39 269 46
30% 39 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 25
95% 29 189 43
90% 29 189 46
70% 29 189 56
50% 33 263 41
40% 40 316 35
30% 40 316 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17436
95% 29 196 35
90% 29 196 37
70% 33 275 24
50% 33 275 33
40% 33 275 45
30% 33 275 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 22
95% 29 190 41
90% 29 190 44
70% 29 190 54
50% 33 268 38
40% 33 268 51
30% 38 317 50
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 188 26
95% 29 188 48
90% 29 188 51
70% 29 188 61
50% 29 188 94
40% 29 188 119
30% 29 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 20
95% 31 197 33
90% 31 197 35
70% 31 197 47
50% 38 276 32
40% 38 276 43
30% 38 276 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 28
95% 29 189 45
90% 29 189 48
70% 29 189 58
50% 29 189 92
40% 29 189 117
30% 33 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 104 54
95% 29 183 49
90% 29 187 52
70% 29 187 62
50% 29 187 95
40% 29 187 120
30% 29 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 48
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 139
30% 26 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 266 37
40% 34 266 49
30% 34 266 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 23
95% 29 190 38
90% 29 190 42
70% 29 190 52
50% 29 190 91
40% 33 263 53
30% 33 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 140 42
95% 29 188 46
90% 29 188 49
70% 29 188 59
50% 29 188 93
40% 29 188 118
30% 29 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 179 34
95% 29 179 53
90% 29 179 55
70% 29 179 68
50% 29 179 105
40% 29 179 132
30% 29 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 166 38
95% 26 166 63
90% 26 166 66
70% 26 166 82
50% 27 206 75
40% 27 206 100
30% 27 206 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 182 29
95% 29 190 39
90% 29 190 43
70% 29 190 53
50% 33 263 39
40% 33 264 52
30% 33 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 24
95% 29 189 42
90% 29 189 45
70% 29 189 55
50% 34 267 36
40% 34 267 48
30% 34 269 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 194 18
95% 36 200 29
90% 36 200 30
70% 36 200 44
50% 36 200 86
40% 36 200 108
30% 41 236 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 193 19
95% 30 194 36
90% 30 194 38
70% 30 194 49
50% 34 234 56
40% 34 235 74
30% 34 235 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 21
95% 30 189 40
90% 30 193 39
70% 30 193 51
50% 36 269 35
40% 37 271 47
30% 43 321 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 76
95% 29 189 44
90% 29 189 47
70% 29 189 57
50% 33 263 40
40% 33 263 54
30% 38 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.