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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 33 Members. Sequence cutoff: 100% Cluster size: 219 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 36 1e, 2e 30S ribosomal protein S5 300852  
2 4W2F 5 AE, CE 30S Ribosomal Protein S5 300852  
3 4Y4P 36 1e, 2e 30S ribosomal protein S5 300852  
4 4W2G 5 AE, CE 30S Ribosomal Protein S5 300852  
5 4LFB 5 E ribosomal protein S5 300852  
6 1VY4 5 AE, CE 30S ribosomal protein S5 300852  
7 4W2I 5 AE, CE 30S Ribosomal Protein S5 300852  
8 1VY5 5 AE, CE 30S ribosomal protein S5 300852  
9 4WQF 38 BE, DE 30S ribosomal protein S5 300852  
10 4W2H 5 AE, CE 30S Ribosomal Protein S5 300852  
11 4WPO 38 BE, DE 30S ribosomal protein S5 300852  
12 4V8I 5 AE, CE 30S Ribosomal Protein S5 274  
13 4JI1 5 E RIBOSOMAL PROTEIN S5 300852  
14 4Z3S 36 1e, 2e 30S ribosomal protein S5 300852  
15 4Z3Q 36 1e, 2e 30S Ribosomal Protein S5 300852  
16 4DR6 5 E 30S ribosomal protein S5 300852  
17 4LF7 5 E ribosomal protein S5 300852  
18 4LF8 5 E ribosomal protein S5 300852  
19 4WSD 5 42, 4E 30S ribosomal protein S5 300852  
20 4WQU 38 BE, DE 30S ribosomal protein S5 300852  
21 2VQE 5 E 30S RIBOSOMAL PROTEIN S5 300852  
22 4Z8C 36 1e, 2e 30S ribosomal protein S5 300852  
23 2UUB 5 E 30S RIBOSOMAL PROTEIN S5 300852  
24 4DV6 5 E ribosomal protein S5 300852  
25 4JYA 5 E 30S ribosomal protein S5 300852  
26 4DR5 5 E 30S ribosomal protein S5 300852  
27 4KHP 5 E 30S Ribosomal protein S5 300852  
28 4DR2 5 E 30S ribosomal protein S5 300852  
29 4WRO 9 4E 30S ribosomal protein S5 300852  
30 4WQ1 5 42, 4E 30S ribosomal protein S5 300852  
31 4LF9 5 E ribosomal protein S5 300852  
32 4WQY 38 BE, DE 30S ribosomal protein S5 300852  
33 4DUY 5 E ribosomal protein S5 300852  
34 4DV7 5 E ribosomal protein S5 300852  
35 4WRA 5 42, 4E 30S ribosomal protein S5 300852  
36 4V9H 18 AE 30S ribosomal protein S5 300852  
37 4V8D 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
38 4DR3 5 E 30S ribosomal protein S5 300852  
39 4V90 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
40 4JI3 5 E RIBOSOMAL PROTEIN S5 300852  
41 4WQR 5 42, 4E 30S ribosomal protein S5 300852  
42 4JI6 5 E RIBOSOMAL PROTEIN S5 300852  
43 4JI8 5 E RIBOSOMAL PROTEIN S5 300852  
44 2UXC 5 E RIBOSOMAL PROTEIN S5 300852  
45 4V9R 5 AE, CE 30S Ribosomal Protein S5 274  
46 4B3M 5 E 30S RIBOSOMAL PROTEIN S5 300852  
47 4LF4 5 E ribosomal protein S5 300852  
48 4LF6 5 E ribosomal protein S5 300852  
49 4JI7 5 E RIBOSOMAL PROTEIN S5 300852  
50 4WU1 5 42, 4E 30S ribosomal protein S5 300852  
51 4B3T 5 E 30S RIBOSOMAL PROTEIN S5 300852  
52 4WR6 5 42, 4E 30S ribosomal protein S5 300852  
53 4V8B 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
54 2VQF 5 E 30S RIBOSOMAL PROTEIN S5 300852  
55 2UUA 5 E 30S RIBOSOMAL PROTEIN S5 300852  
56 4V87 35 BH, CH 30S RIBOSOMAL PROTEIN S5 300852  
57 4V95 5 AE, CE 30S Ribosomal Protein S5 274  
58 1VY7 5 AE, CE 30S ribosomal protein S5 300852  
59 4B3R 5 E 30S RIBOSOMAL PROTEIN S5 300852  
60 4LNT 5 QE, XE 30S ribosomal protein S5 300852  
61 4DR1 5 E 30S ribosomal protein S5 300852  
62 4LFA 5 E ribosomal protein S5 300852  
63 4DV4 5 E ribosomal protein S5 300852  
64 4JI0 5 E ribosomal protein S5 300852  
65 4V9S 5 AE, CE 30S Ribosomal Protein S5 274  
66 4JI2 5 E RIBOSOMAL PROTEIN S5 300852  
67 4JV5 5 E 30S ribosomal protein S5 300852  
68 4DR7 5 E 30S ribosomal protein S5 300852  
69 1J5E 5 E 30S RIBOSOMAL PROTEIN S5 274  
70 4GKK 5 E 30S ribosomal protein S5 300852  
71 4DUZ 5 E ribosomal protein S5 300852  
72 4V8G 5 AE, CE 30S Ribosomal Protein S5 300852  
73 4GKJ 5 E 30S ribosomal protein S5 300852  
74 4DV3 5 E ribosomal protein S5 300852  
75 4DV5 5 E ribosomal protein S5 300852  
76 2UUC 5 E 30S RIBOSOMAL PROTEIN S5 300852  
77 4LFC 5 E ribosomal protein S5 300852  
78 1FJG 6 E 30S RIBOSOMAL PROTEIN S5 274  
79 3T1Y 5 E 30S ribosomal protein S5 300852  
80 4WZO 5 42, 4E 30S ribosomal protein S5 300852  
81 4JI4 5 E RIBOSOMAL PROTEIN S5 300852  
82 1VY6 5 AE, CE 30S ribosomal protein S5 300852  
83 1XMQ 7 E 30S Ribosomal Protein S5 274  
84 4DV0 5 E ribosomal protein S5 300852  
85 4V9B 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
86 4V6F 35 BH, CH 30S ribosomal protein S5 300852  
87 4V8F 35 BH, CH 30S RIBOSOMAL PROTEIN S5 300852  
88 4B3S 5 E 30S RIBOSOMAL PROTEIN S5 300852  
89 4DV2 5 E ribosomal protein S5 300852  
90 4DV1 5 E ribosomal protein S5 300852  
91 1N32 7 E 30S RIBOSOMAL PROTEIN S5 274  
92 1I94 5 E 30S RIBOSOMAL PROTEIN S5 274  
93 4V8H 5 AE, CE 30S Ribosomal Protein S5 300852  
94 4JI5 5 E RIBOSOMAL PROTEIN S5 300852  
95 4K0K 5 E 30S ribosomal protein S5 300852  
96 4W2E 38 e 30S ribosomal protein S5 300852  
97 4V8C 35 CH, DH 30S RIBOSOMAL PROTEIN S5 300852  
98 4LF5 5 E ribosomal protein S5 300852  
99 4V9A 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
100 4V5J 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
101 4V7Y 5 AE, CE 30S ribosomal protein S5 300852  
102 4V8E 35 BH, DH 30S RIBOSOMAL PROTEIN S5 300852  
103 4DR4 5 E 30S ribosomal protein S5 300852  
104 4WZD 5 42, 4E 30S ribosomal protein S5 300852  
105 3OTO 5 E 30S RIBOSOMAL PROTEIN S5 300852  
106 2UU9 5 E 30S RIBOSOMAL PROTEIN S5 300852  
107 4V8Q 39 BE 30S RIBOSOMAL PROTEIN S5 300852  
108 1HR0 6 E 30S RIBOSOMAL PROTEIN S5 274  
109 4AQY 5 E 30S RIBOSOMAL PROTEIN S5 274  
110 4NXM 5 E ribosomal protein S5 300852  
111 4V5L 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
112 4V7X 5 AE, CE 30S ribosomal protein S5 300852  
113 4ZER 36 1e, 2e 30S ribosomal protein S5 300852  
114 1IBL 8 E 30S RIBOSOMAL PROTEIN S5 274  
115 4V7W 5 AE, CE 30S ribosomal protein S5 300852  
116 4WT1 5 42, 4E 30S ribosomal protein S5 300852  
117 4Z3R 36 1e, 2e 30S ribosomal protein S5 300852  
118 4WT8 5 AE, BE 30S ribosomal protein S5 300852  
119 4NXN 5 E ribosomal protein S5 300852  
120 1XNR 7 E 16S Ribosomal protein S5 274  
121 4LT8 5 QE, XE 30S ribosomal protein S5 300852  
122 4V51 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
123 4V7L 5 AE, CE 30S ribosomal protein S5 300852  
124 4V5R 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
125 1HNZ 6 E 30S RIBOSOMAL PROTEIN S5 274  
126 1XNQ 7 E Ribosomal protein S5 274  
127 4V8A 35 CE, DE 30S ribosomal protein S5 300852  
128 4V5K 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
129 4V5Q 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
130 4V7J 4 Ae, Be 30S ribosomal protein S5 300852  
131 4V5C 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
132 4V5E 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
133 4L47 5 QE, XE 30S ribosomal protein S5 300852  
134 4V5P 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
135 4V5D 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
136 4V7Z 5 AE, CE 30S ribosomal protein S5 300852  
137 4V8X 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
138 4V5S 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
139 4V9I 5 AE, CE 30S Ribosomal protein S5 300852  
140 1XMO 7 E 30S ribosomal protein S5 274  
141 3T1H 5 E 30S ribosomal protein S5 300852  
142 2UXD 5 E RIBOSOMAL PROTEIN S5 300852  
143 1N33 7 E 30S RIBOSOMAL PROTEIN S5 274  
144 1IBK 6 E 30S RIBOSOMAL PROTEIN S5 274  
145 4V6G 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
146 4V8N 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
147 4V97 5 AE, CE 30S ribosomal protein S5 300852  
148 1HNW 6 E 30S RIBOSOMAL PROTEIN S5 274  
149 4V7M 5 AE, CE 30S ribosomal protein S5 300852  
150 4WSM 5 42, 4E 30S ribosomal protein S5 300852  
151 4TUD 5 QE, XE 30S ribosomal protein S5 300852  
152 1IBM 8 E 30S RIBOSOMAL PROTEIN S5 274  
153 4V6A 5 AE, CE 30S ribosomal protein S5 300852  
154 4TUE 5 QE, XE 30S ribosomal protein S5 300852  
155 4TUA 5 QE, XE 30S ribosomal protein S5 300852  
156 4V84 5 AE, CE 30S ribosomal protein S5 262724  
157 4V7K 4 Ae, Be 30S ribosomal protein S5 300852  
158 1HNX 6 E 30S RIBOSOMAL PROTEIN S5 274  
159 4V9Q 35 BE, DE 30S ribosomal protein S5 262724  
160 4TUC 5 QE, XE 30S ribosomal protein S5 300852  
161 4YHH 5 E 30S ribosomal protein S5 262724  
162 4TUB 5 QE, XE 30S ribosomal protein S5 300852  
163 4V9N 8 AE, CE 30S ribosomal protein S5 262724  
164 4P70 5 QE, XE 30S ribosomal protein S5 300852  
165 4V8U 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
166 4LSK 5 QE, XE 30S ribosomal protein S5 300852  
167 4P6F 5 QE, XE 30S ribosomal protein S5 300852  
168 4V67 7 AE, CE 30S ribosomal protein S5 274  
169 4V83 5 AE, CE 30S ribosomal protein S5 262724  
170 4V5F 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
171 1VVJ 5 QE, XE 30S ribosomal protein S5 300852  
172 4LFZ 5 QE, XE 30S ribosomal protein S5 300852  
173 2E5L 6 E 30S ribosomal protein S5 274  
174 2HHH 5 E 30S ribosomal protein S5 300852  
175 4OX9 5 E 30S ribosomal protein S5 300852  
176 2UXB 5 E RIBOSOMAL PROTEIN S5 300852  
177 1I96 5 E 30S RIBOSOMAL PROTEIN S5 274  
178 4V9K 4 AE, CE 30S ribosomal protein S5 262724  
179 1N34 6 E 30S RIBOSOMAL PROTEIN S5 274  
180 4V5A 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
181 4V63 7 AE, CE 30S ribosomal protein S5 262724  
182 4L71 5 QE, XE 30S ribosomal protein S5 300852  
183 4KVB 5 E 30S ribosomal protein S5 262724  
184 4XEJ 32 AS05, BS05 30S ribosomal protein S5 262724  
185 4V7P 5 AE, DE 30S ribosomal protein S5 262724  
186 4V8J 5 AE, CE 30S ribosomal protein S5 300852  
187 1N36 5 E 30S RIBOSOMAL PROTEIN S5 274  
188 2ZM6 5 E 30S ribosomal protein S5 274  
189 4LEL 5 QE, XE 30S ribosomal protein S5 300852  
190 2F4V 6 E 30S ribosomal protein S5 274  
191 4V9L 4 AE, CE 30S ribosomal protein S5 262724  
192 1FKA 5 E 30S RIBOSOMAL PROTEIN S5 274  
193 4V5G 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
194 1I97 5 E 30S RIBOSOMAL PROTEIN S5 274  
195 4V9J 4 AE, CE 30S ribosomal protein S5 262724  
196 1I95 5 E 30S RIBOSOMAL PROTEIN S5 274  
197 4V8O 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
198 4V9M 4 AE, CE 30S ribosomal protein S5 262724  
199 4W29 4 AE, CE 30S ribosomal protein S5 262724  
200 4V4Y 7 AH 30S ribosomal protein S5 300852  
201 4V4J 38 f 30S ribosomal protein S5 262724  
202 4V4X 7 AH 30S ribosomal protein S5 300852  
203 4V4Z 8 AH 30S ribosomal protein S5 300852  
204 4V4I 38 f 30S ribosomal protein S5 262724  
205 4V4P 40 BH 30S ribosomal protein S5 300852  
206 4V4R 8 AE 30S ribosomal protein S5 300852  
207 4V4S 8 AE 30S ribosomal protein S5 300852  
208 4V4T 8 AE 30S ribosomal protein S5 300852  
209 4V49 7 AE 30S ribosomal protein S5 562  
210 4V4A 5 AE 30S ribosomal protein S5 562  
211 4V4G 5 AE, CE, EE, GE, IE 30S ribosomal protein S5 562  
212 4V5N 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
213 4V5M 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
214 4V68 4 AE 30S ribosomal protein S5 274  
215 1ML5 10 H 30S RIBOSOMAL PROTEIN S5 562  
216 1JGO 8 H 30S RIBOSOMAL PROTEIN S5 274  
217 1JGP 8 H 30S RIBOSOMAL PROTEIN S5 274  
218 1JGQ 8 H 30S RIBOSOMAL PROTEIN S5 274  
219 4V42 8 AH 30S RIBOSOMAL PROTEIN S5 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 217 36
95% 43 218 51
90% 43 218 55
70% 43 218 66
50% 55 306 31
40% 55 306 42
30% 60 368 40
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 34
95% 43 219 47
90% 43 219 51
70% 43 219 61
50% 49 300 42
40% 56 369 30
30% 56 370 38
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18680
95% 43 226 39
90% 43 226 43
70% 49 311 22
50% 49 312 30
40% 49 312 41
30% 49 312 57
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 32
95% 43 220 45
90% 43 220 49
70% 43 220 59
50% 49 305 39
40% 49 305 50
30% 54 369 44
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 218 35
95% 43 218 52
90% 43 218 56
70% 43 219 64
50% 43 219 92
40% 43 219 114
30% 43 219 128
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 222 29
95% 45 227 36
90% 45 227 40
70% 45 227 52
50% 54 313 29
40% 54 314 39
30% 54 314 54
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 214 37
95% 43 219 49
90% 43 219 53
70% 43 219 63
50% 43 219 91
40% 43 220 113
30% 49 303 70
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 133 59
95% 43 213 56
90% 43 217 58
70% 43 217 69
50% 43 217 94
40% 43 217 116
30% 43 217 130
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 145 55
95% 40 194 64
90% 40 194 67
70% 40 194 79
50% 40 194 113
40% 40 194 131
30% 40 194 150
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 222 28
95% 44 222 41
90% 44 222 46
70% 44 222 56
50% 50 303 38
40% 50 303 48
30% 50 303 67
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 30
95% 43 220 42
90% 43 220 47
70% 43 220 57
50% 49 299 41
40% 49 300 51
30% 49 300 69
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 169 49
95% 43 218 50
90% 43 218 54
70% 43 218 65
50% 43 218 93
40% 43 218 115
30% 43 218 129
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 209 40
95% 43 209 59
90% 43 209 62
70% 43 209 73
50% 43 209 100
40% 43 209 123
30% 43 209 135
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 193 45
95% 40 193 65
90% 40 193 68
70% 40 193 80
50% 42 237 77
40% 42 237 102
30% 42 237 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 212 38
95% 43 220 43
90% 43 220 48
70% 43 220 58
50% 49 300 40
40% 49 301 49
30% 49 301 68
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 33
95% 43 219 46
90% 43 219 50
70% 43 219 60
50% 50 304 37
40% 50 304 47
30% 50 306 63
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 224 25
95% 50 230 24
90% 50 230 29
70% 50 230 41
50% 50 230 83
40% 50 230 108
30% 56 269 80
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 223 27
95% 44 224 40
90% 44 224 44
70% 44 224 54
50% 49 267 51
40% 49 268 64
30% 49 268 83
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 219 31
95% 44 219 44
90% 44 223 45
70% 44 223 55
50% 52 306 35
40% 53 308 43
30% 59 373 37
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 130 75
95% 43 219 48
90% 43 219 52
70% 43 219 62
50% 49 300 43
40% 49 300 52
30% 54 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.