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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 51 Members. Sequence cutoff: 70% Cluster size: 206 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 36 1e, 2e 30S ribosomal protein S5 300852  
2 4W2F 5 AE, CE 30S Ribosomal Protein S5 300852  
3 4Y4P 36 1e, 2e 30S ribosomal protein S5 300852  
4 4W2G 5 AE, CE 30S Ribosomal Protein S5 300852  
5 4LFB 5 E ribosomal protein S5 300852  
6 1VY4 5 AE, CE 30S ribosomal protein S5 300852  
7 4W2I 5 AE, CE 30S Ribosomal Protein S5 300852  
8 1VY5 5 AE, CE 30S ribosomal protein S5 300852  
9 4WQF 38 BE, DE 30S ribosomal protein S5 300852  
10 4W2H 5 AE, CE 30S Ribosomal Protein S5 300852  
11 4WPO 38 BE, DE 30S ribosomal protein S5 300852  
12 4V8I 5 AE, CE 30S Ribosomal Protein S5 274  
13 4JI1 5 E RIBOSOMAL PROTEIN S5 300852  
14 4DR6 5 E 30S ribosomal protein S5 300852  
15 4LF7 5 E ribosomal protein S5 300852  
16 4LF8 5 E ribosomal protein S5 300852  
17 4WQU 38 BE, DE 30S ribosomal protein S5 300852  
18 2VQE 5 E 30S RIBOSOMAL PROTEIN S5 300852  
19 4Z8C 36 1e, 2e 30S ribosomal protein S5 300852  
20 2UUB 5 E 30S RIBOSOMAL PROTEIN S5 300852  
21 4DV6 5 E ribosomal protein S5 300852  
22 4JYA 5 E 30S ribosomal protein S5 300852  
23 4DR5 5 E 30S ribosomal protein S5 300852  
24 4KHP 5 E 30S Ribosomal protein S5 300852  
25 4DR2 5 E 30S ribosomal protein S5 300852  
26 4LF9 5 E ribosomal protein S5 300852  
27 4WQY 38 BE, DE 30S ribosomal protein S5 300852  
28 4DUY 5 E ribosomal protein S5 300852  
29 4DV7 5 E ribosomal protein S5 300852  
30 4V9H 18 AE 30S ribosomal protein S5 300852  
31 4V8D 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
32 4DR3 5 E 30S ribosomal protein S5 300852  
33 4V90 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
34 4JI3 5 E RIBOSOMAL PROTEIN S5 300852  
35 4JI6 5 E RIBOSOMAL PROTEIN S5 300852  
36 4JI8 5 E RIBOSOMAL PROTEIN S5 300852  
37 2UXC 5 E RIBOSOMAL PROTEIN S5 300852  
38 4V9R 5 AE, CE 30S Ribosomal Protein S5 274  
39 4B3M 5 E 30S RIBOSOMAL PROTEIN S5 300852  
40 4LF4 5 E ribosomal protein S5 300852  
41 4LF6 5 E ribosomal protein S5 300852  
42 4JI7 5 E RIBOSOMAL PROTEIN S5 300852  
43 4B3T 5 E 30S RIBOSOMAL PROTEIN S5 300852  
44 4V8B 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
45 2VQF 5 E 30S RIBOSOMAL PROTEIN S5 300852  
46 2UUA 5 E 30S RIBOSOMAL PROTEIN S5 300852  
47 4V87 35 BH, CH 30S RIBOSOMAL PROTEIN S5 300852  
48 4V95 5 AE, CE 30S Ribosomal Protein S5 274  
49 1VY7 5 AE, CE 30S ribosomal protein S5 300852  
50 4B3R 5 E 30S RIBOSOMAL PROTEIN S5 300852  
51 4LNT 5 QE, XE 30S ribosomal protein S5 300852  
52 4DR1 5 E 30S ribosomal protein S5 300852  
53 4LFA 5 E ribosomal protein S5 300852  
54 4DV4 5 E ribosomal protein S5 300852  
55 4JI0 5 E ribosomal protein S5 300852  
56 4V9S 5 AE, CE 30S Ribosomal Protein S5 274  
57 4JI2 5 E RIBOSOMAL PROTEIN S5 300852  
58 4JV5 5 E 30S ribosomal protein S5 300852  
59 4DR7 5 E 30S ribosomal protein S5 300852  
60 1J5E 5 E 30S RIBOSOMAL PROTEIN S5 274  
61 4GKK 5 E 30S ribosomal protein S5 300852  
62 4DUZ 5 E ribosomal protein S5 300852  
63 4V8G 5 AE, CE 30S Ribosomal Protein S5 300852  
64 4GKJ 5 E 30S ribosomal protein S5 300852  
65 4DV3 5 E ribosomal protein S5 300852  
66 4DV5 5 E ribosomal protein S5 300852  
67 2UUC 5 E 30S RIBOSOMAL PROTEIN S5 300852  
68 4LFC 5 E ribosomal protein S5 300852  
69 1FJG 6 E 30S RIBOSOMAL PROTEIN S5 274  
70 3T1Y 5 E 30S ribosomal protein S5 300852  
71 4JI4 5 E RIBOSOMAL PROTEIN S5 300852  
72 1VY6 5 AE, CE 30S ribosomal protein S5 300852  
73 1XMQ 7 E 30S Ribosomal Protein S5 274  
74 4DV0 5 E ribosomal protein S5 300852  
75 4V9B 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
76 4V6F 35 BH, CH 30S ribosomal protein S5 300852  
77 4V8F 35 BH, CH 30S RIBOSOMAL PROTEIN S5 300852  
78 4B3S 5 E 30S RIBOSOMAL PROTEIN S5 300852  
79 4DV2 5 E ribosomal protein S5 300852  
80 4DV1 5 E ribosomal protein S5 300852  
81 1N32 7 E 30S RIBOSOMAL PROTEIN S5 274  
82 1I94 5 E 30S RIBOSOMAL PROTEIN S5 274  
83 4V8H 5 AE, CE 30S Ribosomal Protein S5 300852  
84 4JI5 5 E RIBOSOMAL PROTEIN S5 300852  
85 4K0K 5 E 30S ribosomal protein S5 300852  
86 4W2E 38 e 30S ribosomal protein S5 300852  
87 4V8C 35 CH, DH 30S RIBOSOMAL PROTEIN S5 300852  
88 4LF5 5 E ribosomal protein S5 300852  
89 4V9A 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
90 4V5J 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
91 4V7Y 5 AE, CE 30S ribosomal protein S5 300852  
92 4V8E 35 BH, DH 30S RIBOSOMAL PROTEIN S5 300852  
93 4DR4 5 E 30S ribosomal protein S5 300852  
94 3OTO 5 E 30S RIBOSOMAL PROTEIN S5 300852  
95 2UU9 5 E 30S RIBOSOMAL PROTEIN S5 300852  
96 4V8Q 39 BE 30S RIBOSOMAL PROTEIN S5 300852  
97 1HR0 6 E 30S RIBOSOMAL PROTEIN S5 274  
98 4AQY 5 E 30S RIBOSOMAL PROTEIN S5 274  
99 4NXM 5 E ribosomal protein S5 300852  
100 4V5L 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
101 4V7X 5 AE, CE 30S ribosomal protein S5 300852  
102 4ZER 36 1e, 2e 30S ribosomal protein S5 300852  
103 1IBL 8 E 30S RIBOSOMAL PROTEIN S5 274  
104 4V7W 5 AE, CE 30S ribosomal protein S5 300852  
105 4WUS 6 E 30S ribosomal protein S5 300852  
106 4WT8 5 E 30S ribosomal protein S5 300852  
107 4NXN 5 E ribosomal protein S5 300852  
108 1XNR 7 E 16S Ribosomal protein S5 274  
109 4LT8 5 QE, XE 30S ribosomal protein S5 300852  
110 4V51 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
111 4V7L 5 AE, CE 30S ribosomal protein S5 300852  
112 4V5R 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
113 1HNZ 6 E 30S RIBOSOMAL PROTEIN S5 274  
114 1XNQ 7 E Ribosomal protein S5 274  
115 4V8A 35 CE, DE 30S ribosomal protein S5 300852  
116 4V5K 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
117 4V5Q 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
118 4V7J 4 Ae, Be 30S ribosomal protein S5 300852  
119 4V5C 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
120 4V5E 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
121 4L47 5 QE, XE 30S ribosomal protein S5 300852  
122 4V5P 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
123 4V5D 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
124 4V7Z 5 AE, CE 30S ribosomal protein S5 300852  
125 4V8X 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
126 4V5S 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
127 4V9I 5 AE, CE 30S Ribosomal protein S5 300852  
128 1XMO 7 E 30S ribosomal protein S5 274  
129 3T1H 5 E 30S ribosomal protein S5 300852  
130 2UXD 5 E RIBOSOMAL PROTEIN S5 300852  
131 1N33 7 E 30S RIBOSOMAL PROTEIN S5 274  
132 1IBK 6 E 30S RIBOSOMAL PROTEIN S5 274  
133 4V6G 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
134 4V8N 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
135 4V97 5 AE, CE 30S ribosomal protein S5 300852  
136 1HNW 6 E 30S RIBOSOMAL PROTEIN S5 274  
137 4V7M 5 AE, CE 30S ribosomal protein S5 300852  
138 4TUD 5 QE, XE 30S ribosomal protein S5 300852  
139 1IBM 8 E 30S RIBOSOMAL PROTEIN S5 274  
140 4V6A 5 AE, CE 30S ribosomal protein S5 300852  
141 4TUE 5 QE, XE 30S ribosomal protein S5 300852  
142 4TUA 5 QE, XE 30S ribosomal protein S5 300852  
143 4V84 5 AE, CE 30S ribosomal protein S5 262724  
144 4V7K 4 Ae, Be 30S ribosomal protein S5 300852  
145 1HNX 6 E 30S RIBOSOMAL PROTEIN S5 274  
146 4V9Q 35 BE, DE 30S ribosomal protein S5 262724  
147 4TUC 5 QE, XE 30S ribosomal protein S5 300852  
148 4YHH 5 E 30S ribosomal protein S5 262724  
149 4TUB 5 QE, XE 30S ribosomal protein S5 300852  
150 4V9N 8 AE, CE 30S ribosomal protein S5 262724  
151 4P70 5 QE, XE 30S ribosomal protein S5 300852  
152 4V8U 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
153 4LSK 5 QE, XE 30S ribosomal protein S5 300852  
154 4P6F 5 QE, XE 30S ribosomal protein S5 300852  
155 4V67 7 AE, CE 30S ribosomal protein S5 274  
156 4V83 5 AE, CE 30S ribosomal protein S5 262724  
157 4V5F 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
158 1VVJ 5 QE, XE 30S ribosomal protein S5 300852  
159 4LFZ 5 QE, XE 30S ribosomal protein S5 300852  
160 2E5L 6 E 30S ribosomal protein S5 274  
161 2HHH 5 E 30S ribosomal protein S5 300852  
162 4OX9 5 E 30S ribosomal protein S5 300852  
163 2UXB 5 E RIBOSOMAL PROTEIN S5 300852  
164 1I96 5 E 30S RIBOSOMAL PROTEIN S5 274  
165 4V9K 4 AE, CE 30S ribosomal protein S5 262724  
166 1N34 6 E 30S RIBOSOMAL PROTEIN S5 274  
167 4V5A 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
168 4V63 7 AE, CE 30S ribosomal protein S5 262724  
169 4L71 5 QE, XE 30S ribosomal protein S5 300852  
170 4KVB 5 E 30S ribosomal protein S5 262724  
171 4XEJ 32 AS05, BS05 30S ribosomal protein S5 262724  
172 4V7P 5 AE, DE 30S ribosomal protein S5 262724  
173 4V8J 5 AE, CE 30S ribosomal protein S5 300852  
174 1N36 5 E 30S RIBOSOMAL PROTEIN S5 274  
175 2ZM6 5 E 30S ribosomal protein S5 274  
176 4LEL 5 QE, XE 30S ribosomal protein S5 300852  
177 2F4V 6 E 30S ribosomal protein S5 274  
178 4V9L 4 AE, CE 30S ribosomal protein S5 262724  
179 1FKA 5 E 30S RIBOSOMAL PROTEIN S5 274  
180 4V5G 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
181 1I97 5 E 30S RIBOSOMAL PROTEIN S5 274  
182 4V9J 4 AE, CE 30S ribosomal protein S5 262724  
183 1I95 5 E 30S RIBOSOMAL PROTEIN S5 274  
184 4V8O 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
185 4V9M 4 AE, CE 30S ribosomal protein S5 262724  
186 4W29 4 AE, CE 30S ribosomal protein S5 262724  
187 4V4Y 7 AH 30S ribosomal protein S5 300852  
188 4V4J 38 f 30S ribosomal protein S5 262724  
189 4V4X 7 AH 30S ribosomal protein S5 300852  
190 4V4Z 8 AH 30S ribosomal protein S5 300852  
191 4V4I 38 f 30S ribosomal protein S5 262724  
192 4V4P 40 BH 30S ribosomal protein S5 300852  
193 4V4R 8 AE 30S ribosomal protein S5 300852  
194 4V4S 8 AE 30S ribosomal protein S5 300852  
195 4V4T 8 AE 30S ribosomal protein S5 300852  
196 4V49 7 AE 30S ribosomal protein S5 562  
197 4V4A 5 AE 30S ribosomal protein S5 562  
198 4V4G 5 AE, CE, EE, GE, IE 30S ribosomal protein S5 562  
199 4V5N 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
200 4V5M 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
201 4V68 4 AE 30S ribosomal protein S5 274  
202 1ML5 10 H 30S RIBOSOMAL PROTEIN S5 562  
203 1JGO 8 H 30S RIBOSOMAL PROTEIN S5 274  
204 1JGP 8 H 30S RIBOSOMAL PROTEIN S5 274  
205 1JGQ 8 H 30S RIBOSOMAL PROTEIN S5 274  
206 4V42 8 AH 30S RIBOSOMAL PROTEIN S5 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 25
95% 36 205 45
90% 36 205 47
70% 36 205 57
50% 47 290 35
40% 47 290 45
30% 52 342 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 23
95% 36 206 41
90% 36 206 43
70% 36 206 52
50% 41 284 41
40% 48 343 34
30% 48 344 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18113
95% 36 213 32
90% 36 213 35
70% 41 295 24
50% 41 296 34
40% 41 296 44
30% 41 296 67
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 207 20
95% 36 207 39
90% 36 207 41
70% 36 207 50
50% 41 289 39
40% 41 289 49
30% 46 343 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 205 24
95% 36 205 46
90% 36 205 48
70% 36 206 55
50% 36 206 85
40% 36 206 110
30% 36 206 129
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 209 18
95% 38 214 30
90% 38 214 33
70% 38 214 43
50% 46 297 33
40% 46 298 43
30% 46 298 65
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 201 29
95% 36 206 43
90% 36 206 45
70% 36 206 54
50% 36 206 84
40% 36 207 109
30% 41 287 74
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 120 62
95% 36 200 47
90% 36 204 49
70% 36 204 58
50% 36 204 87
40% 36 204 112
30% 36 204 131
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 131 56
95% 33 180 55
90% 33 180 57
70% 33 180 72
50% 33 180 119
40% 33 180 143
30% 33 180 159
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 209 17
95% 37 209 34
90% 37 209 38
70% 37 209 47
50% 42 287 38
40% 42 287 48
30% 42 287 71
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 21
95% 36 207 36
90% 36 207 39
70% 36 207 48
50% 41 283 43
40% 41 284 51
30% 41 284 73
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 156 52
95% 36 205 44
90% 36 205 46
70% 36 205 56
50% 36 205 86
40% 36 205 111
30% 36 205 130
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 196 32
95% 36 196 51
90% 36 196 53
70% 36 196 64
50% 36 196 97
40% 36 196 120
30% 36 196 143
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 179 36
95% 33 179 56
90% 33 179 59
70% 33 179 73
50% 34 220 77
40% 34 220 101
30% 34 220 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 30
95% 36 207 37
90% 36 207 40
70% 36 207 49
50% 41 284 40
40% 41 285 50
30% 41 285 72
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 22
95% 36 206 40
90% 36 206 42
70% 36 206 51
50% 42 288 37
40% 42 288 47
30% 42 290 69
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 211 15
95% 43 217 28
90% 43 217 31
70% 43 217 41
50% 43 217 78
40% 43 217 102
30% 49 256 85
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 210 16
95% 37 211 33
90% 37 211 36
70% 37 211 45
50% 42 254 52
40% 42 255 67
30% 42 255 88
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 206 19
95% 37 206 38
90% 37 210 37
70% 37 210 46
50% 44 290 36
40% 45 292 46
30% 51 347 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 116 81
95% 36 206 42
90% 36 206 44
70% 36 206 53
50% 41 284 42
40% 41 284 52
30% 46 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.