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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 35 Members. Sequence cutoff: 95% Cluster size: 199 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 35 1d, 2d 30S ribosomal protein S4 300852  
2 4W2F 4 AD, CD 30S Ribosomal Protein S4 300852  
3 4Y4P 35 1d, 2d 30S ribosomal protein S4 300852  
4 4W2G 4 AD, CD 30S Ribosomal Protein S4 300852  
5 4LFB 4 D ribosomal protein S4 300852  
6 1VY4 4 AD, CD 30S ribosomal protein S4 300852  
7 4W2I 4 AD, CD 30S Ribosomal Protein S4 300852  
8 1VY5 4 AD, CD 30S ribosomal protein S4 300852  
9 4WQF 37 BD, DD 30S ribosomal protein S4 300852  
10 4W2H 4 AD, CD 30S Ribosomal Protein S4 300852  
11 4WPO 37 BD, DD 30S ribosomal protein S4 300852  
12 4V8I 4 AD, CD 30S Ribosomal Protein S4 274  
13 4JI1 4 D RIBOSOMAL PROTEIN S4 300852  
14 4DR6 4 D 30S ribosomal protein S4 300852  
15 4LF7 4 D ribosomal protein S4 300852  
16 4LF8 4 D ribosomal protein S4 300852  
17 4WQU 37 BD, DD 30S ribosomal protein S4 300852  
18 2VQE 4 D 30S RIBOSOMAL PROTEIN S4 300852  
19 2UUB 4 D 30S RIBOSOMAL PROTEIN S4 300852  
20 4DV6 4 D ribosomal protein S4 300852  
21 4JYA 4 D 30S ribosomal protein S4 300852  
22 4DR5 4 D 30S ribosomal protein S4 300852  
23 4KHP 4 D 30S Ribosomal protein S4 300852  
24 4DR2 4 D 30S ribosomal protein S4 300852  
25 4LF9 4 D ribosomal protein S4 300852  
26 4WQY 37 BD, DD 30S ribosomal protein S4 300852  
27 4DUY 4 D ribosomal protein S4 300852  
28 4DV7 4 D ribosomal protein S4 300852  
29 4V9H 17 AD 30S ribosomal protein S4 300852  
30 4V8D 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
31 4DR3 4 D 30S ribosomal protein S4 300852  
32 4V90 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
33 4JI3 4 D RIBOSOMAL PROTEIN S4 300852  
34 4JI6 4 D RIBOSOMAL PROTEIN S4 300852  
35 4JI8 4 D RIBOSOMAL PROTEIN S4 300852  
36 2UXC 4 D RIBOSOMAL PROTEIN S4 300852  
37 4V9R 4 AD, CD 30S Ribosomal Protein S4 274  
38 4B3M 4 D 30S RIBOSOMAL PROTEIN S4 300852  
39 4LF4 4 D ribosomal protein S4 300852  
40 4LF6 4 D ribosomal protein S4 300852  
41 4JI7 4 D RIBOSOMAL PROTEIN S4 300852  
42 4B3T 4 D 30S RIBOSOMAL PROTEIN S4 300852  
43 4V8B 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
44 2VQF 4 D 30S RIBOSOMAL PROTEIN S4 300852  
45 2UUA 4 D 30S RIBOSOMAL PROTEIN S4 300852  
46 4V87 34 BG, CG 30S RIBOSOMAL PROTEIN S4 300852  
47 4V95 4 AD, CD 30S Ribosomal Protein S4 274  
48 1VY7 4 AD, CD 30S ribosomal protein S4 300852  
49 4B3R 4 D 30S RIBOSOMAL PROTEIN S4 300852  
50 4LNT 4 QD, XD 30S ribosomal protein S4 300852  
51 4DR1 4 D 30S ribosomal protein S4 300852  
52 4LFA 4 D ribosomal protein S4 300852  
53 4DV4 4 D ribosomal protein S4 300852  
54 4JI0 4 D ribosomal protein S4 300852  
55 4V9S 4 AD, CD 30S Ribosomal Protein S4 274  
56 4JI2 4 D RIBOSOMAL PROTEIN S4 300852  
57 4JV5 4 D 30S ribosomal protein S4 300852  
58 4DR7 4 D 30S ribosomal protein S4 300852  
59 1J5E 4 D 30S RIBOSOMAL PROTEIN S4 274  
60 4GKK 4 D 30S ribosomal protein S4 300852  
61 4DUZ 4 D ribosomal protein S4 300852  
62 4V8G 4 AD, CD 30S Ribosomal Protein S4 300852  
63 4GKJ 4 D 30S ribosomal protein S4 300852  
64 4DV3 4 D ribosomal protein S4 300852  
65 4DV5 4 D ribosomal protein S4 300852  
66 2UUC 4 D 30S RIBOSOMAL PROTEIN S4 300852  
67 4LFC 4 D ribosomal protein S4 300852  
68 1FJG 5 D 30S RIBOSOMAL PROTEIN S4 274  
69 3T1Y 4 D 30S ribosomal protein S4 300852  
70 4JI4 4 D RIBOSOMAL PROTEIN S4 300852  
71 1VY6 4 AD, CD 30S ribosomal protein S4 300852  
72 1XMQ 6 D 30S Ribosomal Protein S4 274  
73 4DV0 4 D ribosomal protein S4 300852  
74 4V9B 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
75 4V6F 34 BG, CG 30S ribosomal protein S4 300852  
76 4V8F 34 BG, CG 30S RIBOSOMAL PROTEIN S4 300852  
77 4B3S 4 D 30S RIBOSOMAL PROTEIN S4 300852  
78 4DV2 4 D ribosomal protein S4 300852  
79 4DV1 4 D ribosomal protein S4 300852  
80 1N32 6 D 30S RIBOSOMAL PROTEIN S4 274  
81 1I94 4 D 30S RIBOSOMAL PROTEIN S4 274  
82 4V8H 4 AD, CD 30S Ribosomal Protein S4 300852  
83 4JI5 4 D RIBOSOMAL PROTEIN S4 300852  
84 4K0K 4 D 30S ribosomal protein S4 300852  
85 4W2E 37 d 30S ribosomal protein S4 300852  
86 4V8C 34 CG, DG 30S RIBOSOMAL PROTEIN S4 300852  
87 4LF5 4 D ribosomal protein S4 300852  
88 4V9A 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
89 4V5J 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
90 4V7Y 4 AD, CD 30S ribosomal protein S4 300852  
91 4V8E 34 BG, DG 30S RIBOSOMAL PROTEIN S4 300852  
92 4DR4 4 D 30S ribosomal protein S4 300852  
93 3OTO 4 D 30S RIBOSOMAL PROTEIN S4 300852  
94 2UU9 4 D 30S RIBOSOMAL PROTEIN S4 300852  
95 4V8Q 38 BD 30S RIBOSOMAL PROTEIN S4 300852  
96 1HR0 5 D 30S RIBOSOMAL PROTEIN S4 274  
97 4AQY 4 D 30S RIBOSOMAL PROTEIN S4 274  
98 4NXM 4 D ribosomal protein S4 300852  
99 4V5L 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
100 4V7X 4 AD, CD 30S ribosomal protein S4 300852  
101 1IBL 7 D 30S RIBOSOMAL PROTEIN S4 274  
102 4V7W 4 AD, CD 30S ribosomal protein S4 300852  
103 4WUS 5 D 30S ribosomal protein S4 300852  
104 4WT8 4 D 30S ribosomal protein S4 300852  
105 4NXN 4 D ribosomal protein S4 300852  
106 1XNR 6 D 16S Ribosomal protein S4 274  
107 4LT8 4 QD, XD 30S ribosomal protein S4 300852  
108 4V51 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
109 4V7L 4 AD, CD 30S ribosomal protein S4 300852  
110 4V5R 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
111 1HNZ 5 D 30S RIBOSOMAL PROTEIN S4 274  
112 1XNQ 6 D Ribosomal protein S4 274  
113 4V8A 34 CD, DD 30S ribosomal protein S4 300852  
114 4V5K 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
115 4V5Q 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
116 4V7J 3 Ad, Bd 30S ribosomal protein S4 300852  
117 4V5C 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
118 4V5E 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
119 4L47 4 QD, XD 30S ribosomal protein S4 300852  
120 4V5P 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
121 4V5D 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
122 4V7Z 4 AD, CD 30S ribosomal protein S4 300852  
123 4V8X 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
124 4V5S 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
125 4V9I 4 AD, CD 30S Ribosomal protein S4 300852  
126 1XMO 6 D 30S ribosomal protein S4 274  
127 3T1H 4 D 30S ribosomal protein S4 300852  
128 2UXD 4 D RIBOSOMAL PROTEIN S4 300852  
129 1N33 6 D 30S RIBOSOMAL PROTEIN S4 274  
130 1IBK 5 D 30S RIBOSOMAL PROTEIN S4 274  
131 4V6G 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
132 4V8N 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
133 4V97 4 AD, CD 30S ribosomal protein S4 300852  
134 1HNW 5 D 30S RIBOSOMAL PROTEIN S4 274  
135 4V7M 4 AD, CD 30S ribosomal protein S4 300852  
136 1IBM 7 D 30S RIBOSOMAL PROTEIN S4 274  
137 4V6A 4 AD, CD 30S ribosomal protein S4 300852  
138 4V84 4 AD, CD 30S ribosomal protein S4 262724  
139 4V7K 3 Ad, Bd 30S ribosomal protein S4 300852  
140 1HNX 5 D 30S RIBOSOMAL PROTEIN S4 274  
141 4V9Q 34 BD, DD 30S ribosomal protein S4 262724  
142 4V9N 7 AD, CD 30S ribosomal protein S4 262724  
143 4P70 4 QD, XD 30S ribosomal protein S4 300852  
144 4V8U 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
145 4LSK 4 QD, XD 30S ribosomal protein S4 300852  
146 4P6F 4 QD, XD 30S ribosomal protein S4 300852  
147 4V67 6 AD, CD 30S ribosomal protein S4 274  
148 4V83 4 AD, CD 30S ribosomal protein S4 262724  
149 4V5F 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
150 1VVJ 4 QD, XD 30S ribosomal protein S4 300852  
151 4LFZ 4 QD, XD 30S ribosomal protein S4 300852  
152 2E5L 5 D 30S ribosomal protein S4 274  
153 2HHH 4 D 30S ribosomal protein S4 300852  
154 4OX9 4 D 30S ribosomal protein S4 300852  
155 2UXB 4 D RIBOSOMAL PROTEIN S4 300852  
156 1I96 4 D 30S RIBOSOMAL PROTEIN S4 274  
157 4V9K 3 AD, CD 30S ribosomal protein S4 262724  
158 1N34 5 D 30S RIBOSOMAL PROTEIN S4 274  
159 4V5A 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
160 4V63 6 AD, CD 30S ribosomal protein S4 262724  
161 4L71 4 QD, XD 30S ribosomal protein S4 300852  
162 4KVB 4 D 30S ribosomal protein S4 262724  
163 4XEJ 31 AS04, BS04 30S ribosomal protein S4 262724  
164 4V7P 4 AD, DD 30S ribosomal protein S4 262724  
165 4V8J 4 AD, CD 30S ribosomal protein S4 300852  
166 1N36 4 D 30S RIBOSOMAL PROTEIN S4 274  
167 2ZM6 4 D 30S ribosomal protein S4 274  
168 4LEL 4 QD, XD 30S ribosomal protein S4 300852  
169 2F4V 5 D 30S ribosomal protein S4 274  
170 4V9L 3 AD, CD 30S ribosomal protein S4 262724  
171 1FKA 4 D 30S RIBOSOMAL PROTEIN S4 274  
172 4V5G 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
173 1I97 4 D 30S RIBOSOMAL PROTEIN S4 274  
174 4V9J 3 AD, CD 30S ribosomal protein S4 262724  
175 1I95 4 D 30S RIBOSOMAL PROTEIN S4 274  
176 4V8O 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
177 4V9M 3 AD, CD 30S ribosomal protein S4 262724  
178 4W29 3 AD, CD 30S ribosomal protein S4 262724  
179 4V4Y 6 AG 30S ribosomal protein S4 300852  
180 4V4J 37 e 30S ribosomal protein S4 262724  
181 4V4X 6 AG 30S ribosomal protein S4 300852  
182 4V4Z 7 AG 30S ribosomal protein S4 300852  
183 4V4I 37 e 30S ribosomal protein S4 262724  
184 4V4P 39 BG 30S ribosomal protein S4 300852  
185 4V4R 7 AD 30S ribosomal protein S4 300852  
186 4V4S 7 AD 30S ribosomal protein S4 300852  
187 4V4T 7 AD 30S ribosomal protein S4 300852  
188 4V49 6 AD 30S ribosomal protein S4 562  
189 4V4A 4 AD 30S ribosomal protein S4 562  
190 4V4G 4 AD, CD, ED, GD, ID 30S ribosomal protein S4 562  
191 4V5N 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
192 4V5M 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
193 4V68 3 AD 30S ribosomal protein S4 274  
194 4V5Z 12 Ad 40S Ribosomal protein S9e 9615  
195 1ML5 9 G 30S RIBOSOMAL PROTEIN S4 562  
196 1JGO 7 G 30S RIBOSOMAL PROTEIN S4 274  
197 1JGP 7 G 30S RIBOSOMAL PROTEIN S4 274  
198 1JGQ 7 G 30S RIBOSOMAL PROTEIN S4 274  
199 4V42 7 AG 30S RIBOSOMAL PROTEIN S4 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 196 28
95% 35 197 44
90% 35 197 46
70% 35 197 58
50% 46 280 35
40% 46 280 45
30% 51 331 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 24
95% 35 198 40
90% 35 198 42
70% 35 198 54
50% 40 274 42
40% 47 330 35
30% 47 330 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17888
95% 35 205 31
90% 35 205 33
70% 40 286 24
50% 40 286 34
40% 40 286 44
30% 40 286 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 21
95% 35 199 37
90% 35 199 39
70% 35 199 51
50% 40 279 39
40% 40 279 51
30% 45 331 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 25
95% 35 197 45
90% 35 197 47
70% 35 197 59
50% 35 197 92
40% 35 197 114
30% 35 197 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 201 19
95% 37 206 30
90% 37 206 32
70% 37 206 43
50% 45 287 33
40% 45 287 43
30% 45 287 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 193 29
95% 35 198 42
90% 35 198 44
70% 35 198 56
50% 35 198 90
40% 35 198 112
30% 40 277 75
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 112 66
95% 35 192 49
90% 35 196 48
70% 35 196 60
50% 35 196 93
40% 35 196 116
30% 35 196 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 58
95% 32 174 71
90% 32 174 75
70% 32 174 88
50% 32 174 128
40% 32 174 146
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 176 45
95% 33 176 67
90% 33 176 70
70% 33 176 83
50% 41 277 38
40% 41 277 48
30% 41 277 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 22
95% 35 199 34
90% 35 199 37
70% 35 199 48
50% 35 199 88
40% 40 274 53
30% 40 274 74
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 148 54
95% 35 197 43
90% 35 197 45
70% 35 197 57
50% 35 197 91
40% 35 197 113
30% 35 197 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 188 31
95% 35 188 51
90% 35 188 54
70% 35 188 66
50% 35 188 111
40% 35 188 133
30% 35 188 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 90
50% 33 213 75
40% 33 213 102
30% 33 213 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 191 30
95% 35 199 35
90% 35 199 38
70% 35 199 49
50% 40 274 40
40% 40 275 52
30% 40 275 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 23
95% 35 198 39
90% 35 198 41
70% 35 198 53
50% 41 278 37
40% 41 278 47
30% 41 280 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 17
95% 42 209 29
90% 42 209 31
70% 42 209 42
50% 42 209 80
40% 42 209 106
30% 48 247 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 18
95% 36 203 32
90% 36 203 34
70% 36 203 45
50% 41 245 53
40% 41 246 70
30% 41 246 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 198 20
95% 36 198 36
90% 36 202 35
70% 36 202 46
50% 43 280 36
40% 44 282 46
30% 50 335 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 108 87
95% 35 198 41
90% 35 198 43
70% 35 198 55
50% 40 274 41
40% 40 274 54
30% 45 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.