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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 30 Members. Sequence cutoff: 90% Cluster size: 200 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1CQM 1 A, B RIBOSOMAL PROTEIN S6 274  
2 1RIS 1 A RIBOSOMAL PROTEIN S6 274  
3 1LOU 1 A RIBOSOMAL PROTEIN S6 274  
4 2BVZ 1 A 30S RIBOSOMAL PROTEIN S6 274  
5 1CQN 1 A, B RIBOSOMAL PROTEIN S6 274  
6 1QJH 1 A RIBOSOMAL PROTEIN S6 274  
7 2BXJ 1 A, B 30S RIBOSOMAL PROTEIN S6 274  
8 4W2F 6 AF, CF 30S Ribosomal Protein S6 300852  
9 4W2G 6 AF, CF 30S Ribosomal Protein S6 300852  
10 4LFB 6 F ribosomal protein S6 300852  
11 1VY4 6 AF, CF 30S ribosomal protein S6 300852  
12 4W2I 6 AF, CF 30S Ribosomal Protein S6 300852  
13 1VY5 6 AF, CF 30S ribosomal protein S6 300852  
14 4W2H 6 AF, CF 30S Ribosomal Protein S6 300852  
15 4V8I 6 AF, CF 30S Ribosomal Protein S6 274  
16 4JI1 6 F RIBOSOMAL PROTEIN S6 300852  
17 4DR6 6 F 30S ribosomal protein S6 300852  
18 4LF7 6 F ribosomal protein S6 300852  
19 4LF8 6 F ribosomal protein S6 300852  
20 2VQE 6 F 30S RIBOSOMAL PROTEIN S6 300852  
21 2UUB 6 F 30S RIBOSOMAL PROTEIN S6 300852  
22 4DV6 6 F ribosomal protein S6 300852  
23 4JYA 6 F 30S ribosomal protein S6 300852  
24 4DR5 6 F 30S ribosomal protein S6 300852  
25 4KHP 6 F 30S Ribosomal protein S6 300852  
26 4DR2 6 F 30S ribosomal protein S6 300852  
27 4LF9 6 F ribosomal protein S6 300852  
28 4DUY 6 F ribosomal protein S6 300852  
29 4DV7 6 F ribosomal protein S6 300852  
30 4V9H 19 AF 30S ribosomal protein S6 300852  
31 4V8D 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
32 4DR3 6 F 30S ribosomal protein S6 300852  
33 4V90 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
34 4JI3 6 F RIBOSOMAL PROTEIN S6 300852  
35 4JI6 6 F RIBOSOMAL PROTEIN S6 300852  
36 4JI8 6 F RIBOSOMAL PROTEIN S6 300852  
37 2UXC 6 F RIBOSOMAL PROTEIN S6 300852  
38 4V9R 6 AF, CF 30S Ribosomal Protein S6 274  
39 4B3M 6 F 30S RIBOSOMAL PROTEIN S6 300852  
40 4LF4 6 F ribosomal protein S6 300852  
41 4LF6 6 F ribosomal protein S6 300852  
42 4JI7 6 F RIBOSOMAL PROTEIN S6 300852  
43 4B3T 6 F 30S RIBOSOMAL PROTEIN S6 300852  
44 4V8B 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
45 2VQF 6 F 30S RIBOSOMAL PROTEIN S6 300852  
46 2UUA 6 F 30S RIBOSOMAL PROTEIN S6 300852  
47 4V87 36 BI, CI 30S RIBOSOMAL PROTEIN S6 300852  
48 4V95 6 AF, CF 30S Ribosomal Protein S6 274  
49 1VY7 6 AF, CF 30S ribosomal protein S6 300852  
50 4B3R 6 F 30S RIBOSOMAL PROTEIN S6 300852  
51 4LNT 6 QF, XF 30S ribosomal protein S6 300852  
52 1G1X 3 A, F 30S RIBOSOMAL PROTEIN S6 274  
53 4DR1 6 F 30S ribosomal protein S6 300852  
54 4LFA 6 F ribosomal protein S6 300852  
55 4DV4 6 F ribosomal protein S6 300852  
56 4JI0 6 F ribosomal protein S6 300852  
57 4V9S 6 AF, CF 30S Ribosomal Protein S6 274  
58 4JI2 6 F RIBOSOMAL PROTEIN S6 300852  
59 4JV5 6 F 30S ribosomal protein S6 300852  
60 4DR7 6 F 30S ribosomal protein S6 300852  
61 1J5E 6 F 30S RIBOSOMAL PROTEIN S6 274  
62 4GKK 6 F 30S ribosomal protein S6 300852  
63 4DUZ 6 F ribosomal protein S6 300852  
64 4V8G 6 AF, CF 30S Ribosomal Protein S6 300852  
65 4GKJ 6 F 30S ribosomal protein S6 300852  
66 4DV3 6 F ribosomal protein S6 300852  
67 4DV5 6 F ribosomal protein S6 300852  
68 2UUC 6 F 30S RIBOSOMAL PROTEIN S6 300852  
69 4LFC 6 F ribosomal protein S6 300852  
70 1FJG 7 F 30S RIBOSOMAL PROTEIN S6 274  
71 3T1Y 6 F 30S ribosomal protein S6 300852  
72 4JI4 6 F RIBOSOMAL PROTEIN S6 300852  
73 1VY6 6 AF, CF 30S ribosomal protein S6 300852  
74 1XMQ 8 F 30S Ribosomal Protein S6 274  
75 4DV0 6 F ribosomal protein S6 300852  
76 4V9B 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
77 4V6F 36 BI, CI 30S ribosomal protein S6 300852  
78 4V8F 36 BI, CI 30S RIBOSOMAL PROTEIN S6 300852  
79 4B3S 6 F 30S RIBOSOMAL PROTEIN S6 300852  
80 4DV2 6 F ribosomal protein S6 300852  
81 4DV1 6 F ribosomal protein S6 300852  
82 1N32 8 F 30S RIBOSOMAL PROTEIN S6 274  
83 1I94 6 F 30S RIBOSOMAL PROTEIN S6 274  
84 4V8H 6 AF, CF 30S Ribosomal Protein S6 300852  
85 4JI5 6 F RIBOSOMAL PROTEIN S6 300852  
86 4K0K 6 F 30S ribosomal protein S6 300852  
87 4W2E 39 f 30S ribosomal protein S6 300852  
88 4V8C 36 CI, DI 30S RIBOSOMAL PROTEIN S6 300852  
89 4LF5 6 F ribosomal protein S6 300852  
90 4V9A 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
91 4V5J 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
92 4V7Y 6 AF, CF 30S ribosomal protein S6 300852  
93 4V8E 36 BI, DI 30S RIBOSOMAL PROTEIN S6 300852  
94 4DR4 6 F 30S ribosomal protein S6 300852  
95 3OTO 6 F 30S RIBOSOMAL PROTEIN S6 300852  
96 2UU9 6 F 30S RIBOSOMAL PROTEIN S6 300852  
97 4V8Q 40 BF 30S RIBOSOMAL PROTEIN S6 300852  
98 1HR0 7 F 30S RIBOSOMAL PROTEIN S6 274  
99 4AQY 6 F 30S RIBOSOMAL PROTEIN S6 274  
100 4NXM 6 F ribosomal protein S6 300852  
101 4V5L 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
102 4V7X 6 AF, CF 30S ribosomal protein S6 300852  
103 1IBL 9 F 30S RIBOSOMAL PROTEIN S6 274  
104 4V7W 6 AF, CF 30S ribosomal protein S6 300852  
105 4NXN 6 F ribosomal protein S6 300852  
106 1XNR 8 F 16S Ribosomal protein S6 274  
107 4LT8 6 QF, XF 30S ribosomal protein S6 300852  
108 4V51 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
109 4V7L 6 AF, CF 30S ribosomal protein S6 300852  
110 4V5R 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
111 1HNZ 7 F 30S RIBOSOMAL PROTEIN S6 274  
112 1XNQ 8 F Ribosomal protein S6 274  
113 4V8A 36 CF, DF 30S ribosomal protein S6 300852  
114 4V5K 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
115 4V5Q 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
116 4V7J 5 Af, Bf 30S ribosomal protein S6 300852  
117 4V5C 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
118 4V5E 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
119 4L47 6 QF, XF 30S ribosomal protein S6 300852  
120 4V5P 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
121 4V5D 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
122 4V7Z 6 AF, CF 30S ribosomal protein S6 300852  
123 4V8X 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
124 4V5S 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
125 4V9I 6 AF, CF 30S Ribosomal protein S6 300852  
126 1XMO 8 F 30S ribosomal protein S6 274  
127 3T1H 6 F 30S ribosomal protein S6 300852  
128 2UXD 6 F RIBOSOMAL PROTEIN S6 300852  
129 1N33 8 F 30S RIBOSOMAL PROTEIN S6 274  
130 1IBK 7 F 30S RIBOSOMAL PROTEIN S6 274  
131 4V6G 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
132 4V8N 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
133 4V97 6 AF, CF 30S ribosomal protein S6 300852  
134 1HNW 7 F 30S RIBOSOMAL PROTEIN S6 274  
135 4V7M 6 AF, CF 30S ribosomal protein S6 300852  
136 1IBM 9 F 30S RIBOSOMAL PROTEIN S6 274  
137 4V6A 6 AF, CF 30S ribosomal protein S6 300852  
138 4V84 6 AF, CF 30S ribosomal protein S6 262724  
139 4V7K 5 Af, Bf 30S ribosomal protein S6 300852  
140 1HNX 7 F 30S RIBOSOMAL PROTEIN S6 274  
141 4V9Q 36 BF, DF 30S ribosomal protein S6 262724  
142 4V9N 9 AF, CF 30S ribosomal protein S6 262724  
143 4P70 6 QF, XF 30S ribosomal protein S6 300852  
144 4V8U 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
145 4LSK 6 QF, XF 30S ribosomal protein S6 300852  
146 4P6F 6 QF, XF 30S ribosomal protein S6 300852  
147 4V67 8 AF, CF 30S ribosomal protein S6 274  
148 4V83 6 AF, CF 30S ribosomal protein S6 262724  
149 4V5F 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
150 1VVJ 6 QF, XF 30S ribosomal protein S6 300852  
151 4LFZ 6 QF, XF 30S ribosomal protein S6 300852  
152 2E5L 7 F 30S ribosomal protein S6 274  
153 2HHH 6 F 30S ribosomal protein S6 300852  
154 4OX9 6 F 30S ribosomal protein S6 300852  
155 2UXB 6 F RIBOSOMAL PROTEIN S6 300852  
156 1I96 6 F 30S RIBOSOMAL PROTEIN S6 274  
157 4V9K 5 AF, CF 30S ribosomal protein S6 262724  
158 1N34 7 F 30S RIBOSOMAL PROTEIN S6 274  
159 4V5A 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
160 4V63 8 AF, CF 30S ribosomal protein S6 262724  
161 4L71 6 QF, XF 30S ribosomal protein S6 300852  
162 4KVB 6 F 30S ribosomal protein S6 262724  
163 4V7P 6 AF, DF 30S ribosomal protein S6 262724  
164 4V8J 6 AF, CF 30S ribosomal protein S6 300852  
165 1N36 6 F 30S RIBOSOMAL PROTEIN S6 274  
166 2ZM6 6 F 30S ribosomal protein S6 274  
167 4LEL 6 QF, XF 30S ribosomal protein S6 300852  
168 2F4V 7 F 30S ribosomal protein S6 274  
169 4V9L 5 AF, CF 30S ribosomal protein S6 262724  
170 1FKA 6 F 30S RIBOSOMAL PROTEIN S6 274  
171 4V5G 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
172 1I97 6 F 30S RIBOSOMAL PROTEIN S6 274  
173 4V9J 5 AF, CF 30S ribosomal protein S6 262724  
174 1I95 6 F 30S RIBOSOMAL PROTEIN S6 274  
175 4V8O 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
176 4V9M 5 AF, CF 30S ribosomal protein S6 262724  
177 4W29 5 AF, CF 30S ribosomal protein S6 262724  
178 4V4Y 8 AI 30S ribosomal protein S6 300852  
179 4V4J 39 g 30S ribosomal protein S6 262724  
180 4V4X 8 AI 30S ribosomal protein S6 300852  
181 4V4Z 9 AI 30S ribosomal protein S6 300852  
182 4V4I 39 g 30S ribosomal protein S6 262724  
183 4V4P 41 BI 30S ribosomal protein S6 300852  
184 4V4R 9 AF 30S ribosomal protein S6 300852  
185 4V4S 9 AF 30S ribosomal protein S6 300852  
186 4V4T 9 AF 30S ribosomal protein S6 300852  
187 4V49 8 AF 30S ribosomal protein S6 562  
188 4V4A 6 AF 30S ribosomal protein S6 562  
189 4V4G 6 AF, CF, EF, GF, IF 30S ribosomal protein S6 562  
190 4V5N 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
191 4V5M 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
192 2KJV 1 A 30S ribosomal protein S6 274  
193 4V68 5 AF 30S ribosomal protein S6 274  
194 1ML5 11 I 30S RIBOSOMAL PROTEIN S6 562  
195 1JGO 9 I 30S RIBOSOMAL PROTEIN S6 274  
196 1JGP 9 I 30S RIBOSOMAL PROTEIN S6 274  
197 1JGQ 9 I 30S RIBOSOMAL PROTEIN S6 274  
198 4V42 9 AI 30S RIBOSOMAL PROTEIN S6 274  
199 1EG0 7 C PROTEIN (S6 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF T.THERMOPHILUS TAKEN FROM PDB ENTRY 1RIS 562  
200 1QD7 5 E S6 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 187 28
95% 29 188 47
90% 29 188 50
70% 29 188 60
50% 39 269 34
40% 39 269 45
30% 39 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 26
95% 29 189 43
90% 29 189 46
70% 29 189 56
50% 33 263 41
40% 40 316 35
30% 40 316 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17466
95% 29 196 35
90% 29 196 37
70% 33 275 24
50% 33 275 33
40% 33 275 44
30% 33 275 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 23
95% 29 190 41
90% 29 190 44
70% 29 190 54
50% 33 268 38
40% 33 268 51
30% 38 317 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 188 27
95% 29 188 48
90% 29 188 51
70% 29 188 61
50% 29 188 94
40% 29 188 119
30% 29 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 21
95% 31 197 33
90% 31 197 35
70% 31 197 47
50% 38 276 32
40% 38 276 43
30% 38 276 66
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 29
95% 29 189 45
90% 29 189 48
70% 29 189 58
50% 29 189 92
40% 29 189 117
30% 33 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 104 55
95% 29 183 49
90% 29 187 52
70% 29 187 62
50% 29 187 95
40% 29 187 120
30% 29 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 49
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 139
30% 26 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 266 37
40% 34 266 50
30% 34 266 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 24
95% 29 190 38
90% 29 190 42
70% 29 190 52
50% 29 190 91
40% 33 263 54
30% 33 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 140 42
95% 29 188 46
90% 29 188 49
70% 29 188 59
50% 29 188 93
40% 29 188 118
30% 29 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 179 34
95% 29 179 54
90% 29 179 56
70% 29 179 69
50% 29 179 105
40% 29 179 132
30% 29 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 166 38
95% 26 166 63
90% 26 166 66
70% 26 166 82
50% 27 205 77
40% 27 205 101
30% 27 205 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 182 31
95% 29 190 39
90% 29 190 43
70% 29 190 53
50% 33 263 39
40% 33 264 52
30% 33 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 25
95% 29 189 42
90% 29 189 45
70% 29 189 55
50% 34 267 36
40% 34 267 49
30% 34 269 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 194 19
95% 36 200 29
90% 36 200 30
70% 36 200 45
50% 36 200 86
40% 36 200 108
30% 41 237 93
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 193 20
95% 30 194 36
90% 30 194 38
70% 30 194 50
50% 34 235 56
40% 34 236 73
30% 34 236 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 22
95% 30 189 40
90% 30 193 39
70% 30 193 51
50% 36 269 35
40% 37 271 46
30% 43 321 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 76
95% 29 189 44
90% 29 189 47
70% 29 189 57
50% 33 263 40
40% 33 263 55
30% 38 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.