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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 54 Members. Sequence cutoff: 70% Cluster size: 196 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 5 AE, CE 30S Ribosomal Protein S5 300852  
2 4W2G 5 AE, CE 30S Ribosomal Protein S5 300852  
3 4LFB 5 E ribosomal protein S5 300852  
4 1VY4 5 AE, CE 30S ribosomal protein S5 300852  
5 4W2I 5 AE, CE 30S Ribosomal Protein S5 300852  
6 1VY5 5 AE, CE 30S ribosomal protein S5 300852  
7 4WQF 38 BE, DE 30S ribosomal protein S5 300852  
8 4W2H 5 AE, CE 30S Ribosomal Protein S5 300852  
9 4WPO 38 BE, DE 30S ribosomal protein S5 300852  
10 4V8I 5 AE, CE 30S Ribosomal Protein S5 274  
11 4JI1 5 E RIBOSOMAL PROTEIN S5 300852  
12 4DR6 5 E 30S ribosomal protein S5 300852  
13 4LF7 5 E ribosomal protein S5 300852  
14 4LF8 5 E ribosomal protein S5 300852  
15 4WQU 38 BE, DE 30S ribosomal protein S5 300852  
16 2VQE 5 E 30S RIBOSOMAL PROTEIN S5 300852  
17 2UUB 5 E 30S RIBOSOMAL PROTEIN S5 300852  
18 4DV6 5 E ribosomal protein S5 300852  
19 4JYA 5 E 30S ribosomal protein S5 300852  
20 4DR5 5 E 30S ribosomal protein S5 300852  
21 4KHP 5 E 30S Ribosomal protein S5 300852  
22 4DR2 5 E 30S ribosomal protein S5 300852  
23 4LF9 5 E ribosomal protein S5 300852  
24 4WQY 38 BE, DE 30S ribosomal protein S5 300852  
25 4DUY 5 E ribosomal protein S5 300852  
26 4DV7 5 E ribosomal protein S5 300852  
27 4V9H 18 AE 30S ribosomal protein S5 300852  
28 4V8D 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
29 4DR3 5 E 30S ribosomal protein S5 300852  
30 4V90 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
31 4JI3 5 E RIBOSOMAL PROTEIN S5 300852  
32 4JI6 5 E RIBOSOMAL PROTEIN S5 300852  
33 4JI8 5 E RIBOSOMAL PROTEIN S5 300852  
34 2UXC 5 E RIBOSOMAL PROTEIN S5 300852  
35 4V9R 5 AE, CE 30S Ribosomal Protein S5 274  
36 4B3M 5 E 30S RIBOSOMAL PROTEIN S5 300852  
37 4LF4 5 E ribosomal protein S5 300852  
38 4LF6 5 E ribosomal protein S5 300852  
39 4JI7 5 E RIBOSOMAL PROTEIN S5 300852  
40 4B3T 5 E 30S RIBOSOMAL PROTEIN S5 300852  
41 4V8B 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
42 2VQF 5 E 30S RIBOSOMAL PROTEIN S5 300852  
43 2UUA 5 E 30S RIBOSOMAL PROTEIN S5 300852  
44 4V87 35 BH, CH 30S RIBOSOMAL PROTEIN S5 300852  
45 4V95 5 AE, CE 30S Ribosomal Protein S5 274  
46 1VY7 5 AE, CE 30S ribosomal protein S5 300852  
47 4B3R 5 E 30S RIBOSOMAL PROTEIN S5 300852  
48 4LNT 5 QE, XE 30S ribosomal protein S5 300852  
49 4DR1 5 E 30S ribosomal protein S5 300852  
50 4LFA 5 E ribosomal protein S5 300852  
51 4DV4 5 E ribosomal protein S5 300852  
52 4JI0 5 E ribosomal protein S5 300852  
53 4V9S 5 AE, CE 30S Ribosomal Protein S5 274  
54 4JI2 5 E RIBOSOMAL PROTEIN S5 300852  
55 4JV5 5 E 30S ribosomal protein S5 300852  
56 4DR7 5 E 30S ribosomal protein S5 300852  
57 1J5E 5 E 30S RIBOSOMAL PROTEIN S5 274  
58 4GKK 5 E 30S ribosomal protein S5 300852  
59 4DUZ 5 E ribosomal protein S5 300852  
60 4V8G 5 AE, CE 30S Ribosomal Protein S5 300852  
61 4GKJ 5 E 30S ribosomal protein S5 300852  
62 4DV3 5 E ribosomal protein S5 300852  
63 4DV5 5 E ribosomal protein S5 300852  
64 2UUC 5 E 30S RIBOSOMAL PROTEIN S5 300852  
65 4LFC 5 E ribosomal protein S5 300852  
66 1FJG 6 E 30S RIBOSOMAL PROTEIN S5 274  
67 3T1Y 5 E 30S ribosomal protein S5 300852  
68 4JI4 5 E RIBOSOMAL PROTEIN S5 300852  
69 1VY6 5 AE, CE 30S ribosomal protein S5 300852  
70 1XMQ 7 E 30S Ribosomal Protein S5 274  
71 4DV0 5 E ribosomal protein S5 300852  
72 4V9B 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
73 4V6F 35 BH, CH 30S ribosomal protein S5 300852  
74 4V8F 35 BH, CH 30S RIBOSOMAL PROTEIN S5 300852  
75 4B3S 5 E 30S RIBOSOMAL PROTEIN S5 300852  
76 4DV2 5 E ribosomal protein S5 300852  
77 4DV1 5 E ribosomal protein S5 300852  
78 1N32 7 E 30S RIBOSOMAL PROTEIN S5 274  
79 1I94 5 E 30S RIBOSOMAL PROTEIN S5 274  
80 4V8H 5 AE, CE 30S Ribosomal Protein S5 300852  
81 4JI5 5 E RIBOSOMAL PROTEIN S5 300852  
82 4K0K 5 E 30S ribosomal protein S5 300852  
83 4W2E 38 e 30S ribosomal protein S5 300852  
84 4V8C 35 CH, DH 30S RIBOSOMAL PROTEIN S5 300852  
85 4LF5 5 E ribosomal protein S5 300852  
86 4V9A 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
87 4V5J 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
88 4V7Y 5 AE, CE 30S ribosomal protein S5 300852  
89 4V8E 35 BH, DH 30S RIBOSOMAL PROTEIN S5 300852  
90 4DR4 5 E 30S ribosomal protein S5 300852  
91 3OTO 5 E 30S RIBOSOMAL PROTEIN S5 300852  
92 2UU9 5 E 30S RIBOSOMAL PROTEIN S5 300852  
93 4V8Q 39 BE 30S RIBOSOMAL PROTEIN S5 300852  
94 1HR0 6 E 30S RIBOSOMAL PROTEIN S5 274  
95 4AQY 5 E 30S RIBOSOMAL PROTEIN S5 274  
96 4NXM 5 E ribosomal protein S5 300852  
97 4V5L 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
98 4V7X 5 AE, CE 30S ribosomal protein S5 300852  
99 1IBL 8 E 30S RIBOSOMAL PROTEIN S5 274  
100 4V7W 5 AE, CE 30S ribosomal protein S5 300852  
101 4WUS 6 E 30S ribosomal protein S5 300852  
102 4WT8 5 E 30S ribosomal protein S5 300852  
103 4NXN 5 E ribosomal protein S5 300852  
104 1XNR 7 E 16S Ribosomal protein S5 274  
105 4LT8 5 QE, XE 30S ribosomal protein S5 300852  
106 4V51 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
107 4V7L 5 AE, CE 30S ribosomal protein S5 300852  
108 4V5R 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
109 1HNZ 6 E 30S RIBOSOMAL PROTEIN S5 274  
110 1XNQ 7 E Ribosomal protein S5 274  
111 4V8A 35 CE, DE 30S ribosomal protein S5 300852  
112 4V5K 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
113 4V5Q 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
114 4V7J 4 Ae, Be 30S ribosomal protein S5 300852  
115 4V5C 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
116 4V5E 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
117 4L47 5 QE, XE 30S ribosomal protein S5 300852  
118 4V5P 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
119 4V5D 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
120 4V7Z 5 AE, CE 30S ribosomal protein S5 300852  
121 4V8X 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
122 4V5S 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
123 4V9I 5 AE, CE 30S Ribosomal protein S5 300852  
124 1XMO 7 E 30S ribosomal protein S5 274  
125 3T1H 5 E 30S ribosomal protein S5 300852  
126 2UXD 5 E RIBOSOMAL PROTEIN S5 300852  
127 1N33 7 E 30S RIBOSOMAL PROTEIN S5 274  
128 1IBK 6 E 30S RIBOSOMAL PROTEIN S5 274  
129 4V6G 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
130 4V8N 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
131 4V97 5 AE, CE 30S ribosomal protein S5 300852  
132 1HNW 6 E 30S RIBOSOMAL PROTEIN S5 274  
133 4V7M 5 AE, CE 30S ribosomal protein S5 300852  
134 1IBM 8 E 30S RIBOSOMAL PROTEIN S5 274  
135 4V6A 5 AE, CE 30S ribosomal protein S5 300852  
136 4V84 5 AE, CE 30S ribosomal protein S5 262724  
137 4V7K 4 Ae, Be 30S ribosomal protein S5 300852  
138 1HNX 6 E 30S RIBOSOMAL PROTEIN S5 274  
139 4V9Q 35 BE, DE 30S ribosomal protein S5 262724  
140 4V9N 8 AE, CE 30S ribosomal protein S5 262724  
141 4P70 5 QE, XE 30S ribosomal protein S5 300852  
142 4V8U 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
143 4LSK 5 QE, XE 30S ribosomal protein S5 300852  
144 4P6F 5 QE, XE 30S ribosomal protein S5 300852  
145 4V67 7 AE, CE 30S ribosomal protein S5 274  
146 4V83 5 AE, CE 30S ribosomal protein S5 262724  
147 4V5F 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
148 1VVJ 5 QE, XE 30S ribosomal protein S5 300852  
149 4LFZ 5 QE, XE 30S ribosomal protein S5 300852  
150 2E5L 6 E 30S ribosomal protein S5 274  
151 2HHH 5 E 30S ribosomal protein S5 300852  
152 4OX9 5 E 30S ribosomal protein S5 300852  
153 2UXB 5 E RIBOSOMAL PROTEIN S5 300852  
154 1I96 5 E 30S RIBOSOMAL PROTEIN S5 274  
155 4V9K 4 AE, CE 30S ribosomal protein S5 262724  
156 1N34 6 E 30S RIBOSOMAL PROTEIN S5 274  
157 4V5A 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
158 4V63 7 AE, CE 30S ribosomal protein S5 262724  
159 4L71 5 QE, XE 30S ribosomal protein S5 300852  
160 4KVB 5 E 30S ribosomal protein S5 262724  
161 4XEJ 32 AS05, BS05 30S ribosomal protein S5 262724  
162 4V7P 5 AE, DE 30S ribosomal protein S5 262724  
163 4V8J 5 AE, CE 30S ribosomal protein S5 300852  
164 1N36 5 E 30S RIBOSOMAL PROTEIN S5 274  
165 2ZM6 5 E 30S ribosomal protein S5 274  
166 4LEL 5 QE, XE 30S ribosomal protein S5 300852  
167 2F4V 6 E 30S ribosomal protein S5 274  
168 4V9L 4 AE, CE 30S ribosomal protein S5 262724  
169 1FKA 5 E 30S RIBOSOMAL PROTEIN S5 274  
170 4V5G 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
171 1I97 5 E 30S RIBOSOMAL PROTEIN S5 274  
172 4V9J 4 AE, CE 30S ribosomal protein S5 262724  
173 1I95 5 E 30S RIBOSOMAL PROTEIN S5 274  
174 4V8O 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
175 4V9M 4 AE, CE 30S ribosomal protein S5 262724  
176 4W29 4 AE, CE 30S ribosomal protein S5 262724  
177 4V4Y 7 AH 30S ribosomal protein S5 300852  
178 4V4J 38 f 30S ribosomal protein S5 262724  
179 4V4X 7 AH 30S ribosomal protein S5 300852  
180 4V4Z 8 AH 30S ribosomal protein S5 300852  
181 4V4I 38 f 30S ribosomal protein S5 262724  
182 4V4P 40 BH 30S ribosomal protein S5 300852  
183 4V4R 8 AE 30S ribosomal protein S5 300852  
184 4V4S 8 AE 30S ribosomal protein S5 300852  
185 4V4T 8 AE 30S ribosomal protein S5 300852  
186 4V49 7 AE 30S ribosomal protein S5 562  
187 4V4A 5 AE 30S ribosomal protein S5 562  
188 4V4G 5 AE, CE, EE, GE, IE 30S ribosomal protein S5 562  
189 4V5N 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
190 4V5M 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
191 4V68 4 AE 30S ribosomal protein S5 274  
192 1ML5 10 H 30S RIBOSOMAL PROTEIN S5 562  
193 1JGO 8 H 30S RIBOSOMAL PROTEIN S5 274  
194 1JGP 8 H 30S RIBOSOMAL PROTEIN S5 274  
195 1JGQ 8 H 30S RIBOSOMAL PROTEIN S5 274  
196 4V42 8 AH 30S RIBOSOMAL PROTEIN S5 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 28
95% 33 195 46
90% 33 195 48
70% 33 195 59
50% 43 276 35
40% 43 276 45
30% 48 326 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 26
95% 33 196 42
90% 33 196 44
70% 33 196 55
50% 37 270 42
40% 44 325 36
30% 44 325 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17765
95% 33 203 31
90% 33 203 33
70% 37 282 24
50% 37 282 34
40% 37 282 44
30% 37 282 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 197 23
95% 33 197 38
90% 33 197 40
70% 33 197 52
50% 37 275 39
40% 37 275 51
30% 42 326 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 27
95% 33 195 47
90% 33 195 49
70% 33 195 60
50% 33 195 92
40% 33 195 116
30% 33 195 139
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 199 19
95% 35 204 30
90% 35 204 32
70% 35 204 44
50% 42 283 33
40% 42 283 43
30% 42 283 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 191 29
95% 33 196 44
90% 33 196 46
70% 33 196 57
50% 33 196 89
40% 33 196 114
30% 37 273 77
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 66
95% 33 190 49
90% 33 194 50
70% 33 194 61
50% 33 194 93
40% 33 194 117
30% 33 194 141
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 59
95% 30 172 70
90% 30 172 74
70% 30 172 88
50% 30 172 125
40% 30 172 146
30% 30 172 165
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 47
95% 31 174 69
90% 31 174 73
70% 31 174 87
50% 38 273 38
40% 38 273 49
30% 38 273 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 24
95% 33 197 35
90% 33 197 38
70% 33 197 50
50% 33 197 88
40% 37 270 53
30% 37 270 76
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 54
95% 33 195 45
90% 33 195 47
70% 33 195 58
50% 33 195 91
40% 33 195 115
30% 33 195 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 186 32
95% 33 186 51
90% 33 186 54
70% 33 186 66
50% 33 186 110
40% 33 186 133
30% 33 186 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 48
95% 30 171 72
90% 30 171 76
70% 30 171 90
50% 31 210 76
40% 31 210 101
30% 31 210 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 189 30
95% 33 197 36
90% 33 197 39
70% 33 197 51
50% 37 270 40
40% 37 271 52
30% 37 271 75
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 25
95% 33 196 40
90% 33 196 42
70% 33 196 54
50% 38 274 37
40% 38 274 48
30% 38 276 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 201 17
95% 40 207 29
90% 40 207 31
70% 40 207 42
50% 40 207 81
40% 40 207 108
30% 45 244 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 18
95% 34 201 33
90% 34 201 35
70% 34 201 46
50% 38 242 55
40% 38 243 71
30% 38 243 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 196 22
95% 34 196 37
90% 34 200 36
70% 34 200 47
50% 40 276 36
40% 41 278 46
30% 47 330 45
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 86
95% 33 196 43
90% 33 196 45
70% 33 196 56
50% 37 270 41
40% 37 270 54
30% 42 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.