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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 31 Members. Sequence cutoff: 90% Cluster size: 210 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1CQM 1 A, B RIBOSOMAL PROTEIN S6 274  
2 1RIS 1 A RIBOSOMAL PROTEIN S6 274  
3 1LOU 1 A RIBOSOMAL PROTEIN S6 274  
4 2BVZ 1 A 30S RIBOSOMAL PROTEIN S6 274  
5 1CQN 1 A, B RIBOSOMAL PROTEIN S6 274  
6 1QJH 1 A RIBOSOMAL PROTEIN S6 274  
7 4Y4O 37 1f, 2f 30S ribosomal protein S6 300852  
8 2BXJ 1 A, B 30S RIBOSOMAL PROTEIN S6 274  
9 4W2F 6 AF, CF 30S Ribosomal Protein S6 300852  
10 4Y4P 37 1f, 2f 30S ribosomal protein S6 300852  
11 4W2G 6 AF, CF 30S Ribosomal Protein S6 300852  
12 4LFB 6 F ribosomal protein S6 300852  
13 1VY4 6 AF, CF 30S ribosomal protein S6 300852  
14 4W2I 6 AF, CF 30S Ribosomal Protein S6 300852  
15 1VY5 6 AF, CF 30S ribosomal protein S6 300852  
16 4WQF 39 BF, DF 30S ribosomal protein S6 300852  
17 4W2H 6 AF, CF 30S Ribosomal Protein S6 300852  
18 4WPO 39 BF, DF 30S ribosomal protein S6 300852  
19 4V8I 6 AF, CF 30S Ribosomal Protein S6 274  
20 4JI1 6 F RIBOSOMAL PROTEIN S6 300852  
21 4DR6 6 F 30S ribosomal protein S6 300852  
22 4LF7 6 F ribosomal protein S6 300852  
23 4LF8 6 F ribosomal protein S6 300852  
24 4WQU 39 BF, DF 30S ribosomal protein S6 300852  
25 2VQE 6 F 30S RIBOSOMAL PROTEIN S6 300852  
26 2UUB 6 F 30S RIBOSOMAL PROTEIN S6 300852  
27 4DV6 6 F ribosomal protein S6 300852  
28 4JYA 6 F 30S ribosomal protein S6 300852  
29 4DR5 6 F 30S ribosomal protein S6 300852  
30 4KHP 6 F 30S Ribosomal protein S6 300852  
31 4DR2 6 F 30S ribosomal protein S6 300852  
32 4LF9 6 F ribosomal protein S6 300852  
33 4WQY 39 BF, DF 30S ribosomal protein S6 300852  
34 4DUY 6 F ribosomal protein S6 300852  
35 4DV7 6 F ribosomal protein S6 300852  
36 4V9H 19 AF 30S ribosomal protein S6 300852  
37 4V8D 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
38 4DR3 6 F 30S ribosomal protein S6 300852  
39 4V90 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
40 4JI3 6 F RIBOSOMAL PROTEIN S6 300852  
41 4JI6 6 F RIBOSOMAL PROTEIN S6 300852  
42 4JI8 6 F RIBOSOMAL PROTEIN S6 300852  
43 2UXC 6 F RIBOSOMAL PROTEIN S6 300852  
44 4V9R 6 AF, CF 30S Ribosomal Protein S6 274  
45 4B3M 6 F 30S RIBOSOMAL PROTEIN S6 300852  
46 4LF4 6 F ribosomal protein S6 300852  
47 4LF6 6 F ribosomal protein S6 300852  
48 4JI7 6 F RIBOSOMAL PROTEIN S6 300852  
49 4B3T 6 F 30S RIBOSOMAL PROTEIN S6 300852  
50 4V8B 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
51 2VQF 6 F 30S RIBOSOMAL PROTEIN S6 300852  
52 2UUA 6 F 30S RIBOSOMAL PROTEIN S6 300852  
53 4V87 36 BI, CI 30S RIBOSOMAL PROTEIN S6 300852  
54 4V95 6 AF, CF 30S Ribosomal Protein S6 274  
55 1VY7 6 AF, CF 30S ribosomal protein S6 300852  
56 4B3R 6 F 30S RIBOSOMAL PROTEIN S6 300852  
57 4LNT 6 QF, XF 30S ribosomal protein S6 300852  
58 1G1X 3 A, F 30S RIBOSOMAL PROTEIN S6 274  
59 4DR1 6 F 30S ribosomal protein S6 300852  
60 4LFA 6 F ribosomal protein S6 300852  
61 4DV4 6 F ribosomal protein S6 300852  
62 4JI0 6 F ribosomal protein S6 300852  
63 4V9S 6 AF, CF 30S Ribosomal Protein S6 274  
64 4JI2 6 F RIBOSOMAL PROTEIN S6 300852  
65 4JV5 6 F 30S ribosomal protein S6 300852  
66 4DR7 6 F 30S ribosomal protein S6 300852  
67 1J5E 6 F 30S RIBOSOMAL PROTEIN S6 274  
68 4GKK 6 F 30S ribosomal protein S6 300852  
69 4DUZ 6 F ribosomal protein S6 300852  
70 4V8G 6 AF, CF 30S Ribosomal Protein S6 300852  
71 4GKJ 6 F 30S ribosomal protein S6 300852  
72 4DV3 6 F ribosomal protein S6 300852  
73 4DV5 6 F ribosomal protein S6 300852  
74 2UUC 6 F 30S RIBOSOMAL PROTEIN S6 300852  
75 4LFC 6 F ribosomal protein S6 300852  
76 1FJG 7 F 30S RIBOSOMAL PROTEIN S6 274  
77 3T1Y 6 F 30S ribosomal protein S6 300852  
78 4JI4 6 F RIBOSOMAL PROTEIN S6 300852  
79 1VY6 6 AF, CF 30S ribosomal protein S6 300852  
80 1XMQ 8 F 30S Ribosomal Protein S6 274  
81 4DV0 6 F ribosomal protein S6 300852  
82 4V9B 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
83 4V6F 36 BI, CI 30S ribosomal protein S6 300852  
84 4V8F 36 BI, CI 30S RIBOSOMAL PROTEIN S6 300852  
85 4B3S 6 F 30S RIBOSOMAL PROTEIN S6 300852  
86 4DV2 6 F ribosomal protein S6 300852  
87 4DV1 6 F ribosomal protein S6 300852  
88 1N32 8 F 30S RIBOSOMAL PROTEIN S6 274  
89 1I94 6 F 30S RIBOSOMAL PROTEIN S6 274  
90 4V8H 6 AF, CF 30S Ribosomal Protein S6 300852  
91 4JI5 6 F RIBOSOMAL PROTEIN S6 300852  
92 4K0K 6 F 30S ribosomal protein S6 300852  
93 4W2E 39 f 30S ribosomal protein S6 300852  
94 4V8C 36 CI, DI 30S RIBOSOMAL PROTEIN S6 300852  
95 4LF5 6 F ribosomal protein S6 300852  
96 4V9A 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
97 4V5J 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
98 4V7Y 6 AF, CF 30S ribosomal protein S6 300852  
99 4V8E 36 BI, DI 30S RIBOSOMAL PROTEIN S6 300852  
100 4DR4 6 F 30S ribosomal protein S6 300852  
101 3OTO 6 F 30S RIBOSOMAL PROTEIN S6 300852  
102 2UU9 6 F 30S RIBOSOMAL PROTEIN S6 300852  
103 4V8Q 40 BF 30S RIBOSOMAL PROTEIN S6 300852  
104 1HR0 7 F 30S RIBOSOMAL PROTEIN S6 274  
105 4AQY 6 F 30S RIBOSOMAL PROTEIN S6 274  
106 4NXM 6 F ribosomal protein S6 300852  
107 4V5L 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
108 4V7X 6 AF, CF 30S ribosomal protein S6 300852  
109 1IBL 9 F 30S RIBOSOMAL PROTEIN S6 274  
110 4V7W 6 AF, CF 30S ribosomal protein S6 300852  
111 4WUS 7 F 30S ribosomal protein S6 300852  
112 4WT8 6 F 30S ribosomal protein S6 300852  
113 4NXN 6 F ribosomal protein S6 300852  
114 1XNR 8 F 16S Ribosomal protein S6 274  
115 4LT8 6 QF, XF 30S ribosomal protein S6 300852  
116 4V51 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
117 4V7L 6 AF, CF 30S ribosomal protein S6 300852  
118 4V5R 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
119 1HNZ 7 F 30S RIBOSOMAL PROTEIN S6 274  
120 1XNQ 8 F Ribosomal protein S6 274  
121 4V8A 36 CF, DF 30S ribosomal protein S6 300852  
122 4V5K 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
123 4V5Q 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
124 4V7J 5 Af, Bf 30S ribosomal protein S6 300852  
125 4V5C 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
126 4V5E 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
127 4L47 6 QF, XF 30S ribosomal protein S6 300852  
128 4V5P 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
129 4V5D 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
130 4V7Z 6 AF, CF 30S ribosomal protein S6 300852  
131 4V8X 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
132 4V5S 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
133 4V9I 6 AF, CF 30S Ribosomal protein S6 300852  
134 1XMO 8 F 30S ribosomal protein S6 274  
135 3T1H 6 F 30S ribosomal protein S6 300852  
136 2UXD 6 F RIBOSOMAL PROTEIN S6 300852  
137 1N33 8 F 30S RIBOSOMAL PROTEIN S6 274  
138 1IBK 7 F 30S RIBOSOMAL PROTEIN S6 274  
139 4V6G 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
140 4V8N 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
141 4V97 6 AF, CF 30S ribosomal protein S6 300852  
142 1HNW 7 F 30S RIBOSOMAL PROTEIN S6 274  
143 4V7M 6 AF, CF 30S ribosomal protein S6 300852  
144 1IBM 9 F 30S RIBOSOMAL PROTEIN S6 274  
145 4V6A 6 AF, CF 30S ribosomal protein S6 300852  
146 4V84 6 AF, CF 30S ribosomal protein S6 262724  
147 4V7K 5 Af, Bf 30S ribosomal protein S6 300852  
148 1HNX 7 F 30S RIBOSOMAL PROTEIN S6 274  
149 4V9Q 36 BF, DF 30S ribosomal protein S6 262724  
150 4YHH 6 F 30S ribosomal protein S6 262724  
151 4V9N 9 AF, CF 30S ribosomal protein S6 262724  
152 4P70 6 QF, XF 30S ribosomal protein S6 300852  
153 4V8U 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
154 4LSK 6 QF, XF 30S ribosomal protein S6 300852  
155 4P6F 6 QF, XF 30S ribosomal protein S6 300852  
156 4V67 8 AF, CF 30S ribosomal protein S6 274  
157 4V83 6 AF, CF 30S ribosomal protein S6 262724  
158 4V5F 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
159 1VVJ 6 QF, XF 30S ribosomal protein S6 300852  
160 4LFZ 6 QF, XF 30S ribosomal protein S6 300852  
161 2E5L 7 F 30S ribosomal protein S6 274  
162 2HHH 6 F 30S ribosomal protein S6 300852  
163 4OX9 6 F 30S ribosomal protein S6 300852  
164 2UXB 6 F RIBOSOMAL PROTEIN S6 300852  
165 1I96 6 F 30S RIBOSOMAL PROTEIN S6 274  
166 4V9K 5 AF, CF 30S ribosomal protein S6 262724  
167 1N34 7 F 30S RIBOSOMAL PROTEIN S6 274  
168 4V5A 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
169 4V63 8 AF, CF 30S ribosomal protein S6 262724  
170 4L71 6 QF, XF 30S ribosomal protein S6 300852  
171 4KVB 6 F 30S ribosomal protein S6 262724  
172 4XEJ 33 AS06, BS06 30S ribosomal protein S6 262724  
173 4V7P 6 AF, DF 30S ribosomal protein S6 262724  
174 4V8J 6 AF, CF 30S ribosomal protein S6 300852  
175 1N36 6 F 30S RIBOSOMAL PROTEIN S6 274  
176 2ZM6 6 F 30S ribosomal protein S6 274  
177 4LEL 6 QF, XF 30S ribosomal protein S6 300852  
178 2F4V 7 F 30S ribosomal protein S6 274  
179 4V9L 5 AF, CF 30S ribosomal protein S6 262724  
180 1FKA 6 F 30S RIBOSOMAL PROTEIN S6 274  
181 4V5G 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
182 1I97 6 F 30S RIBOSOMAL PROTEIN S6 274  
183 4V9J 5 AF, CF 30S ribosomal protein S6 262724  
184 1I95 6 F 30S RIBOSOMAL PROTEIN S6 274  
185 4V8O 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
186 4V9M 5 AF, CF 30S ribosomal protein S6 262724  
187 4W29 5 AF, CF 30S ribosomal protein S6 262724  
188 4V4Y 8 AI 30S ribosomal protein S6 300852  
189 4V4J 39 g 30S ribosomal protein S6 262724  
190 4V4X 8 AI 30S ribosomal protein S6 300852  
191 4V4Z 9 AI 30S ribosomal protein S6 300852  
192 4V4I 39 g 30S ribosomal protein S6 262724  
193 4V4P 41 BI 30S ribosomal protein S6 300852  
194 4V4R 9 AF 30S ribosomal protein S6 300852  
195 4V4S 9 AF 30S ribosomal protein S6 300852  
196 4V4T 9 AF 30S ribosomal protein S6 300852  
197 4V49 8 AF 30S ribosomal protein S6 562  
198 4V4A 6 AF 30S ribosomal protein S6 562  
199 4V4G 6 AF, CF, EF, GF, IF 30S ribosomal protein S6 562  
200 4V5N 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
201 4V5M 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
202 2KJV 1 A 30S ribosomal protein S6 274  
203 4V68 5 AF 30S ribosomal protein S6 274  
204 1ML5 11 I 30S RIBOSOMAL PROTEIN S6 562  
205 1JGO 9 I 30S RIBOSOMAL PROTEIN S6 274  
206 1JGP 9 I 30S RIBOSOMAL PROTEIN S6 274  
207 1JGQ 9 I 30S RIBOSOMAL PROTEIN S6 274  
208 4V42 9 AI 30S RIBOSOMAL PROTEIN S6 274  
209 1EG0 7 C PROTEIN (S6 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF T.THERMOPHILUS TAKEN FROM PDB ENTRY 1RIS 562  
210 1QD7 5 E S6 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 59
50% 46 282 35
40% 46 282 45
30% 51 333 45
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 276 42
40% 47 332 35
30% 47 332 46
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17961
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 288 34
40% 40 288 44
30% 40 288 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 22
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 281 39
40% 40 281 50
30% 45 333 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 26
95% 35 198 46
90% 35 198 48
70% 35 198 60
50% 35 198 92
40% 35 198 114
30% 35 198 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 20
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 289 33
40% 45 289 43
30% 45 289 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 199 112
30% 40 279 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 138
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 88
50% 32 174 128
40% 32 174 146
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 19
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 279 38
40% 41 279 49
30% 41 279 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 23
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 35 200 88
40% 40 276 53
30% 40 276 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 58
50% 35 198 91
40% 35 198 113
30% 35 198 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 111
40% 35 189 134
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 90
50% 33 214 76
40% 33 214 102
30% 33 214 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 276 40
40% 40 277 51
30% 40 277 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 280 37
40% 41 280 48
30% 41 282 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 17
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 82
40% 42 210 107
30% 48 248 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 18
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 246 53
40% 41 247 70
30% 41 247 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 21
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 282 36
40% 44 284 46
30% 50 337 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 276 41
40% 40 276 54
30% 45 328 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.