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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 39 Members. Sequence cutoff: 95% Cluster size: 190 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 4 AD, CD 30S Ribosomal Protein S4 300852  
2 4W2G 4 AD, CD 30S Ribosomal Protein S4 300852  
3 4LFB 4 D ribosomal protein S4 300852  
4 1VY4 4 AD, CD 30S ribosomal protein S4 300852  
5 4W2I 4 AD, CD 30S Ribosomal Protein S4 300852  
6 1VY5 4 AD, CD 30S ribosomal protein S4 300852  
7 4W2H 4 AD, CD 30S Ribosomal Protein S4 300852  
8 4V8I 4 AD, CD 30S Ribosomal Protein S4 274  
9 4JI1 4 D RIBOSOMAL PROTEIN S4 300852  
10 4DR6 4 D 30S ribosomal protein S4 300852  
11 4LF7 4 D ribosomal protein S4 300852  
12 4LF8 4 D ribosomal protein S4 300852  
13 2VQE 4 D 30S RIBOSOMAL PROTEIN S4 300852  
14 2UUB 4 D 30S RIBOSOMAL PROTEIN S4 300852  
15 4DV6 4 D ribosomal protein S4 300852  
16 4JYA 4 D 30S ribosomal protein S4 300852  
17 4DR5 4 D 30S ribosomal protein S4 300852  
18 4KHP 4 D 30S Ribosomal protein S4 300852  
19 4DR2 4 D 30S ribosomal protein S4 300852  
20 4LF9 4 D ribosomal protein S4 300852  
21 4DUY 4 D ribosomal protein S4 300852  
22 4DV7 4 D ribosomal protein S4 300852  
23 4V9H 17 AD 30S ribosomal protein S4 300852  
24 4V8D 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
25 4DR3 4 D 30S ribosomal protein S4 300852  
26 4V90 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
27 4JI3 4 D RIBOSOMAL PROTEIN S4 300852  
28 4JI6 4 D RIBOSOMAL PROTEIN S4 300852  
29 4JI8 4 D RIBOSOMAL PROTEIN S4 300852  
30 2UXC 4 D RIBOSOMAL PROTEIN S4 300852  
31 4V9R 4 AD, CD 30S Ribosomal Protein S4 274  
32 4B3M 4 D 30S RIBOSOMAL PROTEIN S4 300852  
33 4LF4 4 D ribosomal protein S4 300852  
34 4LF6 4 D ribosomal protein S4 300852  
35 4JI7 4 D RIBOSOMAL PROTEIN S4 300852  
36 4B3T 4 D 30S RIBOSOMAL PROTEIN S4 300852  
37 4V8B 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
38 2VQF 4 D 30S RIBOSOMAL PROTEIN S4 300852  
39 2UUA 4 D 30S RIBOSOMAL PROTEIN S4 300852  
40 4V87 34 BG, CG 30S RIBOSOMAL PROTEIN S4 300852  
41 4V95 4 AD, CD 30S Ribosomal Protein S4 274  
42 1VY7 4 AD, CD 30S ribosomal protein S4 300852  
43 4B3R 4 D 30S RIBOSOMAL PROTEIN S4 300852  
44 4LNT 4 QD, XD 30S ribosomal protein S4 300852  
45 4DR1 4 D 30S ribosomal protein S4 300852  
46 4LFA 4 D ribosomal protein S4 300852  
47 4DV4 4 D ribosomal protein S4 300852  
48 4JI0 4 D ribosomal protein S4 300852  
49 4V9S 4 AD, CD 30S Ribosomal Protein S4 274  
50 4JI2 4 D RIBOSOMAL PROTEIN S4 300852  
51 4JV5 4 D 30S ribosomal protein S4 300852  
52 4DR7 4 D 30S ribosomal protein S4 300852  
53 1J5E 4 D 30S RIBOSOMAL PROTEIN S4 274  
54 4GKK 4 D 30S ribosomal protein S4 300852  
55 4DUZ 4 D ribosomal protein S4 300852  
56 4V8G 4 AD, CD 30S Ribosomal Protein S4 300852  
57 4GKJ 4 D 30S ribosomal protein S4 300852  
58 4DV3 4 D ribosomal protein S4 300852  
59 4DV5 4 D ribosomal protein S4 300852  
60 2UUC 4 D 30S RIBOSOMAL PROTEIN S4 300852  
61 4LFC 4 D ribosomal protein S4 300852  
62 1FJG 5 D 30S RIBOSOMAL PROTEIN S4 274  
63 3T1Y 4 D 30S ribosomal protein S4 300852  
64 4JI4 4 D RIBOSOMAL PROTEIN S4 300852  
65 1VY6 4 AD, CD 30S ribosomal protein S4 300852  
66 1XMQ 6 D 30S Ribosomal Protein S4 274  
67 4DV0 4 D ribosomal protein S4 300852  
68 4V9B 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
69 4V6F 34 BG, CG 30S ribosomal protein S4 300852  
70 4V8F 34 BG, CG 30S RIBOSOMAL PROTEIN S4 300852  
71 4B3S 4 D 30S RIBOSOMAL PROTEIN S4 300852  
72 4DV2 4 D ribosomal protein S4 300852  
73 4DV1 4 D ribosomal protein S4 300852  
74 1N32 6 D 30S RIBOSOMAL PROTEIN S4 274  
75 1I94 4 D 30S RIBOSOMAL PROTEIN S4 274  
76 4V8H 4 AD, CD 30S Ribosomal Protein S4 300852  
77 4JI5 4 D RIBOSOMAL PROTEIN S4 300852  
78 4K0K 4 D 30S ribosomal protein S4 300852  
79 4W2E 37 d 30S ribosomal protein S4 300852  
80 4V8C 34 CG, DG 30S RIBOSOMAL PROTEIN S4 300852  
81 4LF5 4 D ribosomal protein S4 300852  
82 4V9A 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
83 4V5J 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
84 4V7Y 4 AD, CD 30S ribosomal protein S4 300852  
85 4V8E 34 BG, DG 30S RIBOSOMAL PROTEIN S4 300852  
86 4DR4 4 D 30S ribosomal protein S4 300852  
87 3OTO 4 D 30S RIBOSOMAL PROTEIN S4 300852  
88 2UU9 4 D 30S RIBOSOMAL PROTEIN S4 300852  
89 4V8Q 38 BD 30S RIBOSOMAL PROTEIN S4 300852  
90 1HR0 5 D 30S RIBOSOMAL PROTEIN S4 274  
91 4AQY 4 D 30S RIBOSOMAL PROTEIN S4 274  
92 4NXM 4 D ribosomal protein S4 300852  
93 4V5L 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
94 4V7X 4 AD, CD 30S ribosomal protein S4 300852  
95 1IBL 7 D 30S RIBOSOMAL PROTEIN S4 274  
96 4V7W 4 AD, CD 30S ribosomal protein S4 300852  
97 4NXN 4 D ribosomal protein S4 300852  
98 1XNR 6 D 16S Ribosomal protein S4 274  
99 4LT8 4 QD, XD 30S ribosomal protein S4 300852  
100 4V51 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
101 4V7L 4 AD, CD 30S ribosomal protein S4 300852  
102 4V5R 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
103 1HNZ 5 D 30S RIBOSOMAL PROTEIN S4 274  
104 1XNQ 6 D Ribosomal protein S4 274  
105 4V8A 34 CD, DD 30S ribosomal protein S4 300852  
106 4V5K 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
107 4V5Q 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
108 4V7J 3 Ad, Bd 30S ribosomal protein S4 300852  
109 4V5C 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
110 4V5E 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
111 4L47 4 QD, XD 30S ribosomal protein S4 300852  
112 4V5P 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
113 4V5D 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
114 4V7Z 4 AD, CD 30S ribosomal protein S4 300852  
115 4V8X 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
116 4V5S 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
117 4V9I 4 AD, CD 30S Ribosomal protein S4 300852  
118 1XMO 6 D 30S ribosomal protein S4 274  
119 3T1H 4 D 30S ribosomal protein S4 300852  
120 2UXD 4 D RIBOSOMAL PROTEIN S4 300852  
121 1N33 6 D 30S RIBOSOMAL PROTEIN S4 274  
122 1IBK 5 D 30S RIBOSOMAL PROTEIN S4 274  
123 4V6G 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
124 4V8N 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
125 4V97 4 AD, CD 30S ribosomal protein S4 300852  
126 1HNW 5 D 30S RIBOSOMAL PROTEIN S4 274  
127 4V7M 4 AD, CD 30S ribosomal protein S4 300852  
128 1IBM 7 D 30S RIBOSOMAL PROTEIN S4 274  
129 4V6A 4 AD, CD 30S ribosomal protein S4 300852  
130 4V84 4 AD, CD 30S ribosomal protein S4 262724  
131 4V7K 3 Ad, Bd 30S ribosomal protein S4 300852  
132 1HNX 5 D 30S RIBOSOMAL PROTEIN S4 274  
133 4V9Q 34 BD, DD 30S ribosomal protein S4 262724  
134 4V9N 7 AD, CD 30S ribosomal protein S4 262724  
135 4P70 4 QD, XD 30S ribosomal protein S4 300852  
136 4V8U 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
137 4LSK 4 QD, XD 30S ribosomal protein S4 300852  
138 4P6F 4 QD, XD 30S ribosomal protein S4 300852  
139 4V67 6 AD, CD 30S ribosomal protein S4 274  
140 4V83 4 AD, CD 30S ribosomal protein S4 262724  
141 4V5F 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
142 1VVJ 4 QD, XD 30S ribosomal protein S4 300852  
143 4LFZ 4 QD, XD 30S ribosomal protein S4 300852  
144 2E5L 5 D 30S ribosomal protein S4 274  
145 2HHH 4 D 30S ribosomal protein S4 300852  
146 4OX9 4 D 30S ribosomal protein S4 300852  
147 2UXB 4 D RIBOSOMAL PROTEIN S4 300852  
148 1I96 4 D 30S RIBOSOMAL PROTEIN S4 274  
149 4V9K 3 AD, CD 30S ribosomal protein S4 262724  
150 1N34 5 D 30S RIBOSOMAL PROTEIN S4 274  
151 4V5A 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
152 4V63 6 AD, CD 30S ribosomal protein S4 262724  
153 4L71 4 QD, XD 30S ribosomal protein S4 300852  
154 4KVB 4 D 30S ribosomal protein S4 262724  
155 4V7P 4 AD, DD 30S ribosomal protein S4 262724  
156 4V8J 4 AD, CD 30S ribosomal protein S4 300852  
157 1N36 4 D 30S RIBOSOMAL PROTEIN S4 274  
158 2ZM6 4 D 30S ribosomal protein S4 274  
159 4LEL 4 QD, XD 30S ribosomal protein S4 300852  
160 2F4V 5 D 30S ribosomal protein S4 274  
161 4V9L 3 AD, CD 30S ribosomal protein S4 262724  
162 1FKA 4 D 30S RIBOSOMAL PROTEIN S4 274  
163 4V5G 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
164 1I97 4 D 30S RIBOSOMAL PROTEIN S4 274  
165 4V9J 3 AD, CD 30S ribosomal protein S4 262724  
166 1I95 4 D 30S RIBOSOMAL PROTEIN S4 274  
167 4V8O 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
168 4V9M 3 AD, CD 30S ribosomal protein S4 262724  
169 4W29 3 AD, CD 30S ribosomal protein S4 262724  
170 4V4Y 6 AG 30S ribosomal protein S4 300852  
171 4V4J 37 e 30S ribosomal protein S4 262724  
172 4V4X 6 AG 30S ribosomal protein S4 300852  
173 4V4Z 7 AG 30S ribosomal protein S4 300852  
174 4V4I 37 e 30S ribosomal protein S4 262724  
175 4V4P 39 BG 30S ribosomal protein S4 300852  
176 4V4R 7 AD 30S ribosomal protein S4 300852  
177 4V4S 7 AD 30S ribosomal protein S4 300852  
178 4V4T 7 AD 30S ribosomal protein S4 300852  
179 4V49 6 AD 30S ribosomal protein S4 562  
180 4V4A 4 AD 30S ribosomal protein S4 562  
181 4V4G 4 AD, CD, ED, GD, ID 30S ribosomal protein S4 562  
182 4V5N 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
183 4V5M 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
184 4V68 3 AD 30S ribosomal protein S4 274  
185 4V5Z 12 Ad 40S Ribosomal protein S9e 9615  
186 1ML5 9 G 30S RIBOSOMAL PROTEIN S4 562  
187 1JGO 7 G 30S RIBOSOMAL PROTEIN S4 274  
188 1JGP 7 G 30S RIBOSOMAL PROTEIN S4 274  
189 1JGQ 7 G 30S RIBOSOMAL PROTEIN S4 274  
190 4V42 7 AG 30S RIBOSOMAL PROTEIN S4 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 187 27
95% 29 188 47
90% 29 188 50
70% 29 188 60
50% 39 269 34
40% 39 269 46
30% 39 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 25
95% 29 189 43
90% 29 189 46
70% 29 189 56
50% 33 263 41
40% 40 316 35
30% 40 316 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17436
95% 29 196 35
90% 29 196 37
70% 33 275 24
50% 33 275 33
40% 33 275 45
30% 33 275 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 22
95% 29 190 41
90% 29 190 44
70% 29 190 54
50% 33 268 38
40% 33 268 51
30% 38 317 50
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 188 26
95% 29 188 48
90% 29 188 51
70% 29 188 61
50% 29 188 94
40% 29 188 119
30% 29 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 20
95% 31 197 33
90% 31 197 35
70% 31 197 47
50% 38 276 32
40% 38 276 43
30% 38 276 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 28
95% 29 189 45
90% 29 189 48
70% 29 189 58
50% 29 189 92
40% 29 189 117
30% 33 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 104 54
95% 29 183 49
90% 29 187 52
70% 29 187 62
50% 29 187 95
40% 29 187 120
30% 29 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 48
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 139
30% 26 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 266 37
40% 34 266 49
30% 34 266 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 23
95% 29 190 38
90% 29 190 42
70% 29 190 52
50% 29 190 91
40% 33 263 53
30% 33 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 140 42
95% 29 188 46
90% 29 188 49
70% 29 188 59
50% 29 188 93
40% 29 188 118
30% 29 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 179 34
95% 29 179 53
90% 29 179 55
70% 29 179 68
50% 29 179 105
40% 29 179 132
30% 29 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 166 38
95% 26 166 63
90% 26 166 66
70% 26 166 82
50% 27 206 75
40% 27 206 100
30% 27 206 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 182 29
95% 29 190 39
90% 29 190 43
70% 29 190 53
50% 33 263 39
40% 33 264 52
30% 33 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 24
95% 29 189 42
90% 29 189 45
70% 29 189 55
50% 34 267 36
40% 34 267 48
30% 34 269 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 194 18
95% 36 200 29
90% 36 200 30
70% 36 200 44
50% 36 200 86
40% 36 200 108
30% 41 236 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 193 19
95% 30 194 36
90% 30 194 38
70% 30 194 49
50% 34 234 56
40% 34 235 74
30% 34 235 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 21
95% 30 189 40
90% 30 193 39
70% 30 193 51
50% 36 269 35
40% 37 271 47
30% 43 321 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 76
95% 29 189 44
90% 29 189 47
70% 29 189 57
50% 33 263 40
40% 33 263 54
30% 38 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.