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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 18 Members. Sequence cutoff: 100% Cluster size: 200 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1RSS 1 A RIBOSOMAL PROTEIN S7 274  
2 4W2F 7 AG, CG 30S Ribosomal Protein S7 300852  
3 4W2G 7 AG, CG 30S Ribosomal Protein S7 300852  
4 4LFB 7 G ribosomal protein S7 300852  
5 1VY4 7 AG, CG 30S ribosomal protein S7 300852  
6 4W2I 7 AG, CG 30S Ribosomal Protein S7 300852  
7 1VY5 7 AG, CG 30S ribosomal protein S7 300852  
8 4WQF 40 BG, DG 30S ribosomal protein S7 300852  
9 4W2H 7 AG, CG 30S Ribosomal Protein S7 300852  
10 4WPO 40 BG, DG 30S ribosomal protein S7 300852  
11 4V8I 7 AG, CG 30S Ribosomal Protein S7 274  
12 4JI1 7 G RIBOSOMAL PROTEIN S7 300852  
13 4DR6 7 G 30S ribosomal protein S7 300852  
14 4LF7 7 G ribosomal protein S7 300852  
15 4LF8 7 G ribosomal protein S7 300852  
16 4WQU 40 BG, DG 30S ribosomal protein S7 300852  
17 2VQE 7 G 30S RIBOSOMAL PROTEIN S7 300852  
18 2UUB 7 G 30S RIBOSOMAL PROTEIN S7 300852  
19 4DV6 7 G ribosomal protein S7 300852  
20 4JYA 7 G 30S ribosomal protein S7 300852  
21 4DR5 7 G 30S ribosomal protein S7 300852  
22 4KHP 7 G 30S Ribosomal protein S7 300852  
23 4DR2 7 G 30S ribosomal protein S7 300852  
24 4LF9 7 G ribosomal protein S7 300852  
25 4WQY 40 BG, DG 30S ribosomal protein S7 300852  
26 4DUY 7 G ribosomal protein S7 300852  
27 4DV7 7 G ribosomal protein S7 300852  
28 4V9H 20 AG 30S ribosomal protein S7 300852  
29 4V8D 7 AJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
30 4DR3 7 G 30S ribosomal protein S7 300852  
31 4V90 7 AG 30S RIBOSOMAL PROTEIN S7 300852  
32 4JI3 7 G RIBOSOMAL PROTEIN S7 300852  
33 4JI6 7 G RIBOSOMAL PROTEIN S7 300852  
34 4JI8 7 G RIBOSOMAL PROTEIN S7 300852  
35 2UXC 7 G RIBOSOMAL PROTEIN S7 300852  
36 4V9R 7 AG, CG 30S Ribosomal Protein S7 274  
37 4B3M 7 G 30S RIBOSOMAL PROTEIN S7 300852  
38 4LF4 7 G ribosomal protein S7 300852  
39 4LF6 7 G ribosomal protein S7 300852  
40 4JI7 7 G RIBOSOMAL PROTEIN S7 300852  
41 4B3T 7 G 30S RIBOSOMAL PROTEIN S7 300852  
42 4V8B 7 AJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
43 2VQF 7 G 30S RIBOSOMAL PROTEIN S7 300852  
44 2UUA 7 G 30S RIBOSOMAL PROTEIN S7 300852  
45 4V87 37 BJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
46 4V95 7 AG, CG 30S Ribosomal Protein S7 274  
47 1VY7 7 AG, CG 30S ribosomal protein S7 300852  
48 4B3R 7 G 30S RIBOSOMAL PROTEIN S7 300852  
49 4LNT 7 QG, XG 30S ribosomal protein S7 300852  
50 4DR1 7 G 30S ribosomal protein S7 300852  
51 4LFA 7 G ribosomal protein S7 300852  
52 4DV4 7 G ribosomal protein S7 300852  
53 4JI0 7 G ribosomal protein S7 300852  
54 4V9S 7 AG, CG 30S Ribosomal Protein S7 274  
55 4JI2 7 G RIBOSOMAL PROTEIN S7 300852  
56 4JV5 7 G 30S ribosomal protein S7 300852  
57 4DR7 7 G 30S ribosomal protein S7 300852  
58 1J5E 7 G 30S RIBOSOMAL PROTEIN S7 274  
59 4GKK 7 G 30S ribosomal protein S7 300852  
60 4DUZ 7 G ribosomal protein S7 300852  
61 4V8G 7 AG, CG 30S Ribosomal Protein S7 300852  
62 4GKJ 7 G 30S ribosomal protein S7 300852  
63 4DV3 7 G ribosomal protein S7 300852  
64 4DV5 7 G ribosomal protein S7 300852  
65 2UUC 7 G 30S RIBOSOMAL PROTEIN S7 300852  
66 4LFC 7 G ribosomal protein S7 300852  
67 1FJG 8 G 30S RIBOSOMAL PROTEIN S7 274  
68 3T1Y 7 G 30S ribosomal protein S7 300852  
69 4JI4 7 G RIBOSOMAL PROTEIN S7 300852  
70 1VY6 7 AG, CG 30S ribosomal protein S7 300852  
71 1XMQ 9 G 30S Ribosomal Protein S7 274  
72 4DV0 7 G ribosomal protein S7 300852  
73 4V9B 7 AJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
74 4V6F 37 BJ, CJ 30S ribosomal protein S7 300852  
75 4V8F 37 BJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
76 4B3S 7 G 30S RIBOSOMAL PROTEIN S7 300852  
77 4DV2 7 G ribosomal protein S7 300852  
78 4DV1 7 G ribosomal protein S7 300852  
79 1N32 9 G 30S RIBOSOMAL PROTEIN S7 274  
80 1I94 7 G 30S RIBOSOMAL PROTEIN S7 274  
81 4V8H 7 AG, CG 30S Ribosomal Protein S7 300852  
82 4JI5 7 G RIBOSOMAL PROTEIN S7 300852  
83 4K0K 7 G 30S ribosomal protein S7 300852  
84 4W2E 40 g 30S ribosomal protein S7 300852  
85 4V8C 37 CJ, DJ 30S RIBOSOMAL PROTEIN S7 300852  
86 4LF5 7 G ribosomal protein S7 300852  
87 4V9A 7 AJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
88 4V5J 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
89 4V7Y 7 AG, CG 30S ribosomal protein S7 300852  
90 4V8E 37 BJ, DJ 30S RIBOSOMAL PROTEIN S7 300852  
91 4DR4 7 G 30S ribosomal protein S7 300852  
92 3OTO 7 G 30S RIBOSOMAL PROTEIN S7 300852  
93 2UU9 7 G 30S RIBOSOMAL PROTEIN S7 300852  
94 4V8Q 41 BG 30S RIBOSOMAL PROTEIN S7 300852  
95 1HR0 8 G 30S RIBOSOMAL PROTEIN S7 274  
96 4AQY 7 G 30S RIBOSOMAL PROTEIN S7 274  
97 4NXM 7 G ribosomal protein S7 300852  
98 4V5L 7 AG 30S RIBOSOMAL PROTEIN S7 300852  
99 4V7X 7 AG, CG 30S ribosomal protein S7 300852  
100 1IBL 10 G 30S RIBOSOMAL PROTEIN S7 274  
101 4V7W 7 AG, CG 30S ribosomal protein S7 300852  
102 4WUS 8 G 30S ribosomal protein S7 300852  
103 4WT8 7 G 30S ribosomal protein S7 300852  
104 4NXN 7 G ribosomal protein S7 300852  
105 1XNR 9 G 16S Ribosomal protein S7 274  
106 4LT8 7 QG, XG 30S ribosomal protein S7 300852  
107 4V51 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
108 4V7L 7 AG, CG 30S ribosomal protein S7 300852  
109 4V5R 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
110 1HNZ 8 G 30S RIBOSOMAL PROTEIN S7 274  
111 1XNQ 9 G Ribosomal protein S7 274  
112 4V8A 37 CG, DG 30S ribosomal protein S7 300852  
113 4V5K 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
114 4V5Q 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
115 4V7J 6 Ag, Bg 30S ribosomal protein S7 300852  
116 4V5C 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
117 4V5E 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
118 4L47 7 QG, XG 30S ribosomal protein S7 300852  
119 4V5P 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
120 4V5D 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
121 4V7Z 7 AG, CG 30S ribosomal protein S7 300852  
122 4V8X 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
123 4V5S 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
124 4V9I 7 AG, CG 30S Ribosomal protein S7 300852  
125 1XMO 9 G 30S ribosomal protein S7 274  
126 3T1H 7 G 30S ribosomal protein S7 300852  
127 2UXD 7 G RIBOSOMAL PROTEIN S7 300852  
128 1N33 9 G 30S RIBOSOMAL PROTEIN S7 274  
129 1IBK 8 G 30S RIBOSOMAL PROTEIN S7 274  
130 4V6G 7 AJ, CJ 30S RIBOSOMAL PROTEIN S7 300852  
131 4V8N 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
132 4V97 7 AG, CG 30S ribosomal protein S7 300852  
133 1HNW 8 G 30S RIBOSOMAL PROTEIN S7 274  
134 4V7M 7 AG, CG 30S ribosomal protein S7 300852  
135 1IBM 10 G 30S RIBOSOMAL PROTEIN S7 274  
136 4V6A 7 AG, CG 30S ribosomal protein S7 300852  
137 4V84 7 AG, CG 30S ribosomal protein S7 262724  
138 4V7K 6 Ag, Bg 30S ribosomal protein S7 300852  
139 1HNX 8 G 30S RIBOSOMAL PROTEIN S7 274  
140 4V9Q 37 BG, DG 30S ribosomal protein S7 262724  
141 4V9N 10 AG, CG 30S ribosomal protein S7 262724  
142 4P70 7 QG, XG 30S ribosomal protein S7 300852  
143 4V8U 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
144 4LSK 7 QG, XG 30S ribosomal protein S7 300852  
145 4P6F 7 QG, XG 30S ribosomal protein S7 300852  
146 4V67 9 AG, CG 30S ribosomal protein S7 274  
147 4V83 7 AG, CG 30S ribosomal protein S7 262724  
148 4V5F 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
149 1VVJ 7 QG, XG 30S ribosomal protein S7 300852  
150 4LFZ 7 QG, XG 30S ribosomal protein S7 300852  
151 2E5L 8 G 30S ribosomal protein S7 274  
152 2HHH 7 G 30S ribosomal protein S7 300852  
153 4OX9 7 G 30S ribosomal protein S7 300852  
154 2UXB 7 G RIBOSOMAL PROTEIN S7 300852  
155 1I96 7 G 30S RIBOSOMAL PROTEIN S7 274  
156 4V9K 6 AG, CG 30S ribosomal protein S7 262724  
157 1N34 8 G 30S RIBOSOMAL PROTEIN S7 274  
158 4V5A 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
159 4V63 9 AG, CG 30S ribosomal protein S7 262724  
160 4L71 7 QG, XG 30S ribosomal protein S7 300852  
161 4KVB 7 G 30S ribosomal protein S7 262724  
162 4XEJ 34 AS07, BS07 30S ribosomal protein S7 262724  
163 4V7P 7 AG, DG 30S ribosomal protein S7 262724  
164 4V8J 7 AG, CG 30S ribosomal protein S7 300852  
165 1N36 7 G 30S RIBOSOMAL PROTEIN S7 274  
166 2ZM6 7 G 30S ribosomal protein S7 274  
167 4LEL 7 QG, XG 30S ribosomal protein S7 300852  
168 2F4V 8 G 30S ribosomal protein S7 274  
169 4V9L 6 AG, CG 30S ribosomal protein S7 262724  
170 1FKA 7 G 30S RIBOSOMAL PROTEIN S7 274  
171 4V5G 7 AG, CG 30S RIBOSOMAL PROTEIN S7 300852  
172 1I97 7 G 30S RIBOSOMAL PROTEIN S7 274  
173 4V9J 6 AG, CG 30S ribosomal protein S7 262724  
174 1I95 7 G 30S RIBOSOMAL PROTEIN S7 274  
175 4V8O 7 AG 30S RIBOSOMAL PROTEIN S7 300852  
176 4V9M 6 AG, CG 30S ribosomal protein S7 262724  
177 4W29 6 AG, CG 30S ribosomal protein S7 262724  
178 4V4Y 9 AJ 30S ribosomal protein S7 300852  
179 4V4J 40 h 30S ribosomal protein S7 262724  
180 4V4X 9 AJ 30S ribosomal protein S7 300852  
181 4V4Z 10 AJ 30S ribosomal protein S7 300852  
182 4V4I 40 h 30S ribosomal protein S7 262724  
183 4V4P 42 BJ 30S ribosomal protein S7 300852  
184 4V4R 10 AG 30S ribosomal protein S7 300852  
185 4V4S 10 AG 30S ribosomal protein S7 300852  
186 4V4T 10 AG 30S ribosomal protein S7 300852  
187 4V49 9 AG 30S ribosomal protein S7 562  
188 4V4A 7 AG 30S ribosomal protein S7 562  
189 4V4G 7 AG, CG, EG, GG, IG 30S ribosomal protein S7 562  
190 4V5N 7 AG 30S RIBOSOMAL PROTEIN S7 300852  
191 4V5M 7 AG 30S RIBOSOMAL PROTEIN S7 300852  
192 4V68 15 AG 30S ribosomal protein S7 274  
193 1ML5 12 J 30S RIBOSOMAL PROTEIN S7 562  
194 1JGO 10 J 30S RIBOSOMAL PROTEIN S7 274  
195 1JGP 10 J 30S RIBOSOMAL PROTEIN S7 274  
196 1JGQ 10 J 30S RIBOSOMAL PROTEIN S7 274  
197 4V42 10 AJ 30S RIBOSOMAL PROTEIN S7 274  
198 1EG0 8 D PROTEIN (S7 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1RSS 562  
199 1DV4 3 G RIBOSOMAL PROTEIN S7 RESIDUES 12-146 274  
200 1QD7 6 F S7 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 28
95% 33 195 46
90% 33 195 48
70% 33 195 59
50% 43 276 35
40% 43 276 45
30% 48 326 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 26
95% 33 196 42
90% 33 196 44
70% 33 196 55
50% 37 270 42
40% 44 325 36
30% 44 325 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17765
95% 33 203 31
90% 33 203 33
70% 37 282 24
50% 37 282 34
40% 37 282 44
30% 37 282 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 197 23
95% 33 197 38
90% 33 197 40
70% 33 197 52
50% 37 275 39
40% 37 275 51
30% 42 326 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 27
95% 33 195 47
90% 33 195 49
70% 33 195 60
50% 33 195 92
40% 33 195 116
30% 33 195 139
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 199 19
95% 35 204 30
90% 35 204 32
70% 35 204 44
50% 42 283 33
40% 42 283 43
30% 42 283 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 191 29
95% 33 196 44
90% 33 196 46
70% 33 196 57
50% 33 196 89
40% 33 196 114
30% 37 273 77
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 66
95% 33 190 49
90% 33 194 50
70% 33 194 61
50% 33 194 93
40% 33 194 117
30% 33 194 141
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 59
95% 30 172 70
90% 30 172 74
70% 30 172 88
50% 30 172 125
40% 30 172 146
30% 30 172 165
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 47
95% 31 174 69
90% 31 174 73
70% 31 174 87
50% 38 273 38
40% 38 273 49
30% 38 273 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 24
95% 33 197 35
90% 33 197 38
70% 33 197 50
50% 33 197 88
40% 37 270 53
30% 37 270 76
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 54
95% 33 195 45
90% 33 195 47
70% 33 195 58
50% 33 195 91
40% 33 195 115
30% 33 195 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 186 32
95% 33 186 51
90% 33 186 54
70% 33 186 66
50% 33 186 110
40% 33 186 133
30% 33 186 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 48
95% 30 171 72
90% 30 171 76
70% 30 171 90
50% 31 210 76
40% 31 210 101
30% 31 210 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 189 30
95% 33 197 36
90% 33 197 39
70% 33 197 51
50% 37 270 40
40% 37 271 52
30% 37 271 75
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 25
95% 33 196 40
90% 33 196 42
70% 33 196 54
50% 38 274 37
40% 38 274 48
30% 38 276 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 201 17
95% 40 207 29
90% 40 207 31
70% 40 207 42
50% 40 207 81
40% 40 207 108
30% 45 244 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 18
95% 34 201 33
90% 34 201 35
70% 34 201 46
50% 38 242 55
40% 38 243 71
30% 38 243 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 196 22
95% 34 196 37
90% 34 200 36
70% 34 200 47
50% 40 276 36
40% 41 278 46
30% 47 330 45
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 86
95% 33 196 43
90% 33 196 45
70% 33 196 56
50% 37 270 41
40% 37 270 54
30% 42 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.