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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 17 Members. Sequence cutoff: 100% Cluster size: 204 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1RIS 1 A RIBOSOMAL PROTEIN S6 274  
2 4Y4O 37 1f, 2f 30S ribosomal protein S6 300852  
3 4W2F 6 AF, CF 30S Ribosomal Protein S6 300852  
4 4Y4P 37 1f, 2f 30S ribosomal protein S6 300852  
5 4W2G 6 AF, CF 30S Ribosomal Protein S6 300852  
6 4LFB 6 F ribosomal protein S6 300852  
7 1VY4 6 AF, CF 30S ribosomal protein S6 300852  
8 4W2I 6 AF, CF 30S Ribosomal Protein S6 300852  
9 1VY5 6 AF, CF 30S ribosomal protein S6 300852  
10 4WQF 39 BF, DF 30S ribosomal protein S6 300852  
11 4W2H 6 AF, CF 30S Ribosomal Protein S6 300852  
12 4WPO 39 BF, DF 30S ribosomal protein S6 300852  
13 4V8I 6 AF, CF 30S Ribosomal Protein S6 274  
14 4JI1 6 F RIBOSOMAL PROTEIN S6 300852  
15 4DR6 6 F 30S ribosomal protein S6 300852  
16 4LF7 6 F ribosomal protein S6 300852  
17 4LF8 6 F ribosomal protein S6 300852  
18 4WQU 39 BF, DF 30S ribosomal protein S6 300852  
19 2VQE 6 F 30S RIBOSOMAL PROTEIN S6 300852  
20 2UUB 6 F 30S RIBOSOMAL PROTEIN S6 300852  
21 4DV6 6 F ribosomal protein S6 300852  
22 4JYA 6 F 30S ribosomal protein S6 300852  
23 4DR5 6 F 30S ribosomal protein S6 300852  
24 4KHP 6 F 30S Ribosomal protein S6 300852  
25 4DR2 6 F 30S ribosomal protein S6 300852  
26 4LF9 6 F ribosomal protein S6 300852  
27 4WQY 39 BF, DF 30S ribosomal protein S6 300852  
28 4DUY 6 F ribosomal protein S6 300852  
29 4DV7 6 F ribosomal protein S6 300852  
30 4V9H 19 AF 30S ribosomal protein S6 300852  
31 4V8D 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
32 4DR3 6 F 30S ribosomal protein S6 300852  
33 4V90 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
34 4JI3 6 F RIBOSOMAL PROTEIN S6 300852  
35 4JI6 6 F RIBOSOMAL PROTEIN S6 300852  
36 4JI8 6 F RIBOSOMAL PROTEIN S6 300852  
37 2UXC 6 F RIBOSOMAL PROTEIN S6 300852  
38 4V9R 6 AF, CF 30S Ribosomal Protein S6 274  
39 4B3M 6 F 30S RIBOSOMAL PROTEIN S6 300852  
40 4LF4 6 F ribosomal protein S6 300852  
41 4LF6 6 F ribosomal protein S6 300852  
42 4JI7 6 F RIBOSOMAL PROTEIN S6 300852  
43 4B3T 6 F 30S RIBOSOMAL PROTEIN S6 300852  
44 4V8B 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
45 2VQF 6 F 30S RIBOSOMAL PROTEIN S6 300852  
46 2UUA 6 F 30S RIBOSOMAL PROTEIN S6 300852  
47 4V87 36 BI, CI 30S RIBOSOMAL PROTEIN S6 300852  
48 4V95 6 AF, CF 30S Ribosomal Protein S6 274  
49 1VY7 6 AF, CF 30S ribosomal protein S6 300852  
50 4B3R 6 F 30S RIBOSOMAL PROTEIN S6 300852  
51 4LNT 6 QF, XF 30S ribosomal protein S6 300852  
52 1G1X 3 A, F 30S RIBOSOMAL PROTEIN S6 274  
53 4DR1 6 F 30S ribosomal protein S6 300852  
54 4LFA 6 F ribosomal protein S6 300852  
55 4DV4 6 F ribosomal protein S6 300852  
56 4JI0 6 F ribosomal protein S6 300852  
57 4V9S 6 AF, CF 30S Ribosomal Protein S6 274  
58 4JI2 6 F RIBOSOMAL PROTEIN S6 300852  
59 4JV5 6 F 30S ribosomal protein S6 300852  
60 4DR7 6 F 30S ribosomal protein S6 300852  
61 1J5E 6 F 30S RIBOSOMAL PROTEIN S6 274  
62 4GKK 6 F 30S ribosomal protein S6 300852  
63 4DUZ 6 F ribosomal protein S6 300852  
64 4V8G 6 AF, CF 30S Ribosomal Protein S6 300852  
65 4GKJ 6 F 30S ribosomal protein S6 300852  
66 4DV3 6 F ribosomal protein S6 300852  
67 4DV5 6 F ribosomal protein S6 300852  
68 2UUC 6 F 30S RIBOSOMAL PROTEIN S6 300852  
69 4LFC 6 F ribosomal protein S6 300852  
70 1FJG 7 F 30S RIBOSOMAL PROTEIN S6 274  
71 3T1Y 6 F 30S ribosomal protein S6 300852  
72 4JI4 6 F RIBOSOMAL PROTEIN S6 300852  
73 1VY6 6 AF, CF 30S ribosomal protein S6 300852  
74 1XMQ 8 F 30S Ribosomal Protein S6 274  
75 4DV0 6 F ribosomal protein S6 300852  
76 4V9B 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
77 4V6F 36 BI, CI 30S ribosomal protein S6 300852  
78 4V8F 36 BI, CI 30S RIBOSOMAL PROTEIN S6 300852  
79 4B3S 6 F 30S RIBOSOMAL PROTEIN S6 300852  
80 4DV2 6 F ribosomal protein S6 300852  
81 4DV1 6 F ribosomal protein S6 300852  
82 1N32 8 F 30S RIBOSOMAL PROTEIN S6 274  
83 1I94 6 F 30S RIBOSOMAL PROTEIN S6 274  
84 4V8H 6 AF, CF 30S Ribosomal Protein S6 300852  
85 4JI5 6 F RIBOSOMAL PROTEIN S6 300852  
86 4K0K 6 F 30S ribosomal protein S6 300852  
87 4W2E 39 f 30S ribosomal protein S6 300852  
88 4V8C 36 CI, DI 30S RIBOSOMAL PROTEIN S6 300852  
89 4LF5 6 F ribosomal protein S6 300852  
90 4V9A 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
91 4V5J 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
92 4V7Y 6 AF, CF 30S ribosomal protein S6 300852  
93 4V8E 36 BI, DI 30S RIBOSOMAL PROTEIN S6 300852  
94 4DR4 6 F 30S ribosomal protein S6 300852  
95 3OTO 6 F 30S RIBOSOMAL PROTEIN S6 300852  
96 2UU9 6 F 30S RIBOSOMAL PROTEIN S6 300852  
97 4V8Q 40 BF 30S RIBOSOMAL PROTEIN S6 300852  
98 1HR0 7 F 30S RIBOSOMAL PROTEIN S6 274  
99 4AQY 6 F 30S RIBOSOMAL PROTEIN S6 274  
100 4NXM 6 F ribosomal protein S6 300852  
101 4V5L 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
102 4V7X 6 AF, CF 30S ribosomal protein S6 300852  
103 1IBL 9 F 30S RIBOSOMAL PROTEIN S6 274  
104 4V7W 6 AF, CF 30S ribosomal protein S6 300852  
105 4WUS 7 F 30S ribosomal protein S6 300852  
106 4WT8 6 F 30S ribosomal protein S6 300852  
107 4NXN 6 F ribosomal protein S6 300852  
108 1XNR 8 F 16S Ribosomal protein S6 274  
109 4LT8 6 QF, XF 30S ribosomal protein S6 300852  
110 4V51 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
111 4V7L 6 AF, CF 30S ribosomal protein S6 300852  
112 4V5R 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
113 1HNZ 7 F 30S RIBOSOMAL PROTEIN S6 274  
114 1XNQ 8 F Ribosomal protein S6 274  
115 4V8A 36 CF, DF 30S ribosomal protein S6 300852  
116 4V5K 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
117 4V5Q 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
118 4V7J 5 Af, Bf 30S ribosomal protein S6 300852  
119 4V5C 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
120 4V5E 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
121 4L47 6 QF, XF 30S ribosomal protein S6 300852  
122 4V5P 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
123 4V5D 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
124 4V7Z 6 AF, CF 30S ribosomal protein S6 300852  
125 4V8X 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
126 4V5S 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
127 4V9I 6 AF, CF 30S Ribosomal protein S6 300852  
128 1XMO 8 F 30S ribosomal protein S6 274  
129 3T1H 6 F 30S ribosomal protein S6 300852  
130 2UXD 6 F RIBOSOMAL PROTEIN S6 300852  
131 1N33 8 F 30S RIBOSOMAL PROTEIN S6 274  
132 1IBK 7 F 30S RIBOSOMAL PROTEIN S6 274  
133 4V6G 6 AI, CI 30S RIBOSOMAL PROTEIN S6 300852  
134 4V8N 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
135 4V97 6 AF, CF 30S ribosomal protein S6 300852  
136 1HNW 7 F 30S RIBOSOMAL PROTEIN S6 274  
137 4V7M 6 AF, CF 30S ribosomal protein S6 300852  
138 1IBM 9 F 30S RIBOSOMAL PROTEIN S6 274  
139 4V6A 6 AF, CF 30S ribosomal protein S6 300852  
140 4V84 6 AF, CF 30S ribosomal protein S6 262724  
141 4V7K 5 Af, Bf 30S ribosomal protein S6 300852  
142 1HNX 7 F 30S RIBOSOMAL PROTEIN S6 274  
143 4V9Q 36 BF, DF 30S ribosomal protein S6 262724  
144 4YHH 6 F 30S ribosomal protein S6 262724  
145 4V9N 9 AF, CF 30S ribosomal protein S6 262724  
146 4P70 6 QF, XF 30S ribosomal protein S6 300852  
147 4V8U 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
148 4LSK 6 QF, XF 30S ribosomal protein S6 300852  
149 4P6F 6 QF, XF 30S ribosomal protein S6 300852  
150 4V67 8 AF, CF 30S ribosomal protein S6 274  
151 4V83 6 AF, CF 30S ribosomal protein S6 262724  
152 4V5F 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
153 1VVJ 6 QF, XF 30S ribosomal protein S6 300852  
154 4LFZ 6 QF, XF 30S ribosomal protein S6 300852  
155 2E5L 7 F 30S ribosomal protein S6 274  
156 2HHH 6 F 30S ribosomal protein S6 300852  
157 4OX9 6 F 30S ribosomal protein S6 300852  
158 2UXB 6 F RIBOSOMAL PROTEIN S6 300852  
159 1I96 6 F 30S RIBOSOMAL PROTEIN S6 274  
160 4V9K 5 AF, CF 30S ribosomal protein S6 262724  
161 1N34 7 F 30S RIBOSOMAL PROTEIN S6 274  
162 4V5A 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
163 4V63 8 AF, CF 30S ribosomal protein S6 262724  
164 4L71 6 QF, XF 30S ribosomal protein S6 300852  
165 4KVB 6 F 30S ribosomal protein S6 262724  
166 4XEJ 33 AS06, BS06 30S ribosomal protein S6 262724  
167 4V7P 6 AF, DF 30S ribosomal protein S6 262724  
168 4V8J 6 AF, CF 30S ribosomal protein S6 300852  
169 1N36 6 F 30S RIBOSOMAL PROTEIN S6 274  
170 2ZM6 6 F 30S ribosomal protein S6 274  
171 4LEL 6 QF, XF 30S ribosomal protein S6 300852  
172 2F4V 7 F 30S ribosomal protein S6 274  
173 4V9L 5 AF, CF 30S ribosomal protein S6 262724  
174 1FKA 6 F 30S RIBOSOMAL PROTEIN S6 274  
175 4V5G 6 AF, CF 30S RIBOSOMAL PROTEIN S6 300852  
176 1I97 6 F 30S RIBOSOMAL PROTEIN S6 274  
177 4V9J 5 AF, CF 30S ribosomal protein S6 262724  
178 1I95 6 F 30S RIBOSOMAL PROTEIN S6 274  
179 4V8O 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
180 4V9M 5 AF, CF 30S ribosomal protein S6 262724  
181 4W29 5 AF, CF 30S ribosomal protein S6 262724  
182 4V4Y 8 AI 30S ribosomal protein S6 300852  
183 4V4J 39 g 30S ribosomal protein S6 262724  
184 4V4X 8 AI 30S ribosomal protein S6 300852  
185 4V4Z 9 AI 30S ribosomal protein S6 300852  
186 4V4I 39 g 30S ribosomal protein S6 262724  
187 4V4P 41 BI 30S ribosomal protein S6 300852  
188 4V4R 9 AF 30S ribosomal protein S6 300852  
189 4V4S 9 AF 30S ribosomal protein S6 300852  
190 4V4T 9 AF 30S ribosomal protein S6 300852  
191 4V49 8 AF 30S ribosomal protein S6 562  
192 4V4A 6 AF 30S ribosomal protein S6 562  
193 4V4G 6 AF, CF, EF, GF, IF 30S ribosomal protein S6 562  
194 4V5N 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
195 4V5M 6 AF 30S RIBOSOMAL PROTEIN S6 300852  
196 2KJV 1 A 30S ribosomal protein S6 274  
197 4V68 5 AF 30S ribosomal protein S6 274  
198 1ML5 11 I 30S RIBOSOMAL PROTEIN S6 562  
199 1JGO 9 I 30S RIBOSOMAL PROTEIN S6 274  
200 1JGP 9 I 30S RIBOSOMAL PROTEIN S6 274  
201 1JGQ 9 I 30S RIBOSOMAL PROTEIN S6 274  
202 4V42 9 AI 30S RIBOSOMAL PROTEIN S6 274  
203 1EG0 7 C PROTEIN (S6 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF T.THERMOPHILUS TAKEN FROM PDB ENTRY 1RIS 562  
204 1QD7 5 E S6 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 59
50% 46 282 35
40% 46 282 45
30% 51 333 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 276 42
40% 47 333 35
30% 47 333 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17980
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 288 34
40% 40 288 44
30% 40 288 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 22
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 281 39
40% 40 281 50
30% 45 334 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 26
95% 35 198 46
90% 35 198 48
70% 35 198 60
50% 35 198 92
40% 35 198 114
30% 35 198 138
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 20
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 289 33
40% 45 289 43
30% 45 289 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 199 112
30% 40 279 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 89
50% 32 174 130
40% 32 174 148
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 19
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 279 38
40% 41 279 49
30% 41 279 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 23
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 35 200 88
40% 40 276 53
30% 40 276 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 58
50% 35 198 91
40% 35 198 113
30% 35 198 137
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 112
40% 35 189 135
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 91
50% 33 214 76
40% 33 214 102
30% 33 214 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 276 40
40% 40 277 51
30% 40 277 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 280 37
40% 41 280 48
30% 41 282 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 17
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 82
40% 42 210 107
30% 48 248 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 18
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 246 54
40% 41 247 71
30% 41 247 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 21
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 282 36
40% 44 284 46
30% 50 338 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 276 41
40% 40 276 54
30% 45 329 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.