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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 29 Members. Sequence cutoff: 95% Cluster size: 206 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1CQM 1 A, B RIBOSOMAL PROTEIN S6 274  
2 1RIS 1 A RIBOSOMAL PROTEIN S6 274  
3 1LOU 1 A RIBOSOMAL PROTEIN S6 274  
4 2BVZ 1 A 30S RIBOSOMAL PROTEIN S6 274  
5 1CQN 1 A, B RIBOSOMAL PROTEIN S6 274  
6 1QJH 1 A RIBOSOMAL PROTEIN S6 274  
7 2BXJ 1 A, B 30S RIBOSOMAL PROTEIN S6 274  
8 4W2F 6 AF, CF 30S Ribosomal Protein S6 300852  
9 4W2G 6 AF, CF 30S Ribosomal Protein S6 300852  
10 4LFB 6 F ribosomal protein S6 300852  
11 1VY4 6 AF, CF 30S ribosomal protein S6 300852  
12 4W2I 6 AF, CF 30S Ribosomal Protein S6 300852  
13 1VY5 6 AF, CF 30S ribosomal protein S6 300852  
14 4WQF 39 BF, DF 30S ribosomal protein S6 300852  
15 4W2H 6 AF, CF 30S Ribosomal Protein S6 300852  
16 4WPO 39 BF, DF 30S ribosomal protein S6 300852  
17 4V8I 6 AF, CF 30S Ribosomal Protein S6 274  
18 4JI1 6 F RIBOSOMAL PROTEIN S6 300852  
19 4DR6 6 F 30S ribosomal protein S6 300852  
20 4LF7 6 F ribosomal protein S6 300852  
21 4LF8 6 F ribosomal protein S6 300852  
22 4WQU 39 BF, DF 30S ribosomal protein S6 300852  
23 2VQE 6 F 30S RIBOSOMAL PROTEIN S6 300852  
24 2UUB 6 F 30S RIBOSOMAL PROTEIN S6 300852  
25 4DV6 6 F ribosomal protein S6 300852  
26 4JYA 6 F 30S ribosomal protein S6 300852  
27 4DR5 6 F 30S ribosomal protein S6 300852  
28 4KHP 6 F 30S Ribosomal protein S6 300852  
29 4DR2 6 F 30S ribosomal protein S6 300852  
30 4LF9 6 F ribosomal protein S6 300852  
31 4WQY 39 BF, DF 30S ribosomal protein S6 300852  
32 4DUY 6 F ribosomal protein S6 300852  
33 4DV7 6 F ribosomal protein S6 300852  
34 4V9H 19 AF 30S ribosomal protein S6 300852  
35 4V8D 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
36 4DR3 6 F 30S ribosomal protein S6 300852  
37 4V90 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
38 4JI3 6 F RIBOSOMAL PROTEIN S6 300852  
39 4JI6 6 F RIBOSOMAL PROTEIN S6 300852  
40 4JI8 6 F RIBOSOMAL PROTEIN S6 300852  
41 2UXC 6 F RIBOSOMAL PROTEIN S6 300852  
42 4V9R 6 AF, CF 30S Ribosomal Protein S6 274  
43 4B3M 6 F 30S RIBOSOMAL PROTEIN S6 300852  
44 4LF4 6 F ribosomal protein S6 300852  
45 4LF6 6 F ribosomal protein S6 300852  
46 4JI7 6 F RIBOSOMAL PROTEIN S6 300852  
47 4B3T 6 F 30S RIBOSOMAL PROTEIN S6 300852  
48 4V8B 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
49 2VQF 6 F 30S RIBOSOMAL PROTEIN S6 300852  
50 2UUA 6 F 30S RIBOSOMAL PROTEIN S6 300852  
51 4V87 36 BI, CI 30S RIBOSOMAL PROTEIN S6 300852  
52 4V95 6 AF, CF 30S Ribosomal Protein S6 274  
53 1VY7 6 AF, CF 30S ribosomal protein S6 300852  
54 4B3R 6 F 30S RIBOSOMAL PROTEIN S6 300852  
55 4LNT 6 QF, XF 30S ribosomal protein S6 300852  
56 1G1X 3 A, F 30S RIBOSOMAL PROTEIN S6 274  
57 4DR1 6 F 30S ribosomal protein S6 300852  
58 4LFA 6 F ribosomal protein S6 300852  
59 4DV4 6 F ribosomal protein S6 300852  
60 4JI0 6 F ribosomal protein S6 300852  
61 4V9S 6 AF, CF 30S Ribosomal Protein S6 274  
62 4JI2 6 F RIBOSOMAL PROTEIN S6 300852  
63 4JV5 6 F 30S ribosomal protein S6 300852  
64 4DR7 6 F 30S ribosomal protein S6 300852  
65 1J5E 6 F 30S RIBOSOMAL PROTEIN S6 274  
66 4GKK 6 F 30S ribosomal protein S6 300852  
67 4DUZ 6 F ribosomal protein S6 300852  
68 4V8G 6 AF, CF 30S Ribosomal Protein S6 300852  
69 4GKJ 6 F 30S ribosomal protein S6 300852  
70 4DV3 6 F ribosomal protein S6 300852  
71 4DV5 6 F ribosomal protein S6 300852  
72 2UUC 6 F 30S RIBOSOMAL PROTEIN S6 300852  
73 4LFC 6 F ribosomal protein S6 300852  
74 1FJG 7 F 30S RIBOSOMAL PROTEIN S6 274  
75 3T1Y 6 F 30S ribosomal protein S6 300852  
76 4JI4 6 F RIBOSOMAL PROTEIN S6 300852  
77 1VY6 6 AF, CF 30S ribosomal protein S6 300852  
78 1XMQ 8 F 30S Ribosomal Protein S6 274  
79 4DV0 6 F ribosomal protein S6 300852  
80 4V9B 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
81 4V6F 36 BI, CI 30S ribosomal protein S6 300852  
82 4V8F 36 BI, CI 30S RIBOSOMAL PROTEIN S6 300852  
83 4B3S 6 F 30S RIBOSOMAL PROTEIN S6 300852  
84 4DV2 6 F ribosomal protein S6 300852  
85 4DV1 6 F ribosomal protein S6 300852  
86 1N32 8 F 30S RIBOSOMAL PROTEIN S6 274  
87 1I94 6 F 30S RIBOSOMAL PROTEIN S6 274  
88 4V8H 6 AF, CF 30S Ribosomal Protein S6 300852  
89 4JI5 6 F RIBOSOMAL PROTEIN S6 300852  
90 4K0K 6 F 30S ribosomal protein S6 300852  
91 4W2E 39 f 30S ribosomal protein S6 300852  
92 4V8C 36 CI, DI 30S RIBOSOMAL PROTEIN S6 300852  
93 4LF5 6 F ribosomal protein S6 300852  
94 4V9A 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
95 4V5J 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
96 4V7Y 6 AF, CF 30S ribosomal protein S6 300852  
97 4V8E 36 BI, DI 30S RIBOSOMAL PROTEIN S6 300852  
98 4DR4 6 F 30S ribosomal protein S6 300852  
99 3OTO 6 F 30S RIBOSOMAL PROTEIN S6 300852  
100 2UU9 6 F 30S RIBOSOMAL PROTEIN S6 300852  
101 4V8Q 40 BF 30S RIBOSOMAL PROTEIN S6 300852  
102 1HR0 7 F 30S RIBOSOMAL PROTEIN S6 274  
103 4AQY 6 F 30S RIBOSOMAL PROTEIN S6 274  
104 4NXM 6 F ribosomal protein S6 300852  
105 4V5L 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
106 4V7X 6 AF, CF 30S ribosomal protein S6 300852  
107 1IBL 9 F 30S RIBOSOMAL PROTEIN S6 274  
108 4V7W 6 AF, CF 30S ribosomal protein S6 300852  
109 4WUS 7 F 30S ribosomal protein S6 300852  
110 4WT8 6 F 30S ribosomal protein S6 300852  
111 4NXN 6 F ribosomal protein S6 300852  
112 1XNR 8 F 16S Ribosomal protein S6 274  
113 4LT8 6 QF, XF 30S ribosomal protein S6 300852  
114 4V51 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
115 4V7L 6 AF, CF 30S ribosomal protein S6 300852  
116 4V5R 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
117 1HNZ 7 F 30S RIBOSOMAL PROTEIN S6 274  
118 1XNQ 8 F Ribosomal protein S6 274  
119 4V8A 36 CF, DF 30S ribosomal protein S6 300852  
120 4V5K 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
121 4V5Q 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
122 4V7J 5 Af, Bf 30S ribosomal protein S6 300852  
123 4V5C 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
124 4V5E 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
125 4L47 6 QF, XF 30S ribosomal protein S6 300852  
126 4V5P 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
127 4V5D 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
128 4V7Z 6 AF, CF 30S ribosomal protein S6 300852  
129 4V8X 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
130 4V5S 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
131 4V9I 6 AF, CF 30S Ribosomal protein S6 300852  
132 1XMO 8 F 30S ribosomal protein S6 274  
133 3T1H 6 F 30S ribosomal protein S6 300852  
134 2UXD 6 F RIBOSOMAL PROTEIN S6 300852  
135 1N33 8 F 30S RIBOSOMAL PROTEIN S6 274  
136 1IBK 7 F 30S RIBOSOMAL PROTEIN S6 274  
137 4V6G 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
138 4V8N 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
139 4V97 6 AF, CF 30S ribosomal protein S6 300852  
140 1HNW 7 F 30S RIBOSOMAL PROTEIN S6 274  
141 4V7M 6 AF, CF 30S ribosomal protein S6 300852  
142 1IBM 9 F 30S RIBOSOMAL PROTEIN S6 274  
143 4V6A 6 AF, CF 30S ribosomal protein S6 300852  
144 4V84 6 AF, CF 30S ribosomal protein S6 262724  
145 4V7K 5 Af, Bf 30S ribosomal protein S6 300852  
146 1HNX 7 F 30S RIBOSOMAL PROTEIN S6 274  
147 4V9Q 36 BF, DF 30S ribosomal protein S6 262724  
148 4V9N 9 AF, CF 30S ribosomal protein S6 262724  
149 4P70 6 QF, XF 30S ribosomal protein S6 300852  
150 4V8U 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
151 4LSK 6 QF, XF 30S ribosomal protein S6 300852  
152 4P6F 6 QF, XF 30S ribosomal protein S6 300852  
153 4V67 8 AF, CF 30S ribosomal protein S6 274  
154 4V83 6 AF, CF 30S ribosomal protein S6 262724  
155 4V5F 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
156 1VVJ 6 QF, XF 30S ribosomal protein S6 300852  
157 4LFZ 6 QF, XF 30S ribosomal protein S6 300852  
158 2E5L 7 F 30S ribosomal protein S6 274  
159 2HHH 6 F 30S ribosomal protein S6 300852  
160 4OX9 6 F 30S ribosomal protein S6 300852  
161 2UXB 6 F RIBOSOMAL PROTEIN S6 300852  
162 1I96 6 F 30S RIBOSOMAL PROTEIN S6 274  
163 4V9K 5 AF, CF 30S ribosomal protein S6 262724  
164 1N34 7 F 30S RIBOSOMAL PROTEIN S6 274  
165 4V5A 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
166 4V63 8 AF, CF 30S ribosomal protein S6 262724  
167 4L71 6 QF, XF 30S ribosomal protein S6 300852  
168 4KVB 6 F 30S ribosomal protein S6 262724  
169 4V7P 6 AF, DF 30S ribosomal protein S6 262724  
170 4V8J 6 AF, CF 30S ribosomal protein S6 300852  
171 1N36 6 F 30S RIBOSOMAL PROTEIN S6 274  
172 2ZM6 6 F 30S ribosomal protein S6 274  
173 4LEL 6 QF, XF 30S ribosomal protein S6 300852  
174 2F4V 7 F 30S ribosomal protein S6 274  
175 4V9L 5 AF, CF 30S ribosomal protein S6 262724  
176 1FKA 6 F 30S RIBOSOMAL PROTEIN S6 274  
177 4V5G 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
178 1I97 6 F 30S RIBOSOMAL PROTEIN S6 274  
179 4V9J 5 AF, CF 30S ribosomal protein S6 262724  
180 1I95 6 F 30S RIBOSOMAL PROTEIN S6 274  
181 4V8O 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
182 4V9M 5 AF, CF 30S ribosomal protein S6 262724  
183 4W29 5 AF, CF 30S ribosomal protein S6 262724  
184 4V4Y 8 AI 30S ribosomal protein S6 300852  
185 4V4J 39 g 30S ribosomal protein S6 262724  
186 4V4X 8 AI 30S ribosomal protein S6 300852  
187 4V4Z 9 AI 30S ribosomal protein S6 300852  
188 4V4I 39 g 30S ribosomal protein S6 262724  
189 4V4P 41 BI 30S ribosomal protein S6 300852  
190 4V4R 9 AF 30S ribosomal protein S6 300852  
191 4V4S 9 AF 30S ribosomal protein S6 300852  
192 4V4T 9 AF 30S ribosomal protein S6 300852  
193 4V49 8 AF 30S ribosomal protein S6 562  
194 4V4A 6 AF 30S ribosomal protein S6 562  
195 4V4G 6 AF, CF, EF, GF, IF 30S ribosomal protein S6 562  
196 4V5N 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
197 4V5M 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
198 2KJV 1 A 30S ribosomal protein S6 274  
199 4V68 5 AF 30S ribosomal protein S6 274  
200 1ML5 11 I 30S RIBOSOMAL PROTEIN S6 562  
201 1JGO 9 I 30S RIBOSOMAL PROTEIN S6 274  
202 1JGP 9 I 30S RIBOSOMAL PROTEIN S6 274  
203 1JGQ 9 I 30S RIBOSOMAL PROTEIN S6 274  
204 4V42 9 AI 30S RIBOSOMAL PROTEIN S6 274  
205 1EG0 7 C PROTEIN (S6 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF T.THERMOPHILUS TAKEN FROM PDB ENTRY 1RIS 562  
206 1QD7 5 E S6 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 193 28
95% 33 194 45
90% 33 194 47
70% 33 194 58
50% 43 275 34
40% 43 275 45
30% 43 280 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 26
95% 33 195 41
90% 33 195 43
70% 33 195 54
50% 37 269 41
40% 44 322 35
30% 44 322 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17605
95% 33 202 32
90% 33 202 33
70% 37 281 23
50% 37 281 33
40% 37 281 44
30% 37 281 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 23
95% 33 196 39
90% 33 196 41
70% 33 196 52
50% 37 274 38
40% 37 274 50
30% 42 323 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 27
95% 33 194 46
90% 33 194 48
70% 33 194 59
50% 33 194 92
40% 33 194 115
30% 33 194 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 198 21
95% 35 203 30
90% 35 203 31
70% 35 203 43
50% 42 282 32
40% 42 282 42
30% 42 282 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 190 29
95% 33 195 43
90% 33 195 45
70% 33 195 56
50% 33 195 89
40% 33 195 113
30% 37 272 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 54
95% 33 189 48
90% 33 193 50
70% 33 193 61
50% 33 193 95
40% 33 193 120
30% 33 193 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 47
95% 30 172 58
90% 30 172 62
70% 30 172 76
50% 30 172 111
40% 30 172 137
30% 30 172 156
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 36
95% 31 174 57
90% 31 174 61
70% 31 174 75
50% 38 272 37
40% 38 272 49
30% 38 272 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 24
95% 33 196 36
90% 33 196 39
70% 33 196 50
50% 33 196 87
40% 37 269 52
30% 37 269 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 42
95% 33 194 44
90% 33 194 46
70% 33 194 57
50% 33 194 91
40% 33 194 114
30% 33 194 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 185 32
95% 33 185 51
90% 33 185 54
70% 33 185 65
50% 33 185 101
40% 33 185 127
30% 33 185 147
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 37
95% 30 171 59
90% 30 171 63
70% 30 171 77
50% 31 210 73
40% 31 210 97
30% 31 210 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 188 30
95% 33 196 37
90% 33 196 40
70% 33 196 51
50% 37 269 39
40% 37 270 51
30% 37 270 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 25
95% 33 195 40
90% 33 195 42
70% 33 195 53
50% 38 273 36
40% 38 273 48
30% 38 275 70
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 17
95% 40 206 29
90% 40 206 30
70% 40 206 40
50% 40 206 80
40% 40 206 105
30% 45 243 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 199 20
95% 34 200 33
90% 34 200 34
70% 34 200 47
50% 38 241 54
40% 38 242 70
30% 38 242 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 195 22
95% 34 195 38
90% 34 199 35
70% 34 199 48
50% 40 275 35
40% 41 277 46
30% 47 327 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 73
95% 33 195 42
90% 33 195 44
70% 33 195 55
50% 37 269 40
40% 37 269 53
30% 42 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.