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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 31 Members. Sequence cutoff: 90% Cluster size: 207 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1CQM 1 A, B RIBOSOMAL PROTEIN S6 274  
2 1RIS 1 A RIBOSOMAL PROTEIN S6 274  
3 1LOU 1 A RIBOSOMAL PROTEIN S6 274  
4 2BVZ 1 A 30S RIBOSOMAL PROTEIN S6 274  
5 1CQN 1 A, B RIBOSOMAL PROTEIN S6 274  
6 1QJH 1 A RIBOSOMAL PROTEIN S6 274  
7 2BXJ 1 A, B 30S RIBOSOMAL PROTEIN S6 274  
8 4W2F 6 AF, CF 30S Ribosomal Protein S6 300852  
9 4W2G 6 AF, CF 30S Ribosomal Protein S6 300852  
10 4LFB 6 F ribosomal protein S6 300852  
11 1VY4 6 AF, CF 30S ribosomal protein S6 300852  
12 4W2I 6 AF, CF 30S Ribosomal Protein S6 300852  
13 1VY5 6 AF, CF 30S ribosomal protein S6 300852  
14 4WQF 39 BF, DF 30S ribosomal protein S6 300852  
15 4W2H 6 AF, CF 30S Ribosomal Protein S6 300852  
16 4WPO 39 BF, DF 30S ribosomal protein S6 300852  
17 4V8I 6 AF, CF 30S Ribosomal Protein S6 274  
18 4JI1 6 F RIBOSOMAL PROTEIN S6 300852  
19 4DR6 6 F 30S ribosomal protein S6 300852  
20 4LF7 6 F ribosomal protein S6 300852  
21 4LF8 6 F ribosomal protein S6 300852  
22 4WQU 39 BF, DF 30S ribosomal protein S6 300852  
23 2VQE 6 F 30S RIBOSOMAL PROTEIN S6 300852  
24 2UUB 6 F 30S RIBOSOMAL PROTEIN S6 300852  
25 4DV6 6 F ribosomal protein S6 300852  
26 4JYA 6 F 30S ribosomal protein S6 300852  
27 4DR5 6 F 30S ribosomal protein S6 300852  
28 4KHP 6 F 30S Ribosomal protein S6 300852  
29 4DR2 6 F 30S ribosomal protein S6 300852  
30 4LF9 6 F ribosomal protein S6 300852  
31 4WQY 39 BF, DF 30S ribosomal protein S6 300852  
32 4DUY 6 F ribosomal protein S6 300852  
33 4DV7 6 F ribosomal protein S6 300852  
34 4V9H 19 AF 30S ribosomal protein S6 300852  
35 4V8D 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
36 4DR3 6 F 30S ribosomal protein S6 300852  
37 4V90 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
38 4JI3 6 F RIBOSOMAL PROTEIN S6 300852  
39 4JI6 6 F RIBOSOMAL PROTEIN S6 300852  
40 4JI8 6 F RIBOSOMAL PROTEIN S6 300852  
41 2UXC 6 F RIBOSOMAL PROTEIN S6 300852  
42 4V9R 6 AF, CF 30S Ribosomal Protein S6 274  
43 4B3M 6 F 30S RIBOSOMAL PROTEIN S6 300852  
44 4LF4 6 F ribosomal protein S6 300852  
45 4LF6 6 F ribosomal protein S6 300852  
46 4JI7 6 F RIBOSOMAL PROTEIN S6 300852  
47 4B3T 6 F 30S RIBOSOMAL PROTEIN S6 300852  
48 4V8B 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
49 2VQF 6 F 30S RIBOSOMAL PROTEIN S6 300852  
50 2UUA 6 F 30S RIBOSOMAL PROTEIN S6 300852  
51 4V87 36 BI, CI 30S RIBOSOMAL PROTEIN S6 300852  
52 4V95 6 AF, CF 30S Ribosomal Protein S6 274  
53 1VY7 6 AF, CF 30S ribosomal protein S6 300852  
54 4B3R 6 F 30S RIBOSOMAL PROTEIN S6 300852  
55 4LNT 6 QF, XF 30S ribosomal protein S6 300852  
56 1G1X 3 A, F 30S RIBOSOMAL PROTEIN S6 274  
57 4DR1 6 F 30S ribosomal protein S6 300852  
58 4LFA 6 F ribosomal protein S6 300852  
59 4DV4 6 F ribosomal protein S6 300852  
60 4JI0 6 F ribosomal protein S6 300852  
61 4V9S 6 AF, CF 30S Ribosomal Protein S6 274  
62 4JI2 6 F RIBOSOMAL PROTEIN S6 300852  
63 4JV5 6 F 30S ribosomal protein S6 300852  
64 4DR7 6 F 30S ribosomal protein S6 300852  
65 1J5E 6 F 30S RIBOSOMAL PROTEIN S6 274  
66 4GKK 6 F 30S ribosomal protein S6 300852  
67 4DUZ 6 F ribosomal protein S6 300852  
68 4V8G 6 AF, CF 30S Ribosomal Protein S6 300852  
69 4GKJ 6 F 30S ribosomal protein S6 300852  
70 4DV3 6 F ribosomal protein S6 300852  
71 4DV5 6 F ribosomal protein S6 300852  
72 2UUC 6 F 30S RIBOSOMAL PROTEIN S6 300852  
73 4LFC 6 F ribosomal protein S6 300852  
74 1FJG 7 F 30S RIBOSOMAL PROTEIN S6 274  
75 3T1Y 6 F 30S ribosomal protein S6 300852  
76 4JI4 6 F RIBOSOMAL PROTEIN S6 300852  
77 1VY6 6 AF, CF 30S ribosomal protein S6 300852  
78 1XMQ 8 F 30S Ribosomal Protein S6 274  
79 4DV0 6 F ribosomal protein S6 300852  
80 4V9B 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
81 4V6F 36 BI, CI 30S ribosomal protein S6 300852  
82 4V8F 36 BI, CI 30S RIBOSOMAL PROTEIN S6 300852  
83 4B3S 6 F 30S RIBOSOMAL PROTEIN S6 300852  
84 4DV2 6 F ribosomal protein S6 300852  
85 4DV1 6 F ribosomal protein S6 300852  
86 1N32 8 F 30S RIBOSOMAL PROTEIN S6 274  
87 1I94 6 F 30S RIBOSOMAL PROTEIN S6 274  
88 4V8H 6 AF, CF 30S Ribosomal Protein S6 300852  
89 4JI5 6 F RIBOSOMAL PROTEIN S6 300852  
90 4K0K 6 F 30S ribosomal protein S6 300852  
91 4W2E 39 f 30S ribosomal protein S6 300852  
92 4V8C 36 CI, DI 30S RIBOSOMAL PROTEIN S6 300852  
93 4LF5 6 F ribosomal protein S6 300852  
94 4V9A 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
95 4V5J 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
96 4V7Y 6 AF, CF 30S ribosomal protein S6 300852  
97 4V8E 36 BI, DI 30S RIBOSOMAL PROTEIN S6 300852  
98 4DR4 6 F 30S ribosomal protein S6 300852  
99 3OTO 6 F 30S RIBOSOMAL PROTEIN S6 300852  
100 2UU9 6 F 30S RIBOSOMAL PROTEIN S6 300852  
101 4V8Q 40 BF 30S RIBOSOMAL PROTEIN S6 300852  
102 1HR0 7 F 30S RIBOSOMAL PROTEIN S6 274  
103 4AQY 6 F 30S RIBOSOMAL PROTEIN S6 274  
104 4NXM 6 F ribosomal protein S6 300852  
105 4V5L 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
106 4V7X 6 AF, CF 30S ribosomal protein S6 300852  
107 1IBL 9 F 30S RIBOSOMAL PROTEIN S6 274  
108 4V7W 6 AF, CF 30S ribosomal protein S6 300852  
109 4WUS 7 F 30S ribosomal protein S6 300852  
110 4WT8 6 F 30S ribosomal protein S6 300852  
111 4NXN 6 F ribosomal protein S6 300852  
112 1XNR 8 F 16S Ribosomal protein S6 274  
113 4LT8 6 QF, XF 30S ribosomal protein S6 300852  
114 4V51 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
115 4V7L 6 AF, CF 30S ribosomal protein S6 300852  
116 4V5R 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
117 1HNZ 7 F 30S RIBOSOMAL PROTEIN S6 274  
118 1XNQ 8 F Ribosomal protein S6 274  
119 4V8A 36 CF, DF 30S ribosomal protein S6 300852  
120 4V5K 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
121 4V5Q 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
122 4V7J 5 Af, Bf 30S ribosomal protein S6 300852  
123 4V5C 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
124 4V5E 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
125 4L47 6 QF, XF 30S ribosomal protein S6 300852  
126 4V5P 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
127 4V5D 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
128 4V7Z 6 AF, CF 30S ribosomal protein S6 300852  
129 4V8X 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
130 4V5S 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
131 4V9I 6 AF, CF 30S Ribosomal protein S6 300852  
132 1XMO 8 F 30S ribosomal protein S6 274  
133 3T1H 6 F 30S ribosomal protein S6 300852  
134 2UXD 6 F RIBOSOMAL PROTEIN S6 300852  
135 1N33 8 F 30S RIBOSOMAL PROTEIN S6 274  
136 1IBK 7 F 30S RIBOSOMAL PROTEIN S6 274  
137 4V6G 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
138 4V8N 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
139 4V97 6 AF, CF 30S ribosomal protein S6 300852  
140 1HNW 7 F 30S RIBOSOMAL PROTEIN S6 274  
141 4V7M 6 AF, CF 30S ribosomal protein S6 300852  
142 1IBM 9 F 30S RIBOSOMAL PROTEIN S6 274  
143 4V6A 6 AF, CF 30S ribosomal protein S6 300852  
144 4V84 6 AF, CF 30S ribosomal protein S6 262724  
145 4V7K 5 Af, Bf 30S ribosomal protein S6 300852  
146 1HNX 7 F 30S RIBOSOMAL PROTEIN S6 274  
147 4V9Q 36 BF, DF 30S ribosomal protein S6 262724  
148 4V9N 9 AF, CF 30S ribosomal protein S6 262724  
149 4P70 6 QF, XF 30S ribosomal protein S6 300852  
150 4V8U 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
151 4LSK 6 QF, XF 30S ribosomal protein S6 300852  
152 4P6F 6 QF, XF 30S ribosomal protein S6 300852  
153 4V67 8 AF, CF 30S ribosomal protein S6 274  
154 4V83 6 AF, CF 30S ribosomal protein S6 262724  
155 4V5F 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
156 1VVJ 6 QF, XF 30S ribosomal protein S6 300852  
157 4LFZ 6 QF, XF 30S ribosomal protein S6 300852  
158 2E5L 7 F 30S ribosomal protein S6 274  
159 2HHH 6 F 30S ribosomal protein S6 300852  
160 4OX9 6 F 30S ribosomal protein S6 300852  
161 2UXB 6 F RIBOSOMAL PROTEIN S6 300852  
162 1I96 6 F 30S RIBOSOMAL PROTEIN S6 274  
163 4V9K 5 AF, CF 30S ribosomal protein S6 262724  
164 1N34 7 F 30S RIBOSOMAL PROTEIN S6 274  
165 4V5A 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
166 4V63 8 AF, CF 30S ribosomal protein S6 262724  
167 4L71 6 QF, XF 30S ribosomal protein S6 300852  
168 4KVB 6 F 30S ribosomal protein S6 262724  
169 4XEJ 33 AS06, BS06 30S ribosomal protein S6 262724  
170 4V7P 6 AF, DF 30S ribosomal protein S6 262724  
171 4V8J 6 AF, CF 30S ribosomal protein S6 300852  
172 1N36 6 F 30S RIBOSOMAL PROTEIN S6 274  
173 2ZM6 6 F 30S ribosomal protein S6 274  
174 4LEL 6 QF, XF 30S ribosomal protein S6 300852  
175 2F4V 7 F 30S ribosomal protein S6 274  
176 4V9L 5 AF, CF 30S ribosomal protein S6 262724  
177 1FKA 6 F 30S RIBOSOMAL PROTEIN S6 274  
178 4V5G 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
179 1I97 6 F 30S RIBOSOMAL PROTEIN S6 274  
180 4V9J 5 AF, CF 30S ribosomal protein S6 262724  
181 1I95 6 F 30S RIBOSOMAL PROTEIN S6 274  
182 4V8O 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
183 4V9M 5 AF, CF 30S ribosomal protein S6 262724  
184 4W29 5 AF, CF 30S ribosomal protein S6 262724  
185 4V4Y 8 AI 30S ribosomal protein S6 300852  
186 4V4J 39 g 30S ribosomal protein S6 262724  
187 4V4X 8 AI 30S ribosomal protein S6 300852  
188 4V4Z 9 AI 30S ribosomal protein S6 300852  
189 4V4I 39 g 30S ribosomal protein S6 262724  
190 4V4P 41 BI 30S ribosomal protein S6 300852  
191 4V4R 9 AF 30S ribosomal protein S6 300852  
192 4V4S 9 AF 30S ribosomal protein S6 300852  
193 4V4T 9 AF 30S ribosomal protein S6 300852  
194 4V49 8 AF 30S ribosomal protein S6 562  
195 4V4A 6 AF 30S ribosomal protein S6 562  
196 4V4G 6 AF, CF, EF, GF, IF 30S ribosomal protein S6 562  
197 4V5N 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
198 4V5M 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
199 2KJV 1 A 30S ribosomal protein S6 274  
200 4V68 5 AF 30S ribosomal protein S6 274  
201 1ML5 11 I 30S RIBOSOMAL PROTEIN S6 562  
202 1JGO 9 I 30S RIBOSOMAL PROTEIN S6 274  
203 1JGP 9 I 30S RIBOSOMAL PROTEIN S6 274  
204 1JGQ 9 I 30S RIBOSOMAL PROTEIN S6 274  
205 4V42 9 AI 30S RIBOSOMAL PROTEIN S6 274  
206 1EG0 7 C PROTEIN (S6 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF T.THERMOPHILUS TAKEN FROM PDB ENTRY 1RIS 562  
207 1QD7 5 E S6 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 28
95% 33 195 46
90% 33 195 48
70% 33 195 59
50% 43 276 35
40% 43 276 45
30% 48 327 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 26
95% 33 196 42
90% 33 196 44
70% 33 196 55
50% 37 270 42
40% 44 326 35
30% 44 326 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17801
95% 33 203 31
90% 33 203 33
70% 37 282 24
50% 37 282 34
40% 37 282 44
30% 37 282 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 197 23
95% 33 197 38
90% 33 197 40
70% 33 197 52
50% 37 275 39
40% 37 275 52
30% 42 327 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 27
95% 33 195 47
90% 33 195 49
70% 33 195 60
50% 33 195 93
40% 33 195 116
30% 33 195 139
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 199 19
95% 35 204 30
90% 35 204 32
70% 35 204 44
50% 42 283 33
40% 42 283 43
30% 42 283 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 191 29
95% 33 196 44
90% 33 196 46
70% 33 196 57
50% 33 196 90
40% 33 196 114
30% 37 273 77
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 66
95% 33 190 49
90% 33 194 50
70% 33 194 61
50% 33 194 94
40% 33 194 117
30% 33 194 141
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 60
95% 30 172 70
90% 30 172 74
70% 30 172 88
50% 30 172 125
40% 30 172 146
30% 30 172 165
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 47
95% 31 174 69
90% 31 174 73
70% 31 174 87
50% 38 273 38
40% 38 273 50
30% 38 273 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 24
95% 33 197 35
90% 33 197 38
70% 33 197 50
50% 33 197 89
40% 37 270 54
30% 37 270 76
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 54
95% 33 195 45
90% 33 195 47
70% 33 195 58
50% 33 195 92
40% 33 195 115
30% 33 195 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 186 32
95% 33 186 51
90% 33 186 54
70% 33 186 66
50% 33 186 111
40% 33 186 134
30% 33 186 152
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 48
95% 30 171 73
90% 30 171 76
70% 30 171 90
50% 31 210 77
40% 31 210 101
30% 31 210 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 189 30
95% 33 197 36
90% 33 197 39
70% 33 197 51
50% 37 270 40
40% 37 271 53
30% 37 271 75
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 25
95% 33 196 40
90% 33 196 42
70% 33 196 54
50% 38 274 37
40% 38 274 49
30% 38 276 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 201 17
95% 40 207 29
90% 40 207 31
70% 40 207 42
50% 40 207 82
40% 40 207 108
30% 45 244 91
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 18
95% 34 201 33
90% 34 201 35
70% 34 201 46
50% 38 242 55
40% 38 243 71
30% 38 243 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 196 22
95% 34 196 37
90% 34 200 36
70% 34 200 47
50% 40 276 36
40% 41 278 46
30% 47 331 45
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 87
95% 33 196 43
90% 33 196 45
70% 33 196 56
50% 37 270 41
40% 37 270 55
30% 42 322 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.