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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 24 Members. Sequence cutoff: 100% Cluster size: 199 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 36 1e, 2e 30S ribosomal protein S5 300852  
2 4W2F 5 AE, CE 30S Ribosomal Protein S5 300852  
3 4Y4P 36 1e, 2e 30S ribosomal protein S5 300852  
4 4W2G 5 AE, CE 30S Ribosomal Protein S5 300852  
5 4LFB 5 E ribosomal protein S5 300852  
6 1VY4 5 AE, CE 30S ribosomal protein S5 300852  
7 4W2I 5 AE, CE 30S Ribosomal Protein S5 300852  
8 1VY5 5 AE, CE 30S ribosomal protein S5 300852  
9 4WQF 38 BE, DE 30S ribosomal protein S5 300852  
10 4W2H 5 AE, CE 30S Ribosomal Protein S5 300852  
11 4WPO 38 BE, DE 30S ribosomal protein S5 300852  
12 4V8I 5 AE, CE 30S Ribosomal Protein S5 274  
13 4JI1 5 E RIBOSOMAL PROTEIN S5 300852  
14 4DR6 5 E 30S ribosomal protein S5 300852  
15 4LF7 5 E ribosomal protein S5 300852  
16 4LF8 5 E ribosomal protein S5 300852  
17 4WQU 38 BE, DE 30S ribosomal protein S5 300852  
18 2VQE 5 E 30S RIBOSOMAL PROTEIN S5 300852  
19 2UUB 5 E 30S RIBOSOMAL PROTEIN S5 300852  
20 4DV6 5 E ribosomal protein S5 300852  
21 4JYA 5 E 30S ribosomal protein S5 300852  
22 4DR5 5 E 30S ribosomal protein S5 300852  
23 4KHP 5 E 30S Ribosomal protein S5 300852  
24 4DR2 5 E 30S ribosomal protein S5 300852  
25 4LF9 5 E ribosomal protein S5 300852  
26 4WQY 38 BE, DE 30S ribosomal protein S5 300852  
27 4DUY 5 E ribosomal protein S5 300852  
28 4DV7 5 E ribosomal protein S5 300852  
29 4V9H 18 AE 30S ribosomal protein S5 300852  
30 4V8D 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
31 4DR3 5 E 30S ribosomal protein S5 300852  
32 4V90 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
33 4JI3 5 E RIBOSOMAL PROTEIN S5 300852  
34 4JI6 5 E RIBOSOMAL PROTEIN S5 300852  
35 4JI8 5 E RIBOSOMAL PROTEIN S5 300852  
36 2UXC 5 E RIBOSOMAL PROTEIN S5 300852  
37 4V9R 5 AE, CE 30S Ribosomal Protein S5 274  
38 4B3M 5 E 30S RIBOSOMAL PROTEIN S5 300852  
39 4LF4 5 E ribosomal protein S5 300852  
40 4LF6 5 E ribosomal protein S5 300852  
41 4JI7 5 E RIBOSOMAL PROTEIN S5 300852  
42 4B3T 5 E 30S RIBOSOMAL PROTEIN S5 300852  
43 4V8B 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
44 2VQF 5 E 30S RIBOSOMAL PROTEIN S5 300852  
45 2UUA 5 E 30S RIBOSOMAL PROTEIN S5 300852  
46 4V87 35 BH, CH 30S RIBOSOMAL PROTEIN S5 300852  
47 4V95 5 AE, CE 30S Ribosomal Protein S5 274  
48 1VY7 5 AE, CE 30S ribosomal protein S5 300852  
49 4B3R 5 E 30S RIBOSOMAL PROTEIN S5 300852  
50 4LNT 5 QE, XE 30S ribosomal protein S5 300852  
51 4DR1 5 E 30S ribosomal protein S5 300852  
52 4LFA 5 E ribosomal protein S5 300852  
53 4DV4 5 E ribosomal protein S5 300852  
54 4JI0 5 E ribosomal protein S5 300852  
55 4V9S 5 AE, CE 30S Ribosomal Protein S5 274  
56 4JI2 5 E RIBOSOMAL PROTEIN S5 300852  
57 4JV5 5 E 30S ribosomal protein S5 300852  
58 4DR7 5 E 30S ribosomal protein S5 300852  
59 1J5E 5 E 30S RIBOSOMAL PROTEIN S5 274  
60 4GKK 5 E 30S ribosomal protein S5 300852  
61 4DUZ 5 E ribosomal protein S5 300852  
62 4V8G 5 AE, CE 30S Ribosomal Protein S5 300852  
63 4GKJ 5 E 30S ribosomal protein S5 300852  
64 4DV3 5 E ribosomal protein S5 300852  
65 4DV5 5 E ribosomal protein S5 300852  
66 2UUC 5 E 30S RIBOSOMAL PROTEIN S5 300852  
67 4LFC 5 E ribosomal protein S5 300852  
68 1FJG 6 E 30S RIBOSOMAL PROTEIN S5 274  
69 3T1Y 5 E 30S ribosomal protein S5 300852  
70 4JI4 5 E RIBOSOMAL PROTEIN S5 300852  
71 1VY6 5 AE, CE 30S ribosomal protein S5 300852  
72 1XMQ 7 E 30S Ribosomal Protein S5 274  
73 4DV0 5 E ribosomal protein S5 300852  
74 4V9B 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
75 4V6F 35 BH, CH 30S ribosomal protein S5 300852  
76 4V8F 35 BH, CH 30S RIBOSOMAL PROTEIN S5 300852  
77 4B3S 5 E 30S RIBOSOMAL PROTEIN S5 300852  
78 4DV2 5 E ribosomal protein S5 300852  
79 4DV1 5 E ribosomal protein S5 300852  
80 1N32 7 E 30S RIBOSOMAL PROTEIN S5 274  
81 1I94 5 E 30S RIBOSOMAL PROTEIN S5 274  
82 4V8H 5 AE, CE 30S Ribosomal Protein S5 300852  
83 4JI5 5 E RIBOSOMAL PROTEIN S5 300852  
84 4K0K 5 E 30S ribosomal protein S5 300852  
85 4W2E 38 e 30S ribosomal protein S5 300852  
86 4V8C 35 CH, DH 30S RIBOSOMAL PROTEIN S5 300852  
87 4LF5 5 E ribosomal protein S5 300852  
88 4V9A 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
89 4V5J 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
90 4V7Y 5 AE, CE 30S ribosomal protein S5 300852  
91 4V8E 35 BH, DH 30S RIBOSOMAL PROTEIN S5 300852  
92 4DR4 5 E 30S ribosomal protein S5 300852  
93 3OTO 5 E 30S RIBOSOMAL PROTEIN S5 300852  
94 2UU9 5 E 30S RIBOSOMAL PROTEIN S5 300852  
95 4V8Q 39 BE 30S RIBOSOMAL PROTEIN S5 300852  
96 1HR0 6 E 30S RIBOSOMAL PROTEIN S5 274  
97 4AQY 5 E 30S RIBOSOMAL PROTEIN S5 274  
98 4NXM 5 E ribosomal protein S5 300852  
99 4V5L 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
100 4V7X 5 AE, CE 30S ribosomal protein S5 300852  
101 1IBL 8 E 30S RIBOSOMAL PROTEIN S5 274  
102 4V7W 5 AE, CE 30S ribosomal protein S5 300852  
103 4WUS 6 E 30S ribosomal protein S5 300852  
104 4WT8 5 E 30S ribosomal protein S5 300852  
105 4NXN 5 E ribosomal protein S5 300852  
106 1XNR 7 E 16S Ribosomal protein S5 274  
107 4LT8 5 QE, XE 30S ribosomal protein S5 300852  
108 4V51 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
109 4V7L 5 AE, CE 30S ribosomal protein S5 300852  
110 4V5R 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
111 1HNZ 6 E 30S RIBOSOMAL PROTEIN S5 274  
112 1XNQ 7 E Ribosomal protein S5 274  
113 4V8A 35 CE, DE 30S ribosomal protein S5 300852  
114 4V5K 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
115 4V5Q 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
116 4V7J 4 Ae, Be 30S ribosomal protein S5 300852  
117 4V5C 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
118 4V5E 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
119 4L47 5 QE, XE 30S ribosomal protein S5 300852  
120 4V5P 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
121 4V5D 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
122 4V7Z 5 AE, CE 30S ribosomal protein S5 300852  
123 4V8X 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
124 4V5S 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
125 4V9I 5 AE, CE 30S Ribosomal protein S5 300852  
126 1XMO 7 E 30S ribosomal protein S5 274  
127 3T1H 5 E 30S ribosomal protein S5 300852  
128 2UXD 5 E RIBOSOMAL PROTEIN S5 300852  
129 1N33 7 E 30S RIBOSOMAL PROTEIN S5 274  
130 1IBK 6 E 30S RIBOSOMAL PROTEIN S5 274  
131 4V6G 5 AH, CH 30S RIBOSOMAL PROTEIN S5 300852  
132 4V8N 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
133 4V97 5 AE, CE 30S ribosomal protein S5 300852  
134 1HNW 6 E 30S RIBOSOMAL PROTEIN S5 274  
135 4V7M 5 AE, CE 30S ribosomal protein S5 300852  
136 1IBM 8 E 30S RIBOSOMAL PROTEIN S5 274  
137 4V6A 5 AE, CE 30S ribosomal protein S5 300852  
138 4V84 5 AE, CE 30S ribosomal protein S5 262724  
139 4V7K 4 Ae, Be 30S ribosomal protein S5 300852  
140 1HNX 6 E 30S RIBOSOMAL PROTEIN S5 274  
141 4V9Q 35 BE, DE 30S ribosomal protein S5 262724  
142 4YHH 5 E 30S ribosomal protein S5 262724  
143 4V9N 8 AE, CE 30S ribosomal protein S5 262724  
144 4P70 5 QE, XE 30S ribosomal protein S5 300852  
145 4V8U 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
146 4LSK 5 QE, XE 30S ribosomal protein S5 300852  
147 4P6F 5 QE, XE 30S ribosomal protein S5 300852  
148 4V67 7 AE, CE 30S ribosomal protein S5 274  
149 4V83 5 AE, CE 30S ribosomal protein S5 262724  
150 4V5F 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
151 1VVJ 5 QE, XE 30S ribosomal protein S5 300852  
152 4LFZ 5 QE, XE 30S ribosomal protein S5 300852  
153 2E5L 6 E 30S ribosomal protein S5 274  
154 2HHH 5 E 30S ribosomal protein S5 300852  
155 4OX9 5 E 30S ribosomal protein S5 300852  
156 2UXB 5 E RIBOSOMAL PROTEIN S5 300852  
157 1I96 5 E 30S RIBOSOMAL PROTEIN S5 274  
158 4V9K 4 AE, CE 30S ribosomal protein S5 262724  
159 1N34 6 E 30S RIBOSOMAL PROTEIN S5 274  
160 4V5A 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
161 4V63 7 AE, CE 30S ribosomal protein S5 262724  
162 4L71 5 QE, XE 30S ribosomal protein S5 300852  
163 4KVB 5 E 30S ribosomal protein S5 262724  
164 4XEJ 32 AS05, BS05 30S ribosomal protein S5 262724  
165 4V7P 5 AE, DE 30S ribosomal protein S5 262724  
166 4V8J 5 AE, CE 30S ribosomal protein S5 300852  
167 1N36 5 E 30S RIBOSOMAL PROTEIN S5 274  
168 2ZM6 5 E 30S ribosomal protein S5 274  
169 4LEL 5 QE, XE 30S ribosomal protein S5 300852  
170 2F4V 6 E 30S ribosomal protein S5 274  
171 4V9L 4 AE, CE 30S ribosomal protein S5 262724  
172 1FKA 5 E 30S RIBOSOMAL PROTEIN S5 274  
173 4V5G 5 AE, CE 30S RIBOSOMAL PROTEIN S5 300852  
174 1I97 5 E 30S RIBOSOMAL PROTEIN S5 274  
175 4V9J 4 AE, CE 30S ribosomal protein S5 262724  
176 1I95 5 E 30S RIBOSOMAL PROTEIN S5 274  
177 4V8O 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
178 4V9M 4 AE, CE 30S ribosomal protein S5 262724  
179 4W29 4 AE, CE 30S ribosomal protein S5 262724  
180 4V4Y 7 AH 30S ribosomal protein S5 300852  
181 4V4J 38 f 30S ribosomal protein S5 262724  
182 4V4X 7 AH 30S ribosomal protein S5 300852  
183 4V4Z 8 AH 30S ribosomal protein S5 300852  
184 4V4I 38 f 30S ribosomal protein S5 262724  
185 4V4P 40 BH 30S ribosomal protein S5 300852  
186 4V4R 8 AE 30S ribosomal protein S5 300852  
187 4V4S 8 AE 30S ribosomal protein S5 300852  
188 4V4T 8 AE 30S ribosomal protein S5 300852  
189 4V49 7 AE 30S ribosomal protein S5 562  
190 4V4A 5 AE 30S ribosomal protein S5 562  
191 4V4G 5 AE, CE, EE, GE, IE 30S ribosomal protein S5 562  
192 4V5N 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
193 4V5M 5 AE 30S RIBOSOMAL PROTEIN S5 300852  
194 4V68 4 AE 30S ribosomal protein S5 274  
195 1ML5 10 H 30S RIBOSOMAL PROTEIN S5 562  
196 1JGO 8 H 30S RIBOSOMAL PROTEIN S5 274  
197 1JGP 8 H 30S RIBOSOMAL PROTEIN S5 274  
198 1JGQ 8 H 30S RIBOSOMAL PROTEIN S5 274  
199 4V42 8 AH 30S RIBOSOMAL PROTEIN S5 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 59
50% 46 282 35
40% 46 282 45
30% 51 333 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 276 42
40% 47 333 35
30% 47 333 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17980
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 288 34
40% 40 288 44
30% 40 288 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 22
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 281 39
40% 40 281 50
30% 45 334 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 26
95% 35 198 46
90% 35 198 48
70% 35 198 60
50% 35 198 92
40% 35 198 114
30% 35 198 138
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 20
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 289 33
40% 45 289 43
30% 45 289 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 199 112
30% 40 279 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 89
50% 32 174 130
40% 32 174 148
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 19
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 279 38
40% 41 279 49
30% 41 279 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 23
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 35 200 88
40% 40 276 53
30% 40 276 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 58
50% 35 198 91
40% 35 198 113
30% 35 198 137
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 112
40% 35 189 135
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 91
50% 33 214 76
40% 33 214 102
30% 33 214 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 276 40
40% 40 277 51
30% 40 277 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 280 37
40% 41 280 48
30% 41 282 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 17
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 82
40% 42 210 107
30% 48 248 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 18
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 246 54
40% 41 247 71
30% 41 247 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 21
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 282 36
40% 44 284 46
30% 50 338 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 276 41
40% 40 276 54
30% 45 329 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.